RNA–Protein interactions for RNA: ENST00000475323.5

ARHGEF39-203, Transcript of Rho guanine nucleotide exchange factor 39, humanhuman

TSL 2

Gene ARHGEF39, Length 2,862 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ARHGEF39-203ENST00000475323 NISCHQ9Y2I1 1504 aa26.92■■□□□ 1.9
ARHGEF39-203ENST00000475323 SHROOM4Q9ULL8 1493 aa23.59■■□□□ 1.37
ARHGEF39-203ENST00000475323 SUPT5HO00267 1087 aaKnown RBP23.28■■□□□ 1.32
ARHGEF39-203ENST00000475323 ZCCHC6Q5VYS8 1495 aaKnown RBP22.82■■□□□ 1.24
ARHGEF39-203ENST00000475323 MYO15BQ96JP2 1530 aa22.76■■□□□ 1.23
ARHGEF39-203ENST00000475323 CHIC1Q5VXU3 224 aa22.69■■□□□ 1.22
ARHGEF39-203ENST00000475323 CCDC180Q9P1Z9 1646 aa22.66■■□□□ 1.22
ARHGEF39-203ENST00000475323 HRCP23327 699 aa22.61■■□□□ 1.21
ARHGEF39-203ENST00000475323 DCAF8L2P0C7V8 631 aa22.6■■□□□ 1.21
ARHGEF39-203ENST00000475323 PCGF6Q9BYE7 350 aa22.48■■□□□ 1.19
ARHGEF39-203ENST00000475323 PPARGC1BQ86YN6 1023 aaKnown RBP22.32■■□□□ 1.16
ARHGEF39-203ENST00000475323 LOC105371045A0A1W2PR82 267 aa22.2■■□□□ 1.14
ARHGEF39-203ENST00000475323 DCAF1Q9Y4B6 1507 aa22■■□□□ 1.11
ARHGEF39-203ENST00000475323 TRIM26Q12899 539 aaPredicted RBP21.79■■□□□ 1.08
ARHGEF39-203ENST00000475323 ABCC9O60706 1549 aa21.59■■□□□ 1.05
ARHGEF39-203ENST00000475323 FAM9AQ8IZU1 332 aaPredicted RBP21.56■■□□□ 1.04
ARHGEF39-203ENST00000475323 TRIM41Q8WV44 630 aa21.53■■□□□ 1.04
ARHGEF39-203ENST00000475323 RSF1Q96T23 1441 aaPredicted RBP21.53■■□□□ 1.04
ARHGEF39-203ENST00000475323 EHMT2Q96KQ7 1210 aa21.52■■□□□ 1.04
ARHGEF39-203ENST00000475323 SCRIBQ14160 1630 aa21.47■■□□□ 1.03
ARHGEF39-203ENST00000475323 RB1CC1Q8TDY2 1594 aa21.4■■□□□ 1.02
ARHGEF39-203ENST00000475323 ZEB1P37275 1124 aaPredicted RBP21.36■■□□□ 1.01
ARHGEF39-203ENST00000475323 PELP1Q8IZL8 1130 aaKnown RBP21.21■□□□□ 0.99
ARHGEF39-203ENST00000475323 SCAF1Q9H7N4 1312 aaKnown RBP21.18■□□□□ 0.98
ARHGEF39-203ENST00000475323 CECR2Q9BXF3 1484 aa21.14■□□□□ 0.97
ARHGEF39-203ENST00000475323 MROH2BQ7Z745 1585 aa21.05■□□□□ 0.96
ARHGEF39-203ENST00000475323 NACADO15069 1562 aa21.04■□□□□ 0.96
ARHGEF39-203ENST00000475323 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.03■□□□□ 0.96
ARHGEF39-203ENST00000475323 WIZO95785 1651 aa20.97■□□□□ 0.95
ARHGEF39-203ENST00000475323 CCER1Q8TC90 406 aaPredicted RBP20.91■□□□□ 0.94
ARHGEF39-203ENST00000475323 TTBK1Q5TCY1 1321 aaPredicted RBP20.88■□□□□ 0.93
ARHGEF39-203ENST00000475323 NEUROD1Q13562 356 aa20.79■□□□□ 0.92
ARHGEF39-203ENST00000475323 ACIN1Q9UKV3 1341 aaKnown RBP20.75■□□□□ 0.91
ARHGEF39-203ENST00000475323 EIF4G1Q04637 1599 aaKnown RBP20.72■□□□□ 0.91
ARHGEF39-203ENST00000475323 BAZ1AQ9NRL2 1556 aaPredicted RBP20.72■□□□□ 0.91
ARHGEF39-203ENST00000475323 ABCC8Q09428 1581 aa20.7■□□□□ 0.9
ARHGEF39-203ENST00000475323 MYT1Q01538 1121 aa20.69■□□□□ 0.9
ARHGEF39-203ENST00000475323 DIEXFQ68CQ4 756 aaKnown RBP20.69■□□□□ 0.9
ARHGEF39-203ENST00000475323 CCDC88BA6NC98 1476 aa20.67■□□□□ 0.9
ARHGEF39-203ENST00000475323 GTF3C3Q9Y5Q9 886 aa20.6■□□□□ 0.89
ARHGEF39-203ENST00000475323 CEP162Q5TB80 1403 aa20.59■□□□□ 0.89
ARHGEF39-203ENST00000475323 SOGA1O94964 1423 aa20.59■□□□□ 0.89
ARHGEF39-203ENST00000475323 WRNQ14191 1432 aaPredicted RBP eCLIP20.55■□□□□ 0.88
ARHGEF39-203ENST00000475323 RUSC2Q8N2Y8 1516 aa20.5■□□□□ 0.87
ARHGEF39-203ENST00000475323 TOP2AP11388 1531 aaKnown RBP20.5■□□□□ 0.87
ARHGEF39-203ENST00000475323 CENPBP07199 599 aaPredicted RBP20.49■□□□□ 0.87
ARHGEF39-203ENST00000475323 UBTFP17480 764 aaKnown RBP20.49■□□□□ 0.87
ARHGEF39-203ENST00000475323 UNC13AQ9UPW8 1703 aa20.47■□□□□ 0.87
ARHGEF39-203ENST00000475323 SMARCA2P51531 1590 aa20.46■□□□□ 0.87
ARHGEF39-203ENST00000475323 TNIKQ9UKE5 1360 aa20.46■□□□□ 0.87
ARHGEF39-203ENST00000475323 CSRNP3Q8WYN3 585 aa20.44■□□□□ 0.86
ARHGEF39-203ENST00000475323 SMARCA4P51532 1647 aa20.42■□□□□ 0.86
ARHGEF39-203ENST00000475323 ZNF316A6NFI3 1004 aaPredicted RBP20.39■□□□□ 0.85
ARHGEF39-203ENST00000475323 YTHDC1Q96MU7 727 aaKnown RBP20.38■□□□□ 0.85
ARHGEF39-203ENST00000475323 PABPN1Q86U42 306 aaKnown RBP eCLIP20.35■□□□□ 0.85
ARHGEF39-203ENST00000475323 HNRNPUL2Q1KMD3 747 aaKnown RBP20.34■□□□□ 0.85
ARHGEF39-203ENST00000475323 EEA1Q15075 1411 aa20.27■□□□□ 0.84
ARHGEF39-203ENST00000475323 GOLGA3Q08378 1498 aa20.26■□□□□ 0.83
ARHGEF39-203ENST00000475323 MIER1Q8N108 512 aa20.26■□□□□ 0.83
ARHGEF39-203ENST00000475323 BICRAQ9NZM4 1560 aa20.22■□□□□ 0.83
ARHGEF39-203ENST00000475323 RANGAP1P46060 587 aaPredicted RBP20.19■□□□□ 0.82
ARHGEF39-203ENST00000475323 CLIP1P30622 1438 aa20.12■□□□□ 0.81
ARHGEF39-203ENST00000475323 SYNJ1O43426 1573 aa20.11■□□□□ 0.81
ARHGEF39-203ENST00000475323 CEP164Q9UPV0 1460 aa20.1■□□□□ 0.81
ARHGEF39-203ENST00000475323 VPS8Q8N3P4 1428 aa20.03■□□□□ 0.8
ARHGEF39-203ENST00000475323 APLP2Q06481 763 aa20.03■□□□□ 0.8
ARHGEF39-203ENST00000475323 RAPGEF2Q9Y4G8 1499 aa20.02■□□□□ 0.8
ARHGEF39-203ENST00000475323 KIF21BO75037 1637 aa20.02■□□□□ 0.8
ARHGEF39-203ENST00000475323 PEG3Q9GZU2 1588 aa19.89■□□□□ 0.77
ARHGEF39-203ENST00000475323 BAZ1BQ9UIG0 1483 aaKnown RBP19.88■□□□□ 0.77
ARHGEF39-203ENST00000475323 KANK4Q5T7N3 995 aaPredicted RBP19.84■□□□□ 0.77
ARHGEF39-203ENST00000475323 ATAD2BQ9ULI0 1458 aa19.84■□□□□ 0.77
ARHGEF39-203ENST00000475323 DHX57Q6P158 1386 aaKnown RBP19.84■□□□□ 0.77
ARHGEF39-203ENST00000475323 ARAP1Q96P48 1450 aa19.74■□□□□ 0.75
ARHGEF39-203ENST00000475323 TOP2BQ02880 1626 aa19.73■□□□□ 0.75
ARHGEF39-203ENST00000475323 SUPT16HQ9Y5B9 1047 aaKnown RBP19.71■□□□□ 0.75
ARHGEF39-203ENST00000475323 CLSPNQ9HAW4 1339 aa19.71■□□□□ 0.75
ARHGEF39-203ENST00000475323 ITGAEP38570 1179 aa19.7■□□□□ 0.74
ARHGEF39-203ENST00000475323 PRXQ9BXM0 1461 aa19.67■□□□□ 0.74
ARHGEF39-203ENST00000475323 KCNH8Q96L42 1107 aa19.63■□□□□ 0.73
ARHGEF39-203ENST00000475323 ERICH3Q5RHP9 1530 aa19.61■□□□□ 0.73
ARHGEF39-203ENST00000475323 BIVM-ERCC5R4GMW8 1640 aa19.61■□□□□ 0.73
ARHGEF39-203ENST00000475323 RRBP1Q9P2E9 1410 aaKnown RBP19.6■□□□□ 0.73
ARHGEF39-203ENST00000475323 CCNB3Q8WWL7 1395 aa19.56■□□□□ 0.72
ARHGEF39-203ENST00000475323 CUX1P39880 1505 aa19.54■□□□□ 0.72
ARHGEF39-203ENST00000475323 ARHGAP35Q9NRY4 1499 aa19.52■□□□□ 0.71
ARHGEF39-203ENST00000475323 TSHZ2Q9NRE2 1034 aa19.5■□□□□ 0.71
ARHGEF39-203ENST00000475323 KIF27Q86VH2 1401 aa19.49■□□□□ 0.71
ARHGEF39-203ENST00000475323 CUX2O14529 1486 aa19.49■□□□□ 0.71
ARHGEF39-203ENST00000475323 RAB3GAP2Q9H2M9 1393 aa19.48■□□□□ 0.71
ARHGEF39-203ENST00000475323 NCAPD3P42695 1498 aa19.47■□□□□ 0.71
ARHGEF39-203ENST00000475323 BCANQ96GW7 911 aa19.45■□□□□ 0.7
ARHGEF39-203ENST00000475323 MAPKBP1O60336 1514 aa19.44■□□□□ 0.7
ARHGEF39-203ENST00000475323 HMGXB3Q12766 1538 aa19.44■□□□□ 0.7
ARHGEF39-203ENST00000475323 SIN3AQ96ST3 1273 aa19.43■□□□□ 0.7
ARHGEF39-203ENST00000475323 DDX10Q13206 875 aaKnown RBP19.42■□□□□ 0.7
ARHGEF39-203ENST00000475323 HIRIP3Q9BW71 556 aaPredicted RBP19.38■□□□□ 0.69
ARHGEF39-203ENST00000475323 PRKCSHP14314 528 aaPredicted RBP19.37■□□□□ 0.69
ARHGEF39-203ENST00000475323 FAM50AQ14320 339 aaKnown RBP19.35■□□□□ 0.69
ARHGEF39-203ENST00000475323 WDR97A6NE52 1622 aa19.35■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 136.2 ms