RNA–Protein interactions for RNA: ENST00000486641.2

CCDC171-208, Transcript of coiled-coil domain containing 171, humanhuman

TSL 1 (best)

Gene CCDC171, Length 2,322 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC171-208ENST00000486641 NISCHQ9Y2I1 1504 aa20.07■□□□□ 0.8
CCDC171-208ENST00000486641 HRCP23327 699 aa18.09■□□□□ 0.49
CCDC171-208ENST00000486641 SHROOM4Q9ULL8 1493 aa17.79■□□□□ 0.44
CCDC171-208ENST00000486641 SUPT5HO00267 1087 aaKnown RBP17.75■□□□□ 0.43
CCDC171-208ENST00000486641 PPARGC1BQ86YN6 1023 aaKnown RBP17.72■□□□□ 0.43
CCDC171-208ENST00000486641 PCGF6Q9BYE7 350 aa17.69■□□□□ 0.42
CCDC171-208ENST00000486641 MYO15BQ96JP2 1530 aa17.64■□□□□ 0.41
CCDC171-208ENST00000486641 CHIC1Q5VXU3 224 aa17.51■□□□□ 0.39
CCDC171-208ENST00000486641 PELP1Q8IZL8 1130 aaKnown RBP17.46■□□□□ 0.38
CCDC171-208ENST00000486641 DCAF1Q9Y4B6 1507 aa17.26■□□□□ 0.35
CCDC171-208ENST00000486641 SCAF1Q9H7N4 1312 aaKnown RBP17.13■□□□□ 0.33
CCDC171-208ENST00000486641 TRIM26Q12899 539 aaPredicted RBP17.13■□□□□ 0.33
CCDC171-208ENST00000486641 LOC105371045A0A1W2PR82 267 aa17.12■□□□□ 0.33
CCDC171-208ENST00000486641 ZCCHC6Q5VYS8 1495 aaKnown RBP17.08■□□□□ 0.32
CCDC171-208ENST00000486641 CCDC180Q9P1Z9 1646 aa17.05■□□□□ 0.32
CCDC171-208ENST00000486641 ZEB1P37275 1124 aaPredicted RBP16.98■□□□□ 0.31
CCDC171-208ENST00000486641 MYT1Q01538 1121 aa16.78■□□□□ 0.28
CCDC171-208ENST00000486641 ACIN1Q9UKV3 1341 aaKnown RBP16.7■□□□□ 0.26
CCDC171-208ENST00000486641 DCAF8L2P0C7V8 631 aa16.69■□□□□ 0.26
CCDC171-208ENST00000486641 NEUROD1Q13562 356 aa16.65■□□□□ 0.26
CCDC171-208ENST00000486641 GTF3C3Q9Y5Q9 886 aa16.56■□□□□ 0.24
CCDC171-208ENST00000486641 CENPBP07199 599 aaPredicted RBP16.45■□□□□ 0.22
CCDC171-208ENST00000486641 TRIM41Q8WV44 630 aa16.41■□□□□ 0.22
CCDC171-208ENST00000486641 FAM9AQ8IZU1 332 aaPredicted RBP16.41■□□□□ 0.22
CCDC171-208ENST00000486641 DIEXFQ68CQ4 756 aaKnown RBP16.4■□□□□ 0.22
CCDC171-208ENST00000486641 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.39■□□□□ 0.21
CCDC171-208ENST00000486641 CCER1Q8TC90 406 aaPredicted RBP16.34■□□□□ 0.21
CCDC171-208ENST00000486641 EHMT2Q96KQ7 1210 aa16.33■□□□□ 0.2
CCDC171-208ENST00000486641 ABCC9O60706 1549 aa16.24■□□□□ 0.19
CCDC171-208ENST00000486641 RSF1Q96T23 1441 aaPredicted RBP16.19■□□□□ 0.18
CCDC171-208ENST00000486641 RB1CC1Q8TDY2 1594 aa16.12■□□□□ 0.17
CCDC171-208ENST00000486641 YTHDC1Q96MU7 727 aaKnown RBP16.11■□□□□ 0.17
CCDC171-208ENST00000486641 ZNF316A6NFI3 1004 aaPredicted RBP16.08■□□□□ 0.16
CCDC171-208ENST00000486641 MIER1Q8N108 512 aa15.99■□□□□ 0.15
CCDC171-208ENST00000486641 TTBK1Q5TCY1 1321 aaPredicted RBP15.95■□□□□ 0.14
CCDC171-208ENST00000486641 SCRIBQ14160 1630 aa15.89■□□□□ 0.13
CCDC171-208ENST00000486641 WRNQ14191 1432 aaPredicted RBP eCLIP15.86■□□□□ 0.13
CCDC171-208ENST00000486641 SUPT16HQ9Y5B9 1047 aaKnown RBP15.76■□□□□ 0.11
CCDC171-208ENST00000486641 CEP162Q5TB80 1403 aa15.75■□□□□ 0.11
CCDC171-208ENST00000486641 ANP32EQ9BTT0 268 aa15.75■□□□□ 0.11
CCDC171-208ENST00000486641 BCL11AQ9H165 835 aa15.72■□□□□ 0.11
CCDC171-208ENST00000486641 CECR2Q9BXF3 1484 aa15.71■□□□□ 0.11
CCDC171-208ENST00000486641 TSHZ2Q9NRE2 1034 aa15.71■□□□□ 0.1
CCDC171-208ENST00000486641 MROH2BQ7Z745 1585 aa15.7■□□□□ 0.1
CCDC171-208ENST00000486641 CLSPNQ9HAW4 1339 aa15.69■□□□□ 0.1
CCDC171-208ENST00000486641 WIZO95785 1651 aa15.67■□□□□ 0.1
CCDC171-208ENST00000486641 TNIKQ9UKE5 1360 aa15.66■□□□□ 0.1
CCDC171-208ENST00000486641 EIF4G1Q04637 1599 aaKnown RBP15.65■□□□□ 0.1
CCDC171-208ENST00000486641 HNRNPUL2Q1KMD3 747 aaKnown RBP15.65■□□□□ 0.1
CCDC171-208ENST00000486641 CCDC88BA6NC98 1476 aa15.61■□□□□ 0.09
CCDC171-208ENST00000486641 CSRNP3Q8WYN3 585 aa15.58■□□□□ 0.08
CCDC171-208ENST00000486641 ABCC8Q09428 1581 aa15.58■□□□□ 0.08
CCDC171-208ENST00000486641 SOGA1O94964 1423 aa15.57■□□□□ 0.08
CCDC171-208ENST00000486641 UBTFP17480 764 aaKnown RBP15.56■□□□□ 0.08
CCDC171-208ENST00000486641 BAZ1AQ9NRL2 1556 aaPredicted RBP15.52■□□□□ 0.08
CCDC171-208ENST00000486641 RUSC2Q8N2Y8 1516 aa15.49■□□□□ 0.07
CCDC171-208ENST00000486641 EEA1Q15075 1411 aa15.44■□□□□ 0.06
CCDC171-208ENST00000486641 GOLGA3Q08378 1498 aa15.43■□□□□ 0.06
CCDC171-208ENST00000486641 BCANQ96GW7 911 aa15.39■□□□□ 0.05
CCDC171-208ENST00000486641 NACADO15069 1562 aa15.39■□□□□ 0.05
CCDC171-208ENST00000486641 KCNH8Q96L42 1107 aa15.36■□□□□ 0.05
CCDC171-208ENST00000486641 DHX57Q6P158 1386 aaKnown RBP15.36■□□□□ 0.05
CCDC171-208ENST00000486641 FKBP8Q14318 412 aa15.33■□□□□ 0.05
CCDC171-208ENST00000486641 RBM19Q9Y4C8 960 aaKnown RBP15.33■□□□□ 0.05
CCDC171-208ENST00000486641 TOP2AP11388 1531 aaKnown RBP15.33■□□□□ 0.04
CCDC171-208ENST00000486641 CLIP1P30622 1438 aa15.32■□□□□ 0.04
CCDC171-208ENST00000486641 APLP2Q06481 763 aa15.32■□□□□ 0.04
CCDC171-208ENST00000486641 VPS8Q8N3P4 1428 aa15.31■□□□□ 0.04
CCDC171-208ENST00000486641 SMARCA2P51531 1590 aa15.31■□□□□ 0.04
CCDC171-208ENST00000486641 CEP164Q9UPV0 1460 aa15.26■□□□□ 0.03
CCDC171-208ENST00000486641 KIF21BO75037 1637 aa15.23■□□□□ 0.03
CCDC171-208ENST00000486641 MSH5O43196 834 aa15.22■□□□□ 0.03
CCDC171-208ENST00000486641 RANGAP1P46060 587 aaPredicted RBP15.18■□□□□ 0.02
CCDC171-208ENST00000486641 ITGAEP38570 1179 aa15.18■□□□□ 0.02
CCDC171-208ENST00000486641 NEFLP07196 543 aa15.16■□□□□ 0.02
CCDC171-208ENST00000486641 SMARCA4P51532 1647 aa15.15■□□□□ 0.02
CCDC171-208ENST00000486641 BAZ1BQ9UIG0 1483 aaKnown RBP15.14■□□□□ 0.01
CCDC171-208ENST00000486641 RAPGEF2Q9Y4G8 1499 aa15.13■□□□□ 0.01
CCDC171-208ENST00000486641 DDX10Q13206 875 aaKnown RBP15.11■□□□□ 0.01
CCDC171-208ENST00000486641 KANK4Q5T7N3 995 aaPredicted RBP15.1■□□□□ 0.01
CCDC171-208ENST00000486641 SYNJ1O43426 1573 aa15.08■□□□□ 0.01
CCDC171-208ENST00000486641 TRIM52Q96A61 297 aa15.07■□□□□ 0
CCDC171-208ENST00000486641 FANCIQ9NVI1 1328 aa15.06■□□□□ 0
CCDC171-208ENST00000486641 CUX2O14529 1486 aa15.06■□□□□ 0
CCDC171-208ENST00000486641 RRBP1Q9P2E9 1410 aaKnown RBP15.05■□□□□ 0
CCDC171-208ENST00000486641 PRKCSHP14314 528 aaPredicted RBP15.04■□□□□ -0
CCDC171-208ENST00000486641 PPP1R15AO75807 674 aaPredicted RBP15.03■□□□□ -0
CCDC171-208ENST00000486641 ERICH6Q7L0X2 663 aa15.01□□□□□ -0.01
CCDC171-208ENST00000486641 CCER2I3L3R5 266 aa15□□□□□ -0.01
CCDC171-208ENST00000486641 MAPKBP1O60336 1514 aa15□□□□□ -0.01
CCDC171-208ENST00000486641 ARAP1Q96P48 1450 aa14.99□□□□□ -0.01
CCDC171-208ENST00000486641 WDR97A6NE52 1622 aa14.98□□□□□ -0.01
CCDC171-208ENST00000486641 CCNB3Q8WWL7 1395 aa14.97□□□□□ -0.01
CCDC171-208ENST00000486641 CDK11AQ9UQ88 783 aaPredicted RBP14.97□□□□□ -0.01
CCDC171-208ENST00000486641 RAB3GAP2Q9H2M9 1393 aa14.96□□□□□ -0.01
CCDC171-208ENST00000486641 ANP32CO43423 234 aa14.95□□□□□ -0.02
CCDC171-208ENST00000486641 HIRIP3Q9BW71 556 aaPredicted RBP14.94□□□□□ -0.02
CCDC171-208ENST00000486641 SIN3AQ96ST3 1273 aa14.94□□□□□ -0.02
CCDC171-208ENST00000486641 DEKP35659 375 aaKnown RBP14.93□□□□□ -0.02
CCDC171-208ENST00000486641 MYT1LQ9UL68 1186 aa14.92□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 192.2 ms