RNA–Protein interactions for RNA: ENST00000480468.1

SIK3-210, Transcript of SIK family kinase 3, humanhuman

TSL 1 (best)

Gene SIK3, Length 2,237 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SIK3-210ENST00000480468 NISCHQ9Y2I1 1504 aa20.04■□□□□ 0.8
SIK3-210ENST00000480468 HRCP23327 699 aa18.09■□□□□ 0.49
SIK3-210ENST00000480468 PELP1Q8IZL8 1130 aaKnown RBP17.77■□□□□ 0.44
SIK3-210ENST00000480468 MYO15BQ96JP2 1530 aa17.5■□□□□ 0.39
SIK3-210ENST00000480468 PCGF6Q9BYE7 350 aa17.49■□□□□ 0.39
SIK3-210ENST00000480468 PPARGC1BQ86YN6 1023 aaKnown RBP17.46■□□□□ 0.39
SIK3-210ENST00000480468 SUPT5HO00267 1087 aaKnown RBP17.44■□□□□ 0.38
SIK3-210ENST00000480468 SHROOM4Q9ULL8 1493 aa17.44■□□□□ 0.38
SIK3-210ENST00000480468 DCAF1Q9Y4B6 1507 aa17.39■□□□□ 0.37
SIK3-210ENST00000480468 CHIC1Q5VXU3 224 aa17.39■□□□□ 0.37
SIK3-210ENST00000480468 CCDC180Q9P1Z9 1646 aa17.19■□□□□ 0.34
SIK3-210ENST00000480468 MYT1Q01538 1121 aa17.19■□□□□ 0.34
SIK3-210ENST00000480468 ZCCHC6Q5VYS8 1495 aaKnown RBP17.11■□□□□ 0.33
SIK3-210ENST00000480468 ZEB1P37275 1124 aaPredicted RBP17.11■□□□□ 0.33
SIK3-210ENST00000480468 TRIM26Q12899 539 aaPredicted RBP17.09■□□□□ 0.33
SIK3-210ENST00000480468 SCAF1Q9H7N4 1312 aaKnown RBP17.07■□□□□ 0.32
SIK3-210ENST00000480468 LOC105371045A0A1W2PR82 267 aa16.82■□□□□ 0.28
SIK3-210ENST00000480468 ACIN1Q9UKV3 1341 aaKnown RBP16.7■□□□□ 0.26
SIK3-210ENST00000480468 NEUROD1Q13562 356 aa16.55■□□□□ 0.24
SIK3-210ENST00000480468 CENPBP07199 599 aaPredicted RBP16.51■□□□□ 0.23
SIK3-210ENST00000480468 GTF3C3Q9Y5Q9 886 aa16.47■□□□□ 0.23
SIK3-210ENST00000480468 DIEXFQ68CQ4 756 aaKnown RBP16.32■□□□□ 0.2
SIK3-210ENST00000480468 ABCC9O60706 1549 aa16.29■□□□□ 0.2
SIK3-210ENST00000480468 TRIM41Q8WV44 630 aa16.25■□□□□ 0.19
SIK3-210ENST00000480468 DCAF8L2P0C7V8 631 aa16.22■□□□□ 0.19
SIK3-210ENST00000480468 CCER1Q8TC90 406 aaPredicted RBP16.21■□□□□ 0.18
SIK3-210ENST00000480468 TTBK1Q5TCY1 1321 aaPredicted RBP16.19■□□□□ 0.18
SIK3-210ENST00000480468 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.17■□□□□ 0.18
SIK3-210ENST00000480468 RSF1Q96T23 1441 aaPredicted RBP16.11■□□□□ 0.17
SIK3-210ENST00000480468 RB1CC1Q8TDY2 1594 aa16.09■□□□□ 0.17
SIK3-210ENST00000480468 FAM9AQ8IZU1 332 aaPredicted RBP16.05■□□□□ 0.16
SIK3-210ENST00000480468 ZNF316A6NFI3 1004 aaPredicted RBP16.04■□□□□ 0.16
SIK3-210ENST00000480468 WRNQ14191 1432 aaPredicted RBP eCLIP15.98■□□□□ 0.15
SIK3-210ENST00000480468 CLSPNQ9HAW4 1339 aa15.97■□□□□ 0.15
SIK3-210ENST00000480468 YTHDC1Q96MU7 727 aaKnown RBP15.87■□□□□ 0.13
SIK3-210ENST00000480468 MIER1Q8N108 512 aa15.85■□□□□ 0.13
SIK3-210ENST00000480468 EHMT2Q96KQ7 1210 aa15.82■□□□□ 0.12
SIK3-210ENST00000480468 ANP32EQ9BTT0 268 aa15.82■□□□□ 0.12
SIK3-210ENST00000480468 BCL11AQ9H165 835 aa15.78■□□□□ 0.12
SIK3-210ENST00000480468 SUPT16HQ9Y5B9 1047 aaKnown RBP15.72■□□□□ 0.11
SIK3-210ENST00000480468 SCRIBQ14160 1630 aa15.72■□□□□ 0.11
SIK3-210ENST00000480468 CEP162Q5TB80 1403 aa15.71■□□□□ 0.11
SIK3-210ENST00000480468 EIF4G1Q04637 1599 aaKnown RBP15.71■□□□□ 0.11
SIK3-210ENST00000480468 TSHZ2Q9NRE2 1034 aa15.68■□□□□ 0.1
SIK3-210ENST00000480468 TNIKQ9UKE5 1360 aa15.68■□□□□ 0.1
SIK3-210ENST00000480468 MROH2BQ7Z745 1585 aa15.58■□□□□ 0.08
SIK3-210ENST00000480468 EEA1Q15075 1411 aa15.57■□□□□ 0.08
SIK3-210ENST00000480468 BAZ1AQ9NRL2 1556 aaPredicted RBP15.56■□□□□ 0.08
SIK3-210ENST00000480468 CSRNP3Q8WYN3 585 aa15.54■□□□□ 0.08
SIK3-210ENST00000480468 CECR2Q9BXF3 1484 aa15.53■□□□□ 0.08
SIK3-210ENST00000480468 WIZO95785 1651 aa15.52■□□□□ 0.08
SIK3-210ENST00000480468 CCDC88BA6NC98 1476 aa15.48■□□□□ 0.07
SIK3-210ENST00000480468 GOLGA3Q08378 1498 aa15.45■□□□□ 0.06
SIK3-210ENST00000480468 ABCC8Q09428 1581 aa15.43■□□□□ 0.06
SIK3-210ENST00000480468 HNRNPUL2Q1KMD3 747 aaKnown RBP15.41■□□□□ 0.06
SIK3-210ENST00000480468 SOGA1O94964 1423 aa15.41■□□□□ 0.06
SIK3-210ENST00000480468 NACADO15069 1562 aa15.39■□□□□ 0.05
SIK3-210ENST00000480468 UBTFP17480 764 aaKnown RBP15.35■□□□□ 0.05
SIK3-210ENST00000480468 TOP2AP11388 1531 aaKnown RBP15.35■□□□□ 0.05
SIK3-210ENST00000480468 VPS8Q8N3P4 1428 aa15.33■□□□□ 0.04
SIK3-210ENST00000480468 DHX57Q6P158 1386 aaKnown RBP15.32■□□□□ 0.04
SIK3-210ENST00000480468 KIF21BO75037 1637 aa15.31■□□□□ 0.04
SIK3-210ENST00000480468 RBM19Q9Y4C8 960 aaKnown RBP15.29■□□□□ 0.04
SIK3-210ENST00000480468 CEP164Q9UPV0 1460 aa15.29■□□□□ 0.04
SIK3-210ENST00000480468 CLIP1P30622 1438 aa15.28■□□□□ 0.04
SIK3-210ENST00000480468 RUSC2Q8N2Y8 1516 aa15.28■□□□□ 0.04
SIK3-210ENST00000480468 SMARCA2P51531 1590 aa15.27■□□□□ 0.04
SIK3-210ENST00000480468 BAZ1BQ9UIG0 1483 aaKnown RBP15.24■□□□□ 0.03
SIK3-210ENST00000480468 FKBP8Q14318 412 aa15.22■□□□□ 0.03
SIK3-210ENST00000480468 APLP2Q06481 763 aa15.2■□□□□ 0.02
SIK3-210ENST00000480468 MYT1LQ9UL68 1186 aa15.2■□□□□ 0.02
SIK3-210ENST00000480468 CUX2O14529 1486 aa15.19■□□□□ 0.02
SIK3-210ENST00000480468 BCANQ96GW7 911 aa15.18■□□□□ 0.02
SIK3-210ENST00000480468 FANCIQ9NVI1 1328 aa15.17■□□□□ 0.02
SIK3-210ENST00000480468 NEFLP07196 543 aa15.17■□□□□ 0.02
SIK3-210ENST00000480468 PRKCSHP14314 528 aaPredicted RBP15.16■□□□□ 0.02
SIK3-210ENST00000480468 MSH5O43196 834 aa15.13■□□□□ 0.01
SIK3-210ENST00000480468 KCNH8Q96L42 1107 aa15.12■□□□□ 0.01
SIK3-210ENST00000480468 SMARCA4P51532 1647 aa15.12■□□□□ 0.01
SIK3-210ENST00000480468 RRBP1Q9P2E9 1410 aaKnown RBP15.1■□□□□ 0.01
SIK3-210ENST00000480468 CCER2I3L3R5 266 aa15.07■□□□□ 0
SIK3-210ENST00000480468 ERICH6Q7L0X2 663 aa15.05■□□□□ -0
SIK3-210ENST00000480468 RAPGEF2Q9Y4G8 1499 aa15.02□□□□□ -0.01
SIK3-210ENST00000480468 SYNJ1O43426 1573 aa15.01□□□□□ -0.01
SIK3-210ENST00000480468 MAPKBP1O60336 1514 aa14.99□□□□□ -0.01
SIK3-210ENST00000480468 PPP1R15AO75807 674 aaPredicted RBP14.98□□□□□ -0.01
SIK3-210ENST00000480468 ITGAEP38570 1179 aa14.97□□□□□ -0.01
SIK3-210ENST00000480468 CDK11AQ9UQ88 783 aaPredicted RBP14.97□□□□□ -0.01
SIK3-210ENST00000480468 ARAP1Q96P48 1450 aa14.95□□□□□ -0.02
SIK3-210ENST00000480468 ERICH6BQ5W0A0 696 aa14.95□□□□□ -0.02
SIK3-210ENST00000480468 ERICH3Q5RHP9 1530 aa14.95□□□□□ -0.02
SIK3-210ENST00000480468 CCNB3Q8WWL7 1395 aa14.95□□□□□ -0.02
SIK3-210ENST00000480468 DDX10Q13206 875 aaKnown RBP14.94□□□□□ -0.02
SIK3-210ENST00000480468 TIMELESSQ9UNS1 1208 aa14.93□□□□□ -0.02
SIK3-210ENST00000480468 DEKP35659 375 aaKnown RBP14.92□□□□□ -0.02
SIK3-210ENST00000480468 WDR97A6NE52 1622 aa14.91□□□□□ -0.02
SIK3-210ENST00000480468 ANP32CO43423 234 aa14.9□□□□□ -0.02
SIK3-210ENST00000480468 KANK4Q5T7N3 995 aaPredicted RBP14.89□□□□□ -0.03
SIK3-210ENST00000480468 TRIM52Q96A61 297 aa14.89□□□□□ -0.03
SIK3-210ENST00000480468 RAB3GAP2Q9H2M9 1393 aa14.88□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms