RNA–Protein interactions for RNA: ENST00000462279.5

ERCC8-204, Transcript of ERCC excision repair 8, CSA ubiquitin ligase complex subunit, humanhuman

TSL 5

Gene ERCC8, Length 3,424 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC8-204ENST00000462279 NISCHQ9Y2I1 1504 aa15.18■□□□□ 0.02
ERCC8-204ENST00000462279 HRCP23327 699 aa13.64□□□□□ -0.23
ERCC8-204ENST00000462279 SHROOM4Q9ULL8 1493 aa13.52□□□□□ -0.24
ERCC8-204ENST00000462279 SUPT5HO00267 1087 aaKnown RBP13.52□□□□□ -0.24
ERCC8-204ENST00000462279 PPARGC1BQ86YN6 1023 aaKnown RBP13.49□□□□□ -0.25
ERCC8-204ENST00000462279 PCGF6Q9BYE7 350 aa13.48□□□□□ -0.25
ERCC8-204ENST00000462279 MYO15BQ96JP2 1530 aa13.21□□□□□ -0.29
ERCC8-204ENST00000462279 PELP1Q8IZL8 1130 aaKnown RBP13.17□□□□□ -0.3
ERCC8-204ENST00000462279 CHIC1Q5VXU3 224 aa13.16□□□□□ -0.3
ERCC8-204ENST00000462279 CCDC180Q9P1Z9 1646 aa13.12□□□□□ -0.31
ERCC8-204ENST00000462279 ZCCHC6Q5VYS8 1495 aaKnown RBP13□□□□□ -0.33
ERCC8-204ENST00000462279 LOC105371045A0A1W2PR82 267 aa12.98□□□□□ -0.33
ERCC8-204ENST00000462279 SCAF1Q9H7N4 1312 aaKnown RBP12.97□□□□□ -0.33
ERCC8-204ENST00000462279 TRIM26Q12899 539 aaPredicted RBP12.9□□□□□ -0.34
ERCC8-204ENST00000462279 DCAF1Q9Y4B6 1507 aa12.84□□□□□ -0.35
ERCC8-204ENST00000462279 DCAF8L2P0C7V8 631 aa12.8□□□□□ -0.36
ERCC8-204ENST00000462279 ZEB1P37275 1124 aaPredicted RBP12.77□□□□□ -0.37
ERCC8-204ENST00000462279 MYT1Q01538 1121 aa12.64□□□□□ -0.39
ERCC8-204ENST00000462279 NEUROD1Q13562 356 aa12.63□□□□□ -0.39
ERCC8-204ENST00000462279 EHMT2Q96KQ7 1210 aa12.62□□□□□ -0.39
ERCC8-204ENST00000462279 ACIN1Q9UKV3 1341 aaKnown RBP12.62□□□□□ -0.39
ERCC8-204ENST00000462279 GTF3C3Q9Y5Q9 886 aa12.59□□□□□ -0.39
ERCC8-204ENST00000462279 FAM9AQ8IZU1 332 aaPredicted RBP12.56□□□□□ -0.4
ERCC8-204ENST00000462279 CENPBP07199 599 aaPredicted RBP12.5□□□□□ -0.41
ERCC8-204ENST00000462279 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.47□□□□□ -0.41
ERCC8-204ENST00000462279 CCER1Q8TC90 406 aaPredicted RBP12.44□□□□□ -0.42
ERCC8-204ENST00000462279 DIEXFQ68CQ4 756 aaKnown RBP12.43□□□□□ -0.42
ERCC8-204ENST00000462279 TRIM41Q8WV44 630 aa12.42□□□□□ -0.42
ERCC8-204ENST00000462279 ABCC9O60706 1549 aa12.4□□□□□ -0.42
ERCC8-204ENST00000462279 YTHDC1Q96MU7 727 aaKnown RBP12.38□□□□□ -0.43
ERCC8-204ENST00000462279 TTBK1Q5TCY1 1321 aaPredicted RBP12.32□□□□□ -0.44
ERCC8-204ENST00000462279 DNAJC5Q9H3Z4 198 aa12.17□□□□□ -0.46
ERCC8-204ENST00000462279 EIF4G1Q04637 1599 aaKnown RBP12.17□□□□□ -0.46
ERCC8-204ENST00000462279 ZNF316A6NFI3 1004 aaPredicted RBP12.13□□□□□ -0.47
ERCC8-204ENST00000462279 MIER1Q8N108 512 aa12.11□□□□□ -0.47
ERCC8-204ENST00000462279 RB1CC1Q8TDY2 1594 aa12.05□□□□□ -0.48
ERCC8-204ENST00000462279 RSF1Q96T23 1441 aaPredicted RBP12.03□□□□□ -0.48
ERCC8-204ENST00000462279 BCL11AQ9H165 835 aa11.96□□□□□ -0.5
ERCC8-204ENST00000462279 HNRNPUL2Q1KMD3 747 aaKnown RBP11.93□□□□□ -0.5
ERCC8-204ENST00000462279 ANP32EQ9BTT0 268 aa11.91□□□□□ -0.5
ERCC8-204ENST00000462279 SUPT16HQ9Y5B9 1047 aaKnown RBP11.91□□□□□ -0.5
ERCC8-204ENST00000462279 SCRIBQ14160 1630 aa11.9□□□□□ -0.5
ERCC8-204ENST00000462279 TSHZ2Q9NRE2 1034 aa11.87□□□□□ -0.51
ERCC8-204ENST00000462279 NACADO15069 1562 aa11.87□□□□□ -0.51
ERCC8-204ENST00000462279 BAZ1AQ9NRL2 1556 aaPredicted RBP11.87□□□□□ -0.51
ERCC8-204ENST00000462279 CSRNP3Q8WYN3 585 aa11.84□□□□□ -0.51
ERCC8-204ENST00000462279 UBTFP17480 764 aaKnown RBP11.84□□□□□ -0.51
ERCC8-204ENST00000462279 BCANQ96GW7 911 aa11.82□□□□□ -0.52
ERCC8-204ENST00000462279 UNC13AQ9UPW8 1703 aa11.81□□□□□ -0.52
ERCC8-204ENST00000462279 WIZO95785 1651 aa11.81□□□□□ -0.52
ERCC8-204ENST00000462279 CEP162Q5TB80 1403 aa11.8□□□□□ -0.52
ERCC8-204ENST00000462279 MROH2BQ7Z745 1585 aa11.77□□□□□ -0.52
ERCC8-204ENST00000462279 WRNQ14191 1432 aaPredicted RBP eCLIP11.75□□□□□ -0.53
ERCC8-204ENST00000462279 CLSPNQ9HAW4 1339 aa11.74□□□□□ -0.53
ERCC8-204ENST00000462279 CECR2Q9BXF3 1484 aa11.71□□□□□ -0.53
ERCC8-204ENST00000462279 RANGAP1P46060 587 aaPredicted RBP11.7□□□□□ -0.54
ERCC8-204ENST00000462279 FKBP8Q14318 412 aa11.67□□□□□ -0.54
ERCC8-204ENST00000462279 CCDC88BA6NC98 1476 aa11.66□□□□□ -0.54
ERCC8-204ENST00000462279 SOGA1O94964 1423 aa11.66□□□□□ -0.54
ERCC8-204ENST00000462279 TNIKQ9UKE5 1360 aa11.66□□□□□ -0.54
ERCC8-204ENST00000462279 APLP2Q06481 763 aa11.66□□□□□ -0.54
ERCC8-204ENST00000462279 KCNH8Q96L42 1107 aa11.66□□□□□ -0.54
ERCC8-204ENST00000462279 ABCC8Q09428 1581 aa11.65□□□□□ -0.54
ERCC8-204ENST00000462279 TOP2AP11388 1531 aaKnown RBP11.63□□□□□ -0.55
ERCC8-204ENST00000462279 SMARCA2P51531 1590 aa11.62□□□□□ -0.55
ERCC8-204ENST00000462279 ITGAEP38570 1179 aa11.61□□□□□ -0.55
ERCC8-204ENST00000462279 RBM19Q9Y4C8 960 aaKnown RBP11.61□□□□□ -0.55
ERCC8-204ENST00000462279 SMARCA4P51532 1647 aa11.6□□□□□ -0.55
ERCC8-204ENST00000462279 RUSC2Q8N2Y8 1516 aa11.58□□□□□ -0.56
ERCC8-204ENST00000462279 PEG3Q9GZU2 1588 aa11.58□□□□□ -0.56
ERCC8-204ENST00000462279 NEFLP07196 543 aa11.57□□□□□ -0.56
ERCC8-204ENST00000462279 ERICH6Q7L0X2 663 aa11.53□□□□□ -0.56
ERCC8-204ENST00000462279 GOLGA3Q08378 1498 aa11.51□□□□□ -0.57
ERCC8-204ENST00000462279 TRIM52Q96A61 297 aa11.51□□□□□ -0.57
ERCC8-204ENST00000462279 DHX57Q6P158 1386 aaKnown RBP11.5□□□□□ -0.57
ERCC8-204ENST00000462279 DDX10Q13206 875 aaKnown RBP11.49□□□□□ -0.57
ERCC8-204ENST00000462279 CLIP1P30622 1438 aa11.49□□□□□ -0.57
ERCC8-204ENST00000462279 MSH5O43196 834 aa11.48□□□□□ -0.57
ERCC8-204ENST00000462279 DNAJC5BQ9UF47 199 aa11.47□□□□□ -0.57
ERCC8-204ENST00000462279 KIF21BO75037 1637 aa11.46□□□□□ -0.57
ERCC8-204ENST00000462279 EEA1Q15075 1411 aa11.45□□□□□ -0.58
ERCC8-204ENST00000462279 PRKCSHP14314 528 aaPredicted RBP11.45□□□□□ -0.58
ERCC8-204ENST00000462279 BICRAQ9NZM4 1560 aa11.43□□□□□ -0.58
ERCC8-204ENST00000462279 VPS8Q8N3P4 1428 aa11.43□□□□□ -0.58
ERCC8-204ENST00000462279 HIRIP3Q9BW71 556 aaPredicted RBP11.42□□□□□ -0.58
ERCC8-204ENST00000462279 IRX6P78412 446 aaPredicted RBP11.42□□□□□ -0.58
ERCC8-204ENST00000462279 CUX2O14529 1486 aa11.38□□□□□ -0.59
ERCC8-204ENST00000462279 CEP164Q9UPV0 1460 aa11.38□□□□□ -0.59
ERCC8-204ENST00000462279 CDK11AQ9UQ88 783 aaPredicted RBP11.37□□□□□ -0.59
ERCC8-204ENST00000462279 KANK4Q5T7N3 995 aaPredicted RBP11.37□□□□□ -0.59
ERCC8-204ENST00000462279 SYNJ1O43426 1573 aa11.35□□□□□ -0.59
ERCC8-204ENST00000462279 BIVM-ERCC5R4GMW8 1640 aa11.34□□□□□ -0.59
ERCC8-204ENST00000462279 DEKP35659 375 aaKnown RBP11.34□□□□□ -0.59
ERCC8-204ENST00000462279 ANP32CO43423 234 aa11.33□□□□□ -0.6
ERCC8-204ENST00000462279 SIN3AQ96ST3 1273 aa11.31□□□□□ -0.6
ERCC8-204ENST00000462279 RAPGEF2Q9Y4G8 1499 aa11.31□□□□□ -0.6
ERCC8-204ENST00000462279 NBR1Q14596 966 aa11.31□□□□□ -0.6
ERCC8-204ENST00000462279 FANCIQ9NVI1 1328 aa11.31□□□□□ -0.6
ERCC8-204ENST00000462279 HNRNPUQ00839 825 aaKnown RBP eCLIP11.28□□□□□ -0.6
ERCC8-204ENST00000462279 PRDM2Q13029 1718 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms