RNA–Protein interactions for RNA: ENST00000481242.5

GARNL3-216, Transcript of GTPase activating Rap/RanGAP domain like 3, humanhuman

TSL 2

Gene GARNL3, Length 4,816 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GARNL3-216ENST00000481242 DCAF8L2P0C7V8 631 aa16.63■□□□□ 0.25
GARNL3-216ENST00000481242 NISCHQ9Y2I1 1504 aa16.26■□□□□ 0.19
GARNL3-216ENST00000481242 SUPT5HO00267 1087 aaKnown RBP15.55■□□□□ 0.08
GARNL3-216ENST00000481242 MYT1Q01538 1121 aa15.36■□□□□ 0.05
GARNL3-216ENST00000481242 PELP1Q8IZL8 1130 aaKnown RBP15.28■□□□□ 0.04
GARNL3-216ENST00000481242 SHROOM4Q9ULL8 1493 aa15.28■□□□□ 0.04
GARNL3-216ENST00000481242 FAM9AQ8IZU1 332 aaPredicted RBP15.12■□□□□ 0.01
GARNL3-216ENST00000481242 APLP2Q06481 763 aa15.01□□□□□ -0.01
GARNL3-216ENST00000481242 EHMT2Q96KQ7 1210 aa14.76□□□□□ -0.05
GARNL3-216ENST00000481242 TRIM41Q8WV44 630 aa14.59□□□□□ -0.07
GARNL3-216ENST00000481242 UBTFP17480 764 aaKnown RBP14.4□□□□□ -0.1
GARNL3-216ENST00000481242 ATP1B4Q9UN42 357 aaPredicted RBP14.37□□□□□ -0.11
GARNL3-216ENST00000481242 RANGAP1P46060 587 aaPredicted RBP14.32□□□□□ -0.12
GARNL3-216ENST00000481242 TTBK1Q5TCY1 1321 aaPredicted RBP14.32□□□□□ -0.12
GARNL3-216ENST00000481242 ZEB1P37275 1124 aaPredicted RBP14.3□□□□□ -0.12
GARNL3-216ENST00000481242 PCGF6Q9BYE7 350 aa14.25□□□□□ -0.13
GARNL3-216ENST00000481242 CCER1Q8TC90 406 aaPredicted RBP14.16□□□□□ -0.14
GARNL3-216ENST00000481242 ABCC9O60706 1549 aa14.06□□□□□ -0.16
GARNL3-216ENST00000481242 CENPBP07199 599 aaPredicted RBP14.03□□□□□ -0.16
GARNL3-216ENST00000481242 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.02□□□□□ -0.17
GARNL3-216ENST00000481242 HNRNPUL2Q1KMD3 747 aaKnown RBP14.02□□□□□ -0.17
GARNL3-216ENST00000481242 MYT1LQ9UL68 1186 aa13.97□□□□□ -0.17
GARNL3-216ENST00000481242 PABPN1Q86U42 306 aaKnown RBP eCLIP13.89□□□□□ -0.19
GARNL3-216ENST00000481242 TRIM26Q12899 539 aaPredicted RBP13.88□□□□□ -0.19
GARNL3-216ENST00000481242 CHIC1Q5VXU3 224 aa13.84□□□□□ -0.19
GARNL3-216ENST00000481242 NEFLP07196 543 aa13.83□□□□□ -0.2
GARNL3-216ENST00000481242 ERICH6Q7L0X2 663 aa13.77□□□□□ -0.2
GARNL3-216ENST00000481242 HRCP23327 699 aa13.76□□□□□ -0.21
GARNL3-216ENST00000481242 ITGAEP38570 1179 aa13.74□□□□□ -0.21
GARNL3-216ENST00000481242 PPARGC1BQ86YN6 1023 aaKnown RBP13.7□□□□□ -0.22
GARNL3-216ENST00000481242 LOC105371045A0A1W2PR82 267 aa13.62□□□□□ -0.23
GARNL3-216ENST00000481242 POLR3GLQ9BT43 218 aa13.57□□□□□ -0.24
GARNL3-216ENST00000481242 FBLN2P98095 1184 aa13.57□□□□□ -0.24
GARNL3-216ENST00000481242 FAM50AQ14320 339 aaKnown RBP13.54□□□□□ -0.24
GARNL3-216ENST00000481242 TRIM52Q96A61 297 aa13.49□□□□□ -0.25
GARNL3-216ENST00000481242 CDK11AQ9UQ88 783 aaPredicted RBP13.49□□□□□ -0.25
GARNL3-216ENST00000481242 YTHDC1Q96MU7 727 aaKnown RBP13.48□□□□□ -0.25
GARNL3-216ENST00000481242 SCRIBQ14160 1630 aa13.45□□□□□ -0.26
GARNL3-216ENST00000481242 CCDC180Q9P1Z9 1646 aa13.45□□□□□ -0.26
GARNL3-216ENST00000481242 CSRNP3Q8WYN3 585 aa13.45□□□□□ -0.26
GARNL3-216ENST00000481242 SLC4A1APQ9BWU0 796 aaKnown RBP13.45□□□□□ -0.26
GARNL3-216ENST00000481242 ZCCHC6Q5VYS8 1495 aaKnown RBP13.42□□□□□ -0.26
GARNL3-216ENST00000481242 DAXXQ9UER7 740 aaPredicted RBP13.39□□□□□ -0.27
GARNL3-216ENST00000481242 NPM1P06748 294 aaKnown RBP eCLIP13.36□□□□□ -0.27
GARNL3-216ENST00000481242 RB1CC1Q8TDY2 1594 aa13.32□□□□□ -0.28
GARNL3-216ENST00000481242 ESF1Q9H501 851 aaKnown RBP13.29□□□□□ -0.28
GARNL3-216ENST00000481242 CNGB1Q14028 1251 aaPredicted RBP13.26□□□□□ -0.29
GARNL3-216ENST00000481242 DIEXFQ68CQ4 756 aaKnown RBP13.26□□□□□ -0.29
GARNL3-216ENST00000481242 NEUROD1Q13562 356 aa13.25□□□□□ -0.29
GARNL3-216ENST00000481242 P3H3Q8IVL6 736 aa13.24□□□□□ -0.29
GARNL3-216ENST00000481242 NEFMP07197 916 aa13.21□□□□□ -0.29
GARNL3-216ENST00000481242 ZNF326Q5BKZ1 582 aaKnown RBP13.21□□□□□ -0.29
GARNL3-216ENST00000481242 NACADO15069 1562 aa13.2□□□□□ -0.3
GARNL3-216ENST00000481242 BCANQ96GW7 911 aa13.2□□□□□ -0.3
GARNL3-216ENST00000481242 ZNF777Q9ULD5 760 aaPredicted RBP13.2□□□□□ -0.3
GARNL3-216ENST00000481242 ANP32CO43423 234 aa13.18□□□□□ -0.3
GARNL3-216ENST00000481242 CLSPNQ9HAW4 1339 aa13.16□□□□□ -0.3
GARNL3-216ENST00000481242 ARID3CA6NKF2 412 aa13.14□□□□□ -0.31
GARNL3-216ENST00000481242 AEBP2Q6ZN18 517 aaPredicted RBP13.14□□□□□ -0.31
GARNL3-216ENST00000481242 CHMP7Q8WUX9 453 aaPredicted RBP13.14□□□□□ -0.31
GARNL3-216ENST00000481242 ZBTB47Q9UFB7 747 aaPredicted RBP13.13□□□□□ -0.31
GARNL3-216ENST00000481242 DCAF1Q9Y4B6 1507 aa13.13□□□□□ -0.31
GARNL3-216ENST00000481242 STAG3Q9UJ98 1225 aa13.11□□□□□ -0.31
GARNL3-216ENST00000481242 ACIN1Q9UKV3 1341 aaKnown RBP13.1□□□□□ -0.31
GARNL3-216ENST00000481242 TSPY4P0CV99 314 aa13.08□□□□□ -0.32
GARNL3-216ENST00000481242 TSPY10P0CW01 314 aa13.08□□□□□ -0.32
GARNL3-216ENST00000481242 EEA1Q15075 1411 aa13.07□□□□□ -0.32
GARNL3-216ENST00000481242 ZNF316A6NFI3 1004 aaPredicted RBP13.05□□□□□ -0.32
GARNL3-216ENST00000481242 MTUS2Q5JR59 1369 aa13.01□□□□□ -0.33
GARNL3-216ENST00000481242 TONSLQ96HA7 1378 aa13.01□□□□□ -0.33
GARNL3-216ENST00000481242 BAZ1BQ9UIG0 1483 aaKnown RBP13.01□□□□□ -0.33
GARNL3-216ENST00000481242 CHGAP10645 457 aaKnown RBP13□□□□□ -0.33
GARNL3-216ENST00000481242 RSF1Q96T23 1441 aaPredicted RBP12.97□□□□□ -0.33
GARNL3-216ENST00000481242 CANXP27824 592 aaKnown RBP12.97□□□□□ -0.33
GARNL3-216ENST00000481242 PLEKHD1A6NEE1 506 aa12.96□□□□□ -0.33
GARNL3-216ENST00000481242 SLC24A1O60721 1099 aa12.96□□□□□ -0.34
GARNL3-216ENST00000481242 RTL5Q5HYW3 569 aaPredicted RBP12.93□□□□□ -0.34
GARNL3-216ENST00000481242 KIF27Q86VH2 1401 aa12.92□□□□□ -0.34
GARNL3-216ENST00000481242 GTF3C3Q9Y5Q9 886 aa12.92□□□□□ -0.34
GARNL3-216ENST00000481242 CLIP1P30622 1438 aa12.92□□□□□ -0.34
GARNL3-216ENST00000481242 WRNQ14191 1432 aaPredicted RBP eCLIP12.91□□□□□ -0.34
GARNL3-216ENST00000481242 BAZ1AQ9NRL2 1556 aaPredicted RBP12.9□□□□□ -0.34
GARNL3-216ENST00000481242 ERCC6Q03468 1493 aa12.88□□□□□ -0.35
GARNL3-216ENST00000481242 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.88□□□□□ -0.35
GARNL3-216ENST00000481242 GLIPR1L2Q4G1C9 344 aa12.88□□□□□ -0.35
GARNL3-216ENST00000481242 GOLGA3Q08378 1498 aa12.87□□□□□ -0.35
GARNL3-216ENST00000481242 CHIC2Q9UKJ5 165 aa12.86□□□□□ -0.35
GARNL3-216ENST00000481242 KCNH8Q96L42 1107 aa12.81□□□□□ -0.36
GARNL3-216ENST00000481242 PLPPR3Q6T4P5 718 aa12.8□□□□□ -0.36
GARNL3-216ENST00000481242 CEP164Q9UPV0 1460 aa12.79□□□□□ -0.36
GARNL3-216ENST00000481242 CFDP1Q9UEE9 299 aaPredicted RBP12.78□□□□□ -0.36
GARNL3-216ENST00000481242 PPP1R15AO75807 674 aaPredicted RBP12.78□□□□□ -0.36
GARNL3-216ENST00000481242 BCL11AQ9H165 835 aa12.76□□□□□ -0.37
GARNL3-216ENST00000481242 TNIKQ9UKE5 1360 aa12.74□□□□□ -0.37
GARNL3-216ENST00000481242 CDCA8Q53HL2 280 aa12.74□□□□□ -0.37
GARNL3-216ENST00000481242 TMC1Q8TDI8 760 aa12.74□□□□□ -0.37
GARNL3-216ENST00000481242 SCAF1Q9H7N4 1312 aaKnown RBP12.74□□□□□ -0.37
GARNL3-216ENST00000481242 GOLGA6L2Q8N9W4 650 aaPredicted RBP12.73□□□□□ -0.37
GARNL3-216ENST00000481242 PDS5BQ9NTI5 1447 aa12.73□□□□□ -0.37
GARNL3-216ENST00000481242 WDR43Q15061 677 aaKnown RBP eCLIP12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 54.4 ms