RNA–Protein interactions for RNA: ENST00000470258.5

NHLRC3-203, Transcript of NHL repeat containing 3, humanhuman

TSL 1 (best) BASIC

Gene NHLRC3, Length 3,298 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NHLRC3-203ENST00000470258 NISCHQ9Y2I1 1504 aa17.94■□□□□ 0.46
NHLRC3-203ENST00000470258 HRCP23327 699 aa16.12■□□□□ 0.17
NHLRC3-203ENST00000470258 CCDC180Q9P1Z9 1646 aa16.03■□□□□ 0.16
NHLRC3-203ENST00000470258 PPARGC1BQ86YN6 1023 aaKnown RBP15.94■□□□□ 0.14
NHLRC3-203ENST00000470258 PCGF6Q9BYE7 350 aa15.9■□□□□ 0.14
NHLRC3-203ENST00000470258 SUPT5HO00267 1087 aaKnown RBP15.9■□□□□ 0.14
NHLRC3-203ENST00000470258 SHROOM4Q9ULL8 1493 aa15.89■□□□□ 0.13
NHLRC3-203ENST00000470258 PELP1Q8IZL8 1130 aaKnown RBP15.67■□□□□ 0.1
NHLRC3-203ENST00000470258 MYO15BQ96JP2 1530 aa15.57■□□□□ 0.08
NHLRC3-203ENST00000470258 CHIC1Q5VXU3 224 aa15.48■□□□□ 0.07
NHLRC3-203ENST00000470258 SCAF1Q9H7N4 1312 aaKnown RBP15.36■□□□□ 0.05
NHLRC3-203ENST00000470258 ABCC9O60706 1549 aa15.34■□□□□ 0.05
NHLRC3-203ENST00000470258 LOC105371045A0A1W2PR82 267 aa15.27■□□□□ 0.03
NHLRC3-203ENST00000470258 TRIM26Q12899 539 aaPredicted RBP15.21■□□□□ 0.03
NHLRC3-203ENST00000470258 DCAF1Q9Y4B6 1507 aa15.16■□□□□ 0.02
NHLRC3-203ENST00000470258 ZEB1P37275 1124 aaPredicted RBP15.09■□□□□ 0.01
NHLRC3-203ENST00000470258 MYT1Q01538 1121 aa15.06■□□□□ 0
NHLRC3-203ENST00000470258 ZCCHC6Q5VYS8 1495 aaKnown RBP15.01□□□□□ -0.01
NHLRC3-203ENST00000470258 DCAF8L2P0C7V8 631 aa14.98□□□□□ -0.01
NHLRC3-203ENST00000470258 NACADO15069 1562 aa14.95□□□□□ -0.02
NHLRC3-203ENST00000470258 ACIN1Q9UKV3 1341 aaKnown RBP14.93□□□□□ -0.02
NHLRC3-203ENST00000470258 NEUROD1Q13562 356 aa14.93□□□□□ -0.02
NHLRC3-203ENST00000470258 RB1CC1Q8TDY2 1594 aa14.92□□□□□ -0.02
NHLRC3-203ENST00000470258 GTF3C3Q9Y5Q9 886 aa14.9□□□□□ -0.02
NHLRC3-203ENST00000470258 EHMT2Q96KQ7 1210 aa14.84□□□□□ -0.03
NHLRC3-203ENST00000470258 CENPBP07199 599 aaPredicted RBP14.79□□□□□ -0.04
NHLRC3-203ENST00000470258 FAM9AQ8IZU1 332 aaPredicted RBP14.77□□□□□ -0.05
NHLRC3-203ENST00000470258 UNC13AQ9UPW8 1703 aa14.73□□□□□ -0.05
NHLRC3-203ENST00000470258 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.7□□□□□ -0.06
NHLRC3-203ENST00000470258 CCER1Q8TC90 406 aaPredicted RBP14.68□□□□□ -0.06
NHLRC3-203ENST00000470258 DIEXFQ68CQ4 756 aaKnown RBP14.68□□□□□ -0.06
NHLRC3-203ENST00000470258 YTHDC1Q96MU7 727 aaKnown RBP14.63□□□□□ -0.07
NHLRC3-203ENST00000470258 TRIM41Q8WV44 630 aa14.6□□□□□ -0.07
NHLRC3-203ENST00000470258 BICRAQ9NZM4 1560 aa14.52□□□□□ -0.09
NHLRC3-203ENST00000470258 SCRIBQ14160 1630 aa14.51□□□□□ -0.09
NHLRC3-203ENST00000470258 TTBK1Q5TCY1 1321 aaPredicted RBP14.49□□□□□ -0.09
NHLRC3-203ENST00000470258 ZNF316A6NFI3 1004 aaPredicted RBP14.32□□□□□ -0.12
NHLRC3-203ENST00000470258 MIER1Q8N108 512 aa14.29□□□□□ -0.12
NHLRC3-203ENST00000470258 PABPN1Q86U42 306 aaKnown RBP eCLIP14.26□□□□□ -0.13
NHLRC3-203ENST00000470258 BCL11AQ9H165 835 aa14.23□□□□□ -0.13
NHLRC3-203ENST00000470258 ANP32EQ9BTT0 268 aa14.14□□□□□ -0.15
NHLRC3-203ENST00000470258 RSF1Q96T23 1441 aaPredicted RBP14.11□□□□□ -0.15
NHLRC3-203ENST00000470258 SUPT16HQ9Y5B9 1047 aaKnown RBP14.09□□□□□ -0.15
NHLRC3-203ENST00000470258 EIF4G1Q04637 1599 aaKnown RBP14.08□□□□□ -0.16
NHLRC3-203ENST00000470258 TSHZ2Q9NRE2 1034 aa14.05□□□□□ -0.16
NHLRC3-203ENST00000470258 HNRNPUL2Q1KMD3 747 aaKnown RBP14.04□□□□□ -0.16
NHLRC3-203ENST00000470258 CSRNP3Q8WYN3 585 aa14.04□□□□□ -0.16
NHLRC3-203ENST00000470258 CC2D2AQ9P2K1 1620 aa13.99□□□□□ -0.17
NHLRC3-203ENST00000470258 BCANQ96GW7 911 aa13.98□□□□□ -0.17
NHLRC3-203ENST00000470258 SMARCA4P51532 1647 aa13.94□□□□□ -0.18
NHLRC3-203ENST00000470258 DNAJC5BQ9UF47 199 aa13.93□□□□□ -0.18
NHLRC3-203ENST00000470258 CECR2Q9BXF3 1484 aa13.91□□□□□ -0.18
NHLRC3-203ENST00000470258 UBTFP17480 764 aaKnown RBP13.91□□□□□ -0.18
NHLRC3-203ENST00000470258 CLSPNQ9HAW4 1339 aa13.91□□□□□ -0.18
NHLRC3-203ENST00000470258 BAZ1AQ9NRL2 1556 aaPredicted RBP13.9□□□□□ -0.18
NHLRC3-203ENST00000470258 CEP162Q5TB80 1403 aa13.89□□□□□ -0.19
NHLRC3-203ENST00000470258 PEG3Q9GZU2 1588 aa13.85□□□□□ -0.19
NHLRC3-203ENST00000470258 WRNQ14191 1432 aaPredicted RBP eCLIP13.84□□□□□ -0.19
NHLRC3-203ENST00000470258 MROH2BQ7Z745 1585 aa13.81□□□□□ -0.2
NHLRC3-203ENST00000470258 FKBP8Q14318 412 aa13.79□□□□□ -0.2
NHLRC3-203ENST00000470258 SMARCA2P51531 1590 aa13.79□□□□□ -0.2
NHLRC3-203ENST00000470258 HMGXB3Q12766 1538 aa13.76□□□□□ -0.21
NHLRC3-203ENST00000470258 ATAD2BQ9ULI0 1458 aa13.76□□□□□ -0.21
NHLRC3-203ENST00000470258 NCAPD3P42695 1498 aa13.74□□□□□ -0.21
NHLRC3-203ENST00000470258 KCNH8Q96L42 1107 aa13.74□□□□□ -0.21
NHLRC3-203ENST00000470258 RANGAP1P46060 587 aaPredicted RBP13.74□□□□□ -0.21
NHLRC3-203ENST00000470258 RBM19Q9Y4C8 960 aaKnown RBP13.74□□□□□ -0.21
NHLRC3-203ENST00000470258 ITGAEP38570 1179 aa13.72□□□□□ -0.21
NHLRC3-203ENST00000470258 APLP2Q06481 763 aa13.72□□□□□ -0.21
NHLRC3-203ENST00000470258 TNIKQ9UKE5 1360 aa13.71□□□□□ -0.21
NHLRC3-203ENST00000470258 WIZO95785 1651 aa13.71□□□□□ -0.22
NHLRC3-203ENST00000470258 CCDC88BA6NC98 1476 aa13.69□□□□□ -0.22
NHLRC3-203ENST00000470258 NEFLP07196 543 aa13.69□□□□□ -0.22
NHLRC3-203ENST00000470258 SOGA1O94964 1423 aa13.69□□□□□ -0.22
NHLRC3-203ENST00000470258 ERICH6Q7L0X2 663 aa13.67□□□□□ -0.22
NHLRC3-203ENST00000470258 ABCC8Q09428 1581 aa13.67□□□□□ -0.22
NHLRC3-203ENST00000470258 PRKCSHP14314 528 aaPredicted RBP13.66□□□□□ -0.22
NHLRC3-203ENST00000470258 BAZ1BQ9UIG0 1483 aaKnown RBP13.64□□□□□ -0.23
NHLRC3-203ENST00000470258 RUSC2Q8N2Y8 1516 aa13.59□□□□□ -0.23
NHLRC3-203ENST00000470258 MSH5O43196 834 aa13.59□□□□□ -0.23
NHLRC3-203ENST00000470258 TOP2AP11388 1531 aaKnown RBP13.58□□□□□ -0.24
NHLRC3-203ENST00000470258 TRIM52Q96A61 297 aa13.57□□□□□ -0.24
NHLRC3-203ENST00000470258 DHX57Q6P158 1386 aaKnown RBP13.54□□□□□ -0.24
NHLRC3-203ENST00000470258 GOLGA3Q08378 1498 aa13.54□□□□□ -0.24
NHLRC3-203ENST00000470258 DDX10Q13206 875 aaKnown RBP13.54□□□□□ -0.24
NHLRC3-203ENST00000470258 CLIP1P30622 1438 aa13.51□□□□□ -0.25
NHLRC3-203ENST00000470258 IRX6P78412 446 aaPredicted RBP13.48□□□□□ -0.25
NHLRC3-203ENST00000470258 EEA1Q15075 1411 aa13.46□□□□□ -0.25
NHLRC3-203ENST00000470258 CDK11AQ9UQ88 783 aaPredicted RBP13.45□□□□□ -0.26
NHLRC3-203ENST00000470258 DEKP35659 375 aaKnown RBP13.45□□□□□ -0.26
NHLRC3-203ENST00000470258 HIRIP3Q9BW71 556 aaPredicted RBP13.44□□□□□ -0.26
NHLRC3-203ENST00000470258 VPS8Q8N3P4 1428 aa13.44□□□□□ -0.26
NHLRC3-203ENST00000470258 LAMC3Q9Y6N6 1575 aa13.42□□□□□ -0.26
NHLRC3-203ENST00000470258 PRDM2Q13029 1718 aa13.41□□□□□ -0.26
NHLRC3-203ENST00000470258 NBR1Q14596 966 aa13.39□□□□□ -0.27
NHLRC3-203ENST00000470258 FANCIQ9NVI1 1328 aa13.39□□□□□ -0.27
NHLRC3-203ENST00000470258 ANO8Q9HCE9 1232 aaPredicted RBP13.38□□□□□ -0.27
NHLRC3-203ENST00000470258 CEP164Q9UPV0 1460 aa13.37□□□□□ -0.27
NHLRC3-203ENST00000470258 ANP32CO43423 234 aa13.37□□□□□ -0.27
NHLRC3-203ENST00000470258 KANK4Q5T7N3 995 aaPredicted RBP13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms