RNA–Protein interactions for RNA: ENST00000476379.5

CCDC39-204, Transcript of coiled-coil domain containing 39, humanhuman

TSL 2

Gene CCDC39, Length 4,451 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-204ENST00000476379 NISCHQ9Y2I1 1504 aa9.79□□□□□ -0.84
CCDC39-204ENST00000476379 DCAF8L2P0C7V8 631 aa9.29□□□□□ -0.92
CCDC39-204ENST00000476379 SHROOM4Q9ULL8 1493 aa8.89□□□□□ -0.99
CCDC39-204ENST00000476379 SUPT5HO00267 1087 aaKnown RBP8.77□□□□□ -1.01
CCDC39-204ENST00000476379 ABCC9O60706 1549 aa8.74□□□□□ -1.01
CCDC39-204ENST00000476379 EHMT2Q96KQ7 1210 aa8.63□□□□□ -1.03
CCDC39-204ENST00000476379 PABPN1Q86U42 306 aaKnown RBP eCLIP8.52□□□□□ -1.05
CCDC39-204ENST00000476379 PCGF6Q9BYE7 350 aa8.36□□□□□ -1.07
CCDC39-204ENST00000476379 TTBK1Q5TCY1 1321 aaPredicted RBP8.3□□□□□ -1.08
CCDC39-204ENST00000476379 FAM9AQ8IZU1 332 aaPredicted RBP8.29□□□□□ -1.08
CCDC39-204ENST00000476379 PPARGC1BQ86YN6 1023 aaKnown RBP8.25□□□□□ -1.09
CCDC39-204ENST00000476379 SCRIBQ14160 1630 aa8.18□□□□□ -1.1
CCDC39-204ENST00000476379 LOC105371045A0A1W2PR82 267 aa8.15□□□□□ -1.1
CCDC39-204ENST00000476379 CCDC180Q9P1Z9 1646 aa8.14□□□□□ -1.11
CCDC39-204ENST00000476379 ZCCHC6Q5VYS8 1495 aaKnown RBP8.12□□□□□ -1.11
CCDC39-204ENST00000476379 DNAJC5BQ9UF47 199 aa8.05□□□□□ -1.12
CCDC39-204ENST00000476379 RANGAP1P46060 587 aaPredicted RBP8.03□□□□□ -1.12
CCDC39-204ENST00000476379 CHIC1Q5VXU3 224 aa7.97□□□□□ -1.13
CCDC39-204ENST00000476379 CECR2Q9BXF3 1484 aa7.96□□□□□ -1.14
CCDC39-204ENST00000476379 HRCP23327 699 aa7.95□□□□□ -1.14
CCDC39-204ENST00000476379 YTHDC1Q96MU7 727 aaKnown RBP7.9□□□□□ -1.15
CCDC39-204ENST00000476379 RB1CC1Q8TDY2 1594 aa7.88□□□□□ -1.15
CCDC39-204ENST00000476379 TRIM41Q8WV44 630 aa7.87□□□□□ -1.15
CCDC39-204ENST00000476379 CCER1Q8TC90 406 aaPredicted RBP7.82□□□□□ -1.16
CCDC39-204ENST00000476379 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP7.81□□□□□ -1.16
CCDC39-204ENST00000476379 NACADO15069 1562 aa7.81□□□□□ -1.16
CCDC39-204ENST00000476379 MYO15BQ96JP2 1530 aa7.77□□□□□ -1.17
CCDC39-204ENST00000476379 MROH2BQ7Z745 1585 aa7.76□□□□□ -1.17
CCDC39-204ENST00000476379 RSF1Q96T23 1441 aaPredicted RBP7.74□□□□□ -1.17
CCDC39-204ENST00000476379 TRIM26Q12899 539 aaPredicted RBP7.72□□□□□ -1.17
CCDC39-204ENST00000476379 UBTFP17480 764 aaKnown RBP7.69□□□□□ -1.18
CCDC39-204ENST00000476379 BICRAQ9NZM4 1560 aa7.68□□□□□ -1.18
CCDC39-204ENST00000476379 WIZO95785 1651 aa7.67□□□□□ -1.18
CCDC39-204ENST00000476379 HNRNPUL2Q1KMD3 747 aaKnown RBP7.67□□□□□ -1.18
CCDC39-204ENST00000476379 UNC13AQ9UPW8 1703 aa7.65□□□□□ -1.19
CCDC39-204ENST00000476379 DCAF1Q9Y4B6 1507 aa7.65□□□□□ -1.19
CCDC39-204ENST00000476379 ITGAEP38570 1179 aa7.64□□□□□ -1.19
CCDC39-204ENST00000476379 FBLN2P98095 1184 aa7.63□□□□□ -1.19
CCDC39-204ENST00000476379 ATP1B4Q9UN42 357 aaPredicted RBP7.62□□□□□ -1.19
CCDC39-204ENST00000476379 ARID3CA6NKF2 412 aa7.61□□□□□ -1.19
CCDC39-204ENST00000476379 CNGB1Q14028 1251 aaPredicted RBP7.59□□□□□ -1.19
CCDC39-204ENST00000476379 NESP48681 1621 aa7.59□□□□□ -1.2
CCDC39-204ENST00000476379 BAZ1BQ9UIG0 1483 aaKnown RBP7.57□□□□□ -1.2
CCDC39-204ENST00000476379 APLP2Q06481 763 aa7.57□□□□□ -1.2
CCDC39-204ENST00000476379 GTF3C3Q9Y5Q9 886 aa7.56□□□□□ -1.2
CCDC39-204ENST00000476379 EIF4G1Q04637 1599 aaKnown RBP7.56□□□□□ -1.2
CCDC39-204ENST00000476379 P3H3Q8IVL6 736 aa7.55□□□□□ -1.2
CCDC39-204ENST00000476379 SCAF1Q9H7N4 1312 aaKnown RBP7.55□□□□□ -1.2
CCDC39-204ENST00000476379 ATAD2BQ9ULI0 1458 aa7.54□□□□□ -1.2
CCDC39-204ENST00000476379 DIEXFQ68CQ4 756 aaKnown RBP7.54□□□□□ -1.2
CCDC39-204ENST00000476379 CC2D2AQ9P2K1 1620 aa7.53□□□□□ -1.2
CCDC39-204ENST00000476379 CCDC88BA6NC98 1476 aa7.53□□□□□ -1.2
CCDC39-204ENST00000476379 ABCC8Q09428 1581 aa7.53□□□□□ -1.2
CCDC39-204ENST00000476379 CENPBP07199 599 aaPredicted RBP7.52□□□□□ -1.21
CCDC39-204ENST00000476379 ZEB1P37275 1124 aaPredicted RBP7.52□□□□□ -1.21
CCDC39-204ENST00000476379 BAZ1AQ9NRL2 1556 aaPredicted RBP7.51□□□□□ -1.21
CCDC39-204ENST00000476379 SMARCA4P51532 1647 aa7.5□□□□□ -1.21
CCDC39-204ENST00000476379 BCANQ96GW7 911 aa7.5□□□□□ -1.21
CCDC39-204ENST00000476379 NEUROD1Q13562 356 aa7.5□□□□□ -1.21
CCDC39-204ENST00000476379 ERCC6Q03468 1493 aa7.44□□□□□ -1.22
CCDC39-204ENST00000476379 TDRD9Q8NDG6 1382 aaKnown RBP7.43□□□□□ -1.22
CCDC39-204ENST00000476379 SMARCA2P51531 1590 aa7.42□□□□□ -1.22
CCDC39-204ENST00000476379 RUSC2Q8N2Y8 1516 aa7.42□□□□□ -1.22
CCDC39-204ENST00000476379 SOGA1O94964 1423 aa7.41□□□□□ -1.22
CCDC39-204ENST00000476379 ACIN1Q9UKV3 1341 aaKnown RBP7.39□□□□□ -1.23
CCDC39-204ENST00000476379 HIRIP3Q9BW71 556 aaPredicted RBP7.38□□□□□ -1.23
CCDC39-204ENST00000476379 SENP3-EIF4A1A0A087X0R7 540 aa7.37□□□□□ -1.23
CCDC39-204ENST00000476379 POLR3GLQ9BT43 218 aa7.36□□□□□ -1.23
CCDC39-204ENST00000476379 RAD54L2Q9Y4B4 1467 aa7.36□□□□□ -1.23
CCDC39-204ENST00000476379 CADPSQ9ULU8 1353 aa7.36□□□□□ -1.23
CCDC39-204ENST00000476379 TOP2AP11388 1531 aaKnown RBP7.35□□□□□ -1.23
CCDC39-204ENST00000476379 WRNQ14191 1432 aaPredicted RBP eCLIP7.34□□□□□ -1.23
CCDC39-204ENST00000476379 NCAPD3P42695 1498 aa7.33□□□□□ -1.24
CCDC39-204ENST00000476379 MIER1Q8N108 512 aa7.33□□□□□ -1.24
CCDC39-204ENST00000476379 CSRNP3Q8WYN3 585 aa7.33□□□□□ -1.24
CCDC39-204ENST00000476379 FANCD2Q9BXW9 1451 aa7.31□□□□□ -1.24
CCDC39-204ENST00000476379 PELP1Q8IZL8 1130 aaKnown RBP7.31□□□□□ -1.24
CCDC39-204ENST00000476379 AQRO60306 1485 aaKnown RBP eCLIP7.3□□□□□ -1.24
CCDC39-204ENST00000476379 CHMP7Q8WUX9 453 aaPredicted RBP7.3□□□□□ -1.24
CCDC39-204ENST00000476379 ZNF316A6NFI3 1004 aaPredicted RBP7.29□□□□□ -1.24
CCDC39-204ENST00000476379 FAM50AQ14320 339 aaKnown RBP7.29□□□□□ -1.24
CCDC39-204ENST00000476379 CUX2O14529 1486 aa7.27□□□□□ -1.25
CCDC39-204ENST00000476379 IRX6P78412 446 aaPredicted RBP7.25□□□□□ -1.25
CCDC39-204ENST00000476379 TRIM52Q96A61 297 aa7.24□□□□□ -1.25
CCDC39-204ENST00000476379 ZNF608Q9ULD9 1512 aaPredicted RBP7.23□□□□□ -1.25
CCDC39-204ENST00000476379 SENP3Q9H4L4 574 aaPredicted RBP7.23□□□□□ -1.25
CCDC39-204ENST00000476379 CEP164Q9UPV0 1460 aa7.23□□□□□ -1.25
CCDC39-204ENST00000476379 PLPPR3Q6T4P5 718 aa7.23□□□□□ -1.25
CCDC39-204ENST00000476379 PDS5BQ9NTI5 1447 aa7.22□□□□□ -1.25
CCDC39-204ENST00000476379 SYNJ1O43426 1573 aa7.22□□□□□ -1.25
CCDC39-204ENST00000476379 ERICH6Q7L0X2 663 aa7.22□□□□□ -1.25
CCDC39-204ENST00000476379 FGD5Q6ZNL6 1462 aa7.22□□□□□ -1.25
CCDC39-204ENST00000476379 MYT1Q01538 1121 aa7.22□□□□□ -1.25
CCDC39-204ENST00000476379 NEFLP07196 543 aa7.21□□□□□ -1.26
CCDC39-204ENST00000476379 CFTRP13569 1480 aa7.21□□□□□ -1.26
CCDC39-204ENST00000476379 DDX10Q13206 875 aaKnown RBP7.21□□□□□ -1.26
CCDC39-204ENST00000476379 KCNH8Q96L42 1107 aa7.2□□□□□ -1.26
CCDC39-204ENST00000476379 CYB5RLQ6IPT4 315 aa7.2□□□□□ -1.26
CCDC39-204ENST00000476379 CUX1P39880 1505 aa7.2□□□□□ -1.26
CCDC39-204ENST00000476379 URB2Q14146 1524 aaKnown RBP7.19□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms