RNA–Protein interactions for RNA: ENST00000483122.1

VTI1A-205, Transcript of vesicle transport through interaction with t-SNAREs 1A, humanhuman

TSL 4

Gene VTI1A, Length 2,423 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1A-205ENST00000483122 NISCHQ9Y2I1 1504 aa23.17■■□□□ 1.3
VTI1A-205ENST00000483122 CCDC180Q9P1Z9 1646 aa20.52■□□□□ 0.88
VTI1A-205ENST00000483122 HRCP23327 699 aa20.08■□□□□ 0.8
VTI1A-205ENST00000483122 SHROOM4Q9ULL8 1493 aa19.72■□□□□ 0.75
VTI1A-205ENST00000483122 PPARGC1BQ86YN6 1023 aaKnown RBP19.71■□□□□ 0.75
VTI1A-205ENST00000483122 SUPT5HO00267 1087 aaKnown RBP19.66■□□□□ 0.74
VTI1A-205ENST00000483122 ABCC9O60706 1549 aa19.65■□□□□ 0.74
VTI1A-205ENST00000483122 PCGF6Q9BYE7 350 aa19.63■□□□□ 0.73
VTI1A-205ENST00000483122 MYO15BQ96JP2 1530 aa19.6■□□□□ 0.73
VTI1A-205ENST00000483122 PELP1Q8IZL8 1130 aaKnown RBP19.4■□□□□ 0.7
VTI1A-205ENST00000483122 CHIC1Q5VXU3 224 aa19.4■□□□□ 0.7
VTI1A-205ENST00000483122 ZCCHC6Q5VYS8 1495 aaKnown RBP19.39■□□□□ 0.69
VTI1A-205ENST00000483122 DCAF1Q9Y4B6 1507 aa19.23■□□□□ 0.67
VTI1A-205ENST00000483122 NACADO15069 1562 aa19.17■□□□□ 0.66
VTI1A-205ENST00000483122 DCAF8L2P0C7V8 631 aa19.15■□□□□ 0.66
VTI1A-205ENST00000483122 RB1CC1Q8TDY2 1594 aa19.11■□□□□ 0.65
VTI1A-205ENST00000483122 SCAF1Q9H7N4 1312 aaKnown RBP19.06■□□□□ 0.64
VTI1A-205ENST00000483122 LOC105371045A0A1W2PR82 267 aa18.97■□□□□ 0.63
VTI1A-205ENST00000483122 TRIM26Q12899 539 aaPredicted RBP18.96■□□□□ 0.63
VTI1A-205ENST00000483122 ZEB1P37275 1124 aaPredicted RBP18.8■□□□□ 0.6
VTI1A-205ENST00000483122 UNC13AQ9UPW8 1703 aa18.71■□□□□ 0.59
VTI1A-205ENST00000483122 SCRIBQ14160 1630 aa18.69■□□□□ 0.58
VTI1A-205ENST00000483122 MYT1Q01538 1121 aa18.63■□□□□ 0.57
VTI1A-205ENST00000483122 ACIN1Q9UKV3 1341 aaKnown RBP18.55■□□□□ 0.56
VTI1A-205ENST00000483122 NEUROD1Q13562 356 aa18.51■□□□□ 0.55
VTI1A-205ENST00000483122 BICRAQ9NZM4 1560 aa18.5■□□□□ 0.55
VTI1A-205ENST00000483122 GTF3C3Q9Y5Q9 886 aa18.4■□□□□ 0.54
VTI1A-205ENST00000483122 PABPN1Q86U42 306 aaKnown RBP eCLIP18.38■□□□□ 0.53
VTI1A-205ENST00000483122 CENPBP07199 599 aaPredicted RBP18.24■□□□□ 0.51
VTI1A-205ENST00000483122 FAM9AQ8IZU1 332 aaPredicted RBP18.19■□□□□ 0.5
VTI1A-205ENST00000483122 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.18■□□□□ 0.5
VTI1A-205ENST00000483122 DIEXFQ68CQ4 756 aaKnown RBP18.18■□□□□ 0.5
VTI1A-205ENST00000483122 TRIM41Q8WV44 630 aa18.14■□□□□ 0.5
VTI1A-205ENST00000483122 EHMT2Q96KQ7 1210 aa18.13■□□□□ 0.49
VTI1A-205ENST00000483122 CCER1Q8TC90 406 aaPredicted RBP18.11■□□□□ 0.49
VTI1A-205ENST00000483122 EIF4G1Q04637 1599 aaKnown RBP17.99■□□□□ 0.47
VTI1A-205ENST00000483122 CECR2Q9BXF3 1484 aa17.98■□□□□ 0.47
VTI1A-205ENST00000483122 BAZ1AQ9NRL2 1556 aaPredicted RBP17.96■□□□□ 0.47
VTI1A-205ENST00000483122 SMARCA4P51532 1647 aa17.93■□□□□ 0.46
VTI1A-205ENST00000483122 YTHDC1Q96MU7 727 aaKnown RBP17.91■□□□□ 0.46
VTI1A-205ENST00000483122 RSF1Q96T23 1441 aaPredicted RBP17.89■□□□□ 0.45
VTI1A-205ENST00000483122 MROH2BQ7Z745 1585 aa17.85■□□□□ 0.45
VTI1A-205ENST00000483122 CC2D2AQ9P2K1 1620 aa17.83■□□□□ 0.44
VTI1A-205ENST00000483122 ZNF316A6NFI3 1004 aaPredicted RBP17.82■□□□□ 0.44
VTI1A-205ENST00000483122 PEG3Q9GZU2 1588 aa17.76■□□□□ 0.43
VTI1A-205ENST00000483122 SMARCA2P51531 1590 aa17.74■□□□□ 0.43
VTI1A-205ENST00000483122 MIER1Q8N108 512 aa17.73■□□□□ 0.43
VTI1A-205ENST00000483122 TTBK1Q5TCY1 1321 aaPredicted RBP17.73■□□□□ 0.43
VTI1A-205ENST00000483122 ATAD2BQ9ULI0 1458 aa17.72■□□□□ 0.43
VTI1A-205ENST00000483122 WIZO95785 1651 aa17.7■□□□□ 0.42
VTI1A-205ENST00000483122 DNAJC5BQ9UF47 199 aa17.67■□□□□ 0.42
VTI1A-205ENST00000483122 NCAPD3P42695 1498 aa17.66■□□□□ 0.42
VTI1A-205ENST00000483122 HMGXB3Q12766 1538 aa17.64■□□□□ 0.41
VTI1A-205ENST00000483122 BAZ1BQ9UIG0 1483 aaKnown RBP17.6■□□□□ 0.41
VTI1A-205ENST00000483122 WRNQ14191 1432 aaPredicted RBP eCLIP17.56■□□□□ 0.4
VTI1A-205ENST00000483122 TOP2AP11388 1531 aaKnown RBP17.54■□□□□ 0.4
VTI1A-205ENST00000483122 BCL11AQ9H165 835 aa17.53■□□□□ 0.4
VTI1A-205ENST00000483122 ANP32EQ9BTT0 268 aa17.51■□□□□ 0.39
VTI1A-205ENST00000483122 SUPT16HQ9Y5B9 1047 aaKnown RBP17.5■□□□□ 0.39
VTI1A-205ENST00000483122 TSHZ2Q9NRE2 1034 aa17.46■□□□□ 0.39
VTI1A-205ENST00000483122 CEP162Q5TB80 1403 aa17.45■□□□□ 0.38
VTI1A-205ENST00000483122 CLSPNQ9HAW4 1339 aa17.39■□□□□ 0.37
VTI1A-205ENST00000483122 HNRNPUL2Q1KMD3 747 aaKnown RBP17.35■□□□□ 0.37
VTI1A-205ENST00000483122 CSRNP3Q8WYN3 585 aa17.35■□□□□ 0.37
VTI1A-205ENST00000483122 TNIKQ9UKE5 1360 aa17.32■□□□□ 0.36
VTI1A-205ENST00000483122 CCDC88BA6NC98 1476 aa17.3■□□□□ 0.36
VTI1A-205ENST00000483122 ABCC8Q09428 1581 aa17.27■□□□□ 0.35
VTI1A-205ENST00000483122 SOGA1O94964 1423 aa17.24■□□□□ 0.35
VTI1A-205ENST00000483122 UBTFP17480 764 aaKnown RBP17.21■□□□□ 0.35
VTI1A-205ENST00000483122 LAMC3Q9Y6N6 1575 aa17.17■□□□□ 0.34
VTI1A-205ENST00000483122 RUSC2Q8N2Y8 1516 aa17.15■□□□□ 0.34
VTI1A-205ENST00000483122 CADPSQ9ULU8 1353 aa17.15■□□□□ 0.34
VTI1A-205ENST00000483122 CFTRP13569 1480 aa17.13■□□□□ 0.33
VTI1A-205ENST00000483122 BCANQ96GW7 911 aa17.13■□□□□ 0.33
VTI1A-205ENST00000483122 PRDM2Q13029 1718 aa17.12■□□□□ 0.33
VTI1A-205ENST00000483122 NESP48681 1621 aa17.1■□□□□ 0.33
VTI1A-205ENST00000483122 GOLGA3Q08378 1498 aa17.08■□□□□ 0.32
VTI1A-205ENST00000483122 EEA1Q15075 1411 aa17.06■□□□□ 0.32
VTI1A-205ENST00000483122 KCNH8Q96L42 1107 aa17.06■□□□□ 0.32
VTI1A-205ENST00000483122 RBM19Q9Y4C8 960 aaKnown RBP17.02■□□□□ 0.32
VTI1A-205ENST00000483122 DHX57Q6P158 1386 aaKnown RBP17.02■□□□□ 0.32
VTI1A-205ENST00000483122 PDS5BQ9NTI5 1447 aa17.02■□□□□ 0.31
VTI1A-205ENST00000483122 FKBP8Q14318 412 aa17.01■□□□□ 0.31
VTI1A-205ENST00000483122 KIF21AQ7Z4S6 1674 aa16.97■□□□□ 0.31
VTI1A-205ENST00000483122 FANCD2Q9BXW9 1451 aa16.97■□□□□ 0.31
VTI1A-205ENST00000483122 CLIP1P30622 1438 aa16.96■□□□□ 0.31
VTI1A-205ENST00000483122 VPS8Q8N3P4 1428 aa16.95■□□□□ 0.3
VTI1A-205ENST00000483122 ERCC6Q03468 1493 aa16.93■□□□□ 0.3
VTI1A-205ENST00000483122 CEP164Q9UPV0 1460 aa16.92■□□□□ 0.3
VTI1A-205ENST00000483122 APLP2Q06481 763 aa16.92■□□□□ 0.3
VTI1A-205ENST00000483122 MSH5O43196 834 aa16.92■□□□□ 0.3
VTI1A-205ENST00000483122 ITGAEP38570 1179 aa16.88■□□□□ 0.29
VTI1A-205ENST00000483122 KIF21BO75037 1637 aa16.86■□□□□ 0.29
VTI1A-205ENST00000483122 MRC2Q9UBG0 1479 aa16.83■□□□□ 0.28
VTI1A-205ENST00000483122 THOC2Q8NI27 1593 aaKnown RBP16.83■□□□□ 0.28
VTI1A-205ENST00000483122 RANGAP1P46060 587 aaPredicted RBP16.82■□□□□ 0.28
VTI1A-205ENST00000483122 NEFLP07196 543 aa16.82■□□□□ 0.28
VTI1A-205ENST00000483122 PRKCSHP14314 528 aaPredicted RBP16.82■□□□□ 0.28
VTI1A-205ENST00000483122 WDR62O43379 1518 aa16.77■□□□□ 0.28
VTI1A-205ENST00000483122 DNMBPQ6XZF7 1577 aa16.77■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms