RNA–Protein interactions for RNA: ENST00000475255.5

SEMA4D-217, Transcript of semaphorin 4D, humanhuman

TSL 1 (best)

Gene SEMA4D, Length 3,053 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA4D-217ENST00000475255 NISCHQ9Y2I1 1504 aa26.77■■□□□ 1.88
SEMA4D-217ENST00000475255 SHROOM4Q9ULL8 1493 aa23.89■■□□□ 1.41
SEMA4D-217ENST00000475255 SUPT5HO00267 1087 aaKnown RBP23.63■■□□□ 1.37
SEMA4D-217ENST00000475255 MYO15BQ96JP2 1530 aa22.99■■□□□ 1.27
SEMA4D-217ENST00000475255 HRCP23327 699 aa22.98■■□□□ 1.27
SEMA4D-217ENST00000475255 PCGF6Q9BYE7 350 aa22.93■■□□□ 1.26
SEMA4D-217ENST00000475255 CHIC1Q5VXU3 224 aa22.91■■□□□ 1.26
SEMA4D-217ENST00000475255 DCAF8L2P0C7V8 631 aa22.89■■□□□ 1.25
SEMA4D-217ENST00000475255 PPARGC1BQ86YN6 1023 aaKnown RBP22.84■■□□□ 1.25
SEMA4D-217ENST00000475255 ZCCHC6Q5VYS8 1495 aaKnown RBP22.67■■□□□ 1.22
SEMA4D-217ENST00000475255 LOC105371045A0A1W2PR82 267 aa22.54■■□□□ 1.2
SEMA4D-217ENST00000475255 CCDC180Q9P1Z9 1646 aa22.19■■□□□ 1.14
SEMA4D-217ENST00000475255 DCAF1Q9Y4B6 1507 aa22.11■■□□□ 1.13
SEMA4D-217ENST00000475255 TRIM26Q12899 539 aaPredicted RBP22.05■■□□□ 1.12
SEMA4D-217ENST00000475255 EHMT2Q96KQ7 1210 aa22.03■■□□□ 1.12
SEMA4D-217ENST00000475255 FAM9AQ8IZU1 332 aaPredicted RBP21.95■■□□□ 1.1
SEMA4D-217ENST00000475255 TRIM41Q8WV44 630 aa21.74■■□□□ 1.07
SEMA4D-217ENST00000475255 SCAF1Q9H7N4 1312 aaKnown RBP21.64■■□□□ 1.05
SEMA4D-217ENST00000475255 ZEB1P37275 1124 aaPredicted RBP21.59■■□□□ 1.05
SEMA4D-217ENST00000475255 RSF1Q96T23 1441 aaPredicted RBP21.51■■□□□ 1.03
SEMA4D-217ENST00000475255 ABCC9O60706 1549 aa21.46■■□□□ 1.03
SEMA4D-217ENST00000475255 SCRIBQ14160 1630 aa21.44■■□□□ 1.02
SEMA4D-217ENST00000475255 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.42■■□□□ 1.02
SEMA4D-217ENST00000475255 RB1CC1Q8TDY2 1594 aa21.41■■□□□ 1.02
SEMA4D-217ENST00000475255 TTBK1Q5TCY1 1321 aaPredicted RBP21.38■■□□□ 1.01
SEMA4D-217ENST00000475255 PELP1Q8IZL8 1130 aaKnown RBP21.34■■□□□ 1.01
SEMA4D-217ENST00000475255 CCER1Q8TC90 406 aaPredicted RBP21.27■■□□□ 1
SEMA4D-217ENST00000475255 NEUROD1Q13562 356 aa21.23■□□□□ 0.99
SEMA4D-217ENST00000475255 CECR2Q9BXF3 1484 aa21.14■□□□□ 0.97
SEMA4D-217ENST00000475255 ACIN1Q9UKV3 1341 aaKnown RBP21.13■□□□□ 0.97
SEMA4D-217ENST00000475255 GTF3C3Q9Y5Q9 886 aa21.06■□□□□ 0.96
SEMA4D-217ENST00000475255 DIEXFQ68CQ4 756 aaKnown RBP21.05■□□□□ 0.96
SEMA4D-217ENST00000475255 MROH2BQ7Z745 1585 aa21.01■□□□□ 0.95
SEMA4D-217ENST00000475255 WIZO95785 1651 aa20.92■□□□□ 0.94
SEMA4D-217ENST00000475255 YTHDC1Q96MU7 727 aaKnown RBP20.91■□□□□ 0.94
SEMA4D-217ENST00000475255 CENPBP07199 599 aaPredicted RBP20.87■□□□□ 0.93
SEMA4D-217ENST00000475255 ABCC8Q09428 1581 aa20.76■□□□□ 0.91
SEMA4D-217ENST00000475255 UBTFP17480 764 aaKnown RBP20.74■□□□□ 0.91
SEMA4D-217ENST00000475255 CCDC88BA6NC98 1476 aa20.73■□□□□ 0.91
SEMA4D-217ENST00000475255 CEP162Q5TB80 1403 aa20.7■□□□□ 0.9
SEMA4D-217ENST00000475255 SOGA1O94964 1423 aa20.69■□□□□ 0.9
SEMA4D-217ENST00000475255 HNRNPUL2Q1KMD3 747 aaKnown RBP20.68■□□□□ 0.9
SEMA4D-217ENST00000475255 ZNF316A6NFI3 1004 aaPredicted RBP20.67■□□□□ 0.9
SEMA4D-217ENST00000475255 MIER1Q8N108 512 aa20.62■□□□□ 0.89
SEMA4D-217ENST00000475255 RUSC2Q8N2Y8 1516 aa20.61■□□□□ 0.89
SEMA4D-217ENST00000475255 RANGAP1P46060 587 aaPredicted RBP20.59■□□□□ 0.89
SEMA4D-217ENST00000475255 BAZ1AQ9NRL2 1556 aaPredicted RBP20.57■□□□□ 0.88
SEMA4D-217ENST00000475255 EIF4G1Q04637 1599 aaKnown RBP20.57■□□□□ 0.88
SEMA4D-217ENST00000475255 CSRNP3Q8WYN3 585 aa20.55■□□□□ 0.88
SEMA4D-217ENST00000475255 WRNQ14191 1432 aaPredicted RBP eCLIP20.55■□□□□ 0.88
SEMA4D-217ENST00000475255 NACADO15069 1562 aa20.54■□□□□ 0.88
SEMA4D-217ENST00000475255 TNIKQ9UKE5 1360 aa20.49■□□□□ 0.87
SEMA4D-217ENST00000475255 TOP2AP11388 1531 aaKnown RBP20.37■□□□□ 0.85
SEMA4D-217ENST00000475255 SMARCA2P51531 1590 aa20.36■□□□□ 0.85
SEMA4D-217ENST00000475255 MYT1Q01538 1121 aa20.31■□□□□ 0.84
SEMA4D-217ENST00000475255 GOLGA3Q08378 1498 aa20.29■□□□□ 0.84
SEMA4D-217ENST00000475255 PABPN1Q86U42 306 aaKnown RBP eCLIP20.29■□□□□ 0.84
SEMA4D-217ENST00000475255 SMARCA4P51532 1647 aa20.26■□□□□ 0.83
SEMA4D-217ENST00000475255 APLP2Q06481 763 aa20.26■□□□□ 0.83
SEMA4D-217ENST00000475255 CLIP1P30622 1438 aa20.22■□□□□ 0.83
SEMA4D-217ENST00000475255 EEA1Q15075 1411 aa20.2■□□□□ 0.82
SEMA4D-217ENST00000475255 CEP164Q9UPV0 1460 aa20.09■□□□□ 0.81
SEMA4D-217ENST00000475255 RAPGEF2Q9Y4G8 1499 aa20.09■□□□□ 0.81
SEMA4D-217ENST00000475255 VPS8Q8N3P4 1428 aa20.08■□□□□ 0.81
SEMA4D-217ENST00000475255 SYNJ1O43426 1573 aa20.07■□□□□ 0.8
SEMA4D-217ENST00000475255 SUPT16HQ9Y5B9 1047 aaKnown RBP20.06■□□□□ 0.8
SEMA4D-217ENST00000475255 ITGAEP38570 1179 aa20.06■□□□□ 0.8
SEMA4D-217ENST00000475255 KANK4Q5T7N3 995 aaPredicted RBP20.02■□□□□ 0.8
SEMA4D-217ENST00000475255 KCNH8Q96L42 1107 aa20.01■□□□□ 0.79
SEMA4D-217ENST00000475255 DHX57Q6P158 1386 aaKnown RBP19.99■□□□□ 0.79
SEMA4D-217ENST00000475255 UNC13AQ9UPW8 1703 aa19.97■□□□□ 0.79
SEMA4D-217ENST00000475255 BCANQ96GW7 911 aa19.95■□□□□ 0.78
SEMA4D-217ENST00000475255 KIF21BO75037 1637 aa19.95■□□□□ 0.78
SEMA4D-217ENST00000475255 TSHZ2Q9NRE2 1034 aa19.89■□□□□ 0.77
SEMA4D-217ENST00000475255 BAZ1BQ9UIG0 1483 aaKnown RBP19.81■□□□□ 0.76
SEMA4D-217ENST00000475255 HIRIP3Q9BW71 556 aaPredicted RBP19.77■□□□□ 0.76
SEMA4D-217ENST00000475255 ARAP1Q96P48 1450 aa19.77■□□□□ 0.75
SEMA4D-217ENST00000475255 CLSPNQ9HAW4 1339 aa19.75■□□□□ 0.75
SEMA4D-217ENST00000475255 DDX10Q13206 875 aaKnown RBP19.74■□□□□ 0.75
SEMA4D-217ENST00000475255 BICRAQ9NZM4 1560 aa19.74■□□□□ 0.75
SEMA4D-217ENST00000475255 ATAD2BQ9ULI0 1458 aa19.72■□□□□ 0.75
SEMA4D-217ENST00000475255 FKBP8Q14318 412 aa19.72■□□□□ 0.75
SEMA4D-217ENST00000475255 SIN3AQ96ST3 1273 aa19.7■□□□□ 0.74
SEMA4D-217ENST00000475255 CCNB3Q8WWL7 1395 aa19.67■□□□□ 0.74
SEMA4D-217ENST00000475255 ANP32EQ9BTT0 268 aa19.65■□□□□ 0.74
SEMA4D-217ENST00000475255 RAB3GAP2Q9H2M9 1393 aa19.64■□□□□ 0.73
SEMA4D-217ENST00000475255 TRIM52Q96A61 297 aa19.63■□□□□ 0.73
SEMA4D-217ENST00000475255 PRXQ9BXM0 1461 aa19.62■□□□□ 0.73
SEMA4D-217ENST00000475255 PEG3Q9GZU2 1588 aa19.62■□□□□ 0.73
SEMA4D-217ENST00000475255 RRBP1Q9P2E9 1410 aaKnown RBP19.61■□□□□ 0.73
SEMA4D-217ENST00000475255 ATP1B4Q9UN42 357 aaPredicted RBP19.61■□□□□ 0.73
SEMA4D-217ENST00000475255 FAM50AQ14320 339 aaKnown RBP19.6■□□□□ 0.73
SEMA4D-217ENST00000475255 TOP2BQ02880 1626 aa19.6■□□□□ 0.73
SEMA4D-217ENST00000475255 P3H3Q8IVL6 736 aa19.57■□□□□ 0.72
SEMA4D-217ENST00000475255 ARHGAP35Q9NRY4 1499 aa19.53■□□□□ 0.72
SEMA4D-217ENST00000475255 MAPKBP1O60336 1514 aa19.52■□□□□ 0.71
SEMA4D-217ENST00000475255 ERICH3Q5RHP9 1530 aa19.51■□□□□ 0.71
SEMA4D-217ENST00000475255 WDR97A6NE52 1622 aa19.5■□□□□ 0.71
SEMA4D-217ENST00000475255 KIF27Q86VH2 1401 aa19.48■□□□□ 0.71
SEMA4D-217ENST00000475255 CUX1P39880 1505 aa19.47■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms