RNA–Protein interactions for RNA: ENST00000473562.1

NOTCH4-203, Transcript of notch 4, humanhuman

TSL 1 (best)

Gene NOTCH4, Length 3,075 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NOTCH4-203ENST00000473562 NISCHQ9Y2I1 1504 aa25.78■■□□□ 1.72
NOTCH4-203ENST00000473562 SHROOM4Q9ULL8 1493 aa23.24■■□□□ 1.31
NOTCH4-203ENST00000473562 SUPT5HO00267 1087 aaKnown RBP22.95■■□□□ 1.26
NOTCH4-203ENST00000473562 DCAF8L2P0C7V8 631 aa22.37■■□□□ 1.17
NOTCH4-203ENST00000473562 MYO15BQ96JP2 1530 aa22.17■■□□□ 1.14
NOTCH4-203ENST00000473562 PCGF6Q9BYE7 350 aa22.15■■□□□ 1.14
NOTCH4-203ENST00000473562 CHIC1Q5VXU3 224 aa22.08■■□□□ 1.13
NOTCH4-203ENST00000473562 PPARGC1BQ86YN6 1023 aaKnown RBP22.08■■□□□ 1.13
NOTCH4-203ENST00000473562 HRCP23327 699 aa22.03■■□□□ 1.12
NOTCH4-203ENST00000473562 LOC105371045A0A1W2PR82 267 aa21.85■■□□□ 1.09
NOTCH4-203ENST00000473562 ZCCHC6Q5VYS8 1495 aaKnown RBP21.8■■□□□ 1.08
NOTCH4-203ENST00000473562 EHMT2Q96KQ7 1210 aa21.55■■□□□ 1.04
NOTCH4-203ENST00000473562 CCDC180Q9P1Z9 1646 aa21.37■■□□□ 1.01
NOTCH4-203ENST00000473562 FAM9AQ8IZU1 332 aaPredicted RBP21.36■■□□□ 1.01
NOTCH4-203ENST00000473562 TRIM26Q12899 539 aaPredicted RBP21.19■□□□□ 0.98
NOTCH4-203ENST00000473562 DCAF1Q9Y4B6 1507 aa21.14■□□□□ 0.97
NOTCH4-203ENST00000473562 TRIM41Q8WV44 630 aa21.03■□□□□ 0.96
NOTCH4-203ENST00000473562 TTBK1Q5TCY1 1321 aaPredicted RBP20.87■□□□□ 0.93
NOTCH4-203ENST00000473562 SCAF1Q9H7N4 1312 aaKnown RBP20.78■□□□□ 0.92
NOTCH4-203ENST00000473562 SCRIBQ14160 1630 aa20.76■□□□□ 0.91
NOTCH4-203ENST00000473562 RSF1Q96T23 1441 aaPredicted RBP20.74■□□□□ 0.91
NOTCH4-203ENST00000473562 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.72■□□□□ 0.91
NOTCH4-203ENST00000473562 RB1CC1Q8TDY2 1594 aa20.67■□□□□ 0.9
NOTCH4-203ENST00000473562 ZEB1P37275 1124 aaPredicted RBP20.64■□□□□ 0.89
NOTCH4-203ENST00000473562 ABCC9O60706 1549 aa20.62■□□□□ 0.89
NOTCH4-203ENST00000473562 CCER1Q8TC90 406 aaPredicted RBP20.53■□□□□ 0.88
NOTCH4-203ENST00000473562 CECR2Q9BXF3 1484 aa20.47■□□□□ 0.87
NOTCH4-203ENST00000473562 NEUROD1Q13562 356 aa20.41■□□□□ 0.86
NOTCH4-203ENST00000473562 MROH2BQ7Z745 1585 aa20.29■□□□□ 0.84
NOTCH4-203ENST00000473562 GTF3C3Q9Y5Q9 886 aa20.26■□□□□ 0.83
NOTCH4-203ENST00000473562 DIEXFQ68CQ4 756 aaKnown RBP20.25■□□□□ 0.83
NOTCH4-203ENST00000473562 ACIN1Q9UKV3 1341 aaKnown RBP20.25■□□□□ 0.83
NOTCH4-203ENST00000473562 YTHDC1Q96MU7 727 aaKnown RBP20.25■□□□□ 0.83
NOTCH4-203ENST00000473562 WIZO95785 1651 aa20.22■□□□□ 0.83
NOTCH4-203ENST00000473562 PELP1Q8IZL8 1130 aaKnown RBP20.19■□□□□ 0.82
NOTCH4-203ENST00000473562 RANGAP1P46060 587 aaPredicted RBP20.13■□□□□ 0.81
NOTCH4-203ENST00000473562 UBTFP17480 764 aaKnown RBP20.1■□□□□ 0.81
NOTCH4-203ENST00000473562 ABCC8Q09428 1581 aa20.09■□□□□ 0.81
NOTCH4-203ENST00000473562 HNRNPUL2Q1KMD3 747 aaKnown RBP20.04■□□□□ 0.8
NOTCH4-203ENST00000473562 CCDC88BA6NC98 1476 aa20.03■□□□□ 0.8
NOTCH4-203ENST00000473562 SOGA1O94964 1423 aa20■□□□□ 0.79
NOTCH4-203ENST00000473562 CENPBP07199 599 aaPredicted RBP19.99■□□□□ 0.79
NOTCH4-203ENST00000473562 CEP162Q5TB80 1403 aa19.94■□□□□ 0.78
NOTCH4-203ENST00000473562 RUSC2Q8N2Y8 1516 aa19.94■□□□□ 0.78
NOTCH4-203ENST00000473562 NACADO15069 1562 aa19.91■□□□□ 0.78
NOTCH4-203ENST00000473562 MIER1Q8N108 512 aa19.87■□□□□ 0.77
NOTCH4-203ENST00000473562 ZNF316A6NFI3 1004 aaPredicted RBP19.86■□□□□ 0.77
NOTCH4-203ENST00000473562 CSRNP3Q8WYN3 585 aa19.83■□□□□ 0.77
NOTCH4-203ENST00000473562 PABPN1Q86U42 306 aaKnown RBP eCLIP19.82■□□□□ 0.76
NOTCH4-203ENST00000473562 BAZ1AQ9NRL2 1556 aaPredicted RBP19.78■□□□□ 0.76
NOTCH4-203ENST00000473562 EIF4G1Q04637 1599 aaKnown RBP19.73■□□□□ 0.75
NOTCH4-203ENST00000473562 TNIKQ9UKE5 1360 aa19.68■□□□□ 0.74
NOTCH4-203ENST00000473562 WRNQ14191 1432 aaPredicted RBP eCLIP19.67■□□□□ 0.74
NOTCH4-203ENST00000473562 SMARCA2P51531 1590 aa19.61■□□□□ 0.73
NOTCH4-203ENST00000473562 TOP2AP11388 1531 aaKnown RBP19.59■□□□□ 0.73
NOTCH4-203ENST00000473562 APLP2Q06481 763 aa19.58■□□□□ 0.72
NOTCH4-203ENST00000473562 SMARCA4P51532 1647 aa19.53■□□□□ 0.72
NOTCH4-203ENST00000473562 ITGAEP38570 1179 aa19.52■□□□□ 0.71
NOTCH4-203ENST00000473562 GOLGA3Q08378 1498 aa19.51■□□□□ 0.71
NOTCH4-203ENST00000473562 CLIP1P30622 1438 aa19.49■□□□□ 0.71
NOTCH4-203ENST00000473562 RAPGEF2Q9Y4G8 1499 aa19.4■□□□□ 0.7
NOTCH4-203ENST00000473562 KANK4Q5T7N3 995 aaPredicted RBP19.38■□□□□ 0.69
NOTCH4-203ENST00000473562 SYNJ1O43426 1573 aa19.36■□□□□ 0.69
NOTCH4-203ENST00000473562 KCNH8Q96L42 1107 aa19.36■□□□□ 0.69
NOTCH4-203ENST00000473562 UNC13AQ9UPW8 1703 aa19.36■□□□□ 0.69
NOTCH4-203ENST00000473562 EEA1Q15075 1411 aa19.35■□□□□ 0.69
NOTCH4-203ENST00000473562 CEP164Q9UPV0 1460 aa19.31■□□□□ 0.68
NOTCH4-203ENST00000473562 VPS8Q8N3P4 1428 aa19.31■□□□□ 0.68
NOTCH4-203ENST00000473562 BCANQ96GW7 911 aa19.31■□□□□ 0.68
NOTCH4-203ENST00000473562 SUPT16HQ9Y5B9 1047 aaKnown RBP19.27■□□□□ 0.68
NOTCH4-203ENST00000473562 DHX57Q6P158 1386 aaKnown RBP19.22■□□□□ 0.67
NOTCH4-203ENST00000473562 HIRIP3Q9BW71 556 aaPredicted RBP19.22■□□□□ 0.67
NOTCH4-203ENST00000473562 KIF21BO75037 1637 aa19.19■□□□□ 0.66
NOTCH4-203ENST00000473562 BICRAQ9NZM4 1560 aa19.17■□□□□ 0.66
NOTCH4-203ENST00000473562 ATP1B4Q9UN42 357 aaPredicted RBP19.12■□□□□ 0.65
NOTCH4-203ENST00000473562 MYT1Q01538 1121 aa19.09■□□□□ 0.65
NOTCH4-203ENST00000473562 DDX10Q13206 875 aaKnown RBP19.08■□□□□ 0.65
NOTCH4-203ENST00000473562 SIN3AQ96ST3 1273 aa19.07■□□□□ 0.64
NOTCH4-203ENST00000473562 BAZ1BQ9UIG0 1483 aaKnown RBP19.07■□□□□ 0.64
NOTCH4-203ENST00000473562 TSHZ2Q9NRE2 1034 aa19.07■□□□□ 0.64
NOTCH4-203ENST00000473562 P3H3Q8IVL6 736 aa19.06■□□□□ 0.64
NOTCH4-203ENST00000473562 ARAP1Q96P48 1450 aa19.04■□□□□ 0.64
NOTCH4-203ENST00000473562 ATAD2BQ9ULI0 1458 aa19.04■□□□□ 0.64
NOTCH4-203ENST00000473562 FAM50AQ14320 339 aaKnown RBP19.01■□□□□ 0.63
NOTCH4-203ENST00000473562 TRIM52Q96A61 297 aa19■□□□□ 0.63
NOTCH4-203ENST00000473562 FKBP8Q14318 412 aa18.99■□□□□ 0.63
NOTCH4-203ENST00000473562 CCNB3Q8WWL7 1395 aa18.94■□□□□ 0.62
NOTCH4-203ENST00000473562 RAB3GAP2Q9H2M9 1393 aa18.93■□□□□ 0.62
NOTCH4-203ENST00000473562 CLSPNQ9HAW4 1339 aa18.88■□□□□ 0.61
NOTCH4-203ENST00000473562 PRXQ9BXM0 1461 aa18.86■□□□□ 0.61
NOTCH4-203ENST00000473562 TOP2BQ02880 1626 aa18.85■□□□□ 0.61
NOTCH4-203ENST00000473562 IRX6P78412 446 aaPredicted RBP18.83■□□□□ 0.6
NOTCH4-203ENST00000473562 ARHGAP35Q9NRY4 1499 aa18.82■□□□□ 0.6
NOTCH4-203ENST00000473562 PEG3Q9GZU2 1588 aa18.82■□□□□ 0.6
NOTCH4-203ENST00000473562 RRBP1Q9P2E9 1410 aaKnown RBP18.82■□□□□ 0.6
NOTCH4-203ENST00000473562 CUX1P39880 1505 aa18.79■□□□□ 0.6
NOTCH4-203ENST00000473562 KIF27Q86VH2 1401 aa18.78■□□□□ 0.6
NOTCH4-203ENST00000473562 WDR97A6NE52 1622 aa18.78■□□□□ 0.6
NOTCH4-203ENST00000473562 ANP32EQ9BTT0 268 aa18.77■□□□□ 0.6
NOTCH4-203ENST00000473562 PHLDB1Q86UU1 1377 aa18.76■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms