RNA–Protein interactions for RNA: ENST00000461004.1

RTN4-212, Transcript of reticulon 4, humanhuman

TSL 3

Gene RTN4, Length 422 nt, Biotype processed transcript, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-212ENST00000461004 AEBP2Q6ZN18 517 aaPredicted RBP22.33■■□□□ 1.17
RTN4-212ENST00000461004 CHIC1Q5VXU3 224 aa21.89■■□□□ 1.09
RTN4-212ENST00000461004 PHF23Q9BUL5 403 aaPredicted RBP19.36■□□□□ 0.69
RTN4-212ENST00000461004 SENP3Q9H4L4 574 aaPredicted RBP18.76■□□□□ 0.59
RTN4-212ENST00000461004 PLPPR3Q6T4P5 718 aa17.79■□□□□ 0.44
RTN4-212ENST00000461004 NISCHQ9Y2I1 1504 aa17.54■□□□□ 0.4
RTN4-212ENST00000461004 FOXD1Q16676 465 aa17.49■□□□□ 0.39
RTN4-212ENST00000461004 PPP6R1Q9UPN7 881 aa17.04■□□□□ 0.32
RTN4-212ENST00000461004 ADRA2BP18089 450 aa16.99■□□□□ 0.31
RTN4-212ENST00000461004 PIAS4Q8N2W9 510 aaPredicted RBP16.47■□□□□ 0.23
RTN4-212ENST00000461004 MSH5O43196 834 aa15.92■□□□□ 0.14
RTN4-212ENST00000461004 PPP4R3CPQ6ZMV5 832 aa15.75■□□□□ 0.11
RTN4-212ENST00000461004 KCNA4P22459 653 aa15.65■□□□□ 0.1
RTN4-212ENST00000461004 CCDC180Q9P1Z9 1646 aa15.45■□□□□ 0.06
RTN4-212ENST00000461004 MAPK8IP2Q13387 824 aaPredicted RBP15.4■□□□□ 0.06
RTN4-212ENST00000461004 SCAF1Q9H7N4 1312 aaKnown RBP15.36■□□□□ 0.05
RTN4-212ENST00000461004 NCBP3Q53F19 620 aaKnown RBP15.28■□□□□ 0.04
RTN4-212ENST00000461004 CNKSR2Q8WXI2 1034 aa15.22■□□□□ 0.03
RTN4-212ENST00000461004 NPM3O75607 178 aaKnown RBP15.2■□□□□ 0.02
RTN4-212ENST00000461004 ABCC9O60706 1549 aa15.2■□□□□ 0.02
RTN4-212ENST00000461004 DMRT2Q9Y5R5 561 aa15.05■□□□□ -0
RTN4-212ENST00000461004 RNF216Q9NWF9 866 aaPredicted RBP14.89□□□□□ -0.03
RTN4-212ENST00000461004 SLC4A1APQ9BWU0 796 aaKnown RBP14.86□□□□□ -0.03
RTN4-212ENST00000461004 HOXD11P31277 338 aaPredicted RBP14.81□□□□□ -0.04
RTN4-212ENST00000461004 DCAF8L2P0C7V8 631 aa14.73□□□□□ -0.05
RTN4-212ENST00000461004 EHMT2Q96KQ7 1210 aa14.7□□□□□ -0.06
RTN4-212ENST00000461004 DNAJC5BQ9UF47 199 aa14.68□□□□□ -0.06
RTN4-212ENST00000461004 ZCCHC6Q5VYS8 1495 aaKnown RBP14.61□□□□□ -0.07
RTN4-212ENST00000461004 NACADO15069 1562 aa14.55□□□□□ -0.08
RTN4-212ENST00000461004 RB1CC1Q8TDY2 1594 aa14.54□□□□□ -0.08
RTN4-212ENST00000461004 ZBTB22O15209 634 aa14.48□□□□□ -0.09
RTN4-212ENST00000461004 CSRNP3Q8WYN3 585 aa14.48□□□□□ -0.09
RTN4-212ENST00000461004 MYO15BQ96JP2 1530 aa14.46□□□□□ -0.1
RTN4-212ENST00000461004 DCAF1Q9Y4B6 1507 aa14.44□□□□□ -0.1
RTN4-212ENST00000461004 SLC4A2P04920 1241 aa14.35□□□□□ -0.11
RTN4-212ENST00000461004 DCAF8L1A6NGE4 600 aa14.34□□□□□ -0.11
RTN4-212ENST00000461004 PABPN1Q86U42 306 aaKnown RBP eCLIP14.29□□□□□ -0.12
RTN4-212ENST00000461004 POTEDQ86YR6 584 aa14.29□□□□□ -0.12
RTN4-212ENST00000461004 FOXD4L1Q9NU39 408 aa14.27□□□□□ -0.13
RTN4-212ENST00000461004 UNC13AQ9UPW8 1703 aa14.24□□□□□ -0.13
RTN4-212ENST00000461004 SCRIBQ14160 1630 aa14.22□□□□□ -0.13
RTN4-212ENST00000461004 BICRAQ9NZM4 1560 aa14.18□□□□□ -0.14
RTN4-212ENST00000461004 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.06□□□□□ -0.16
RTN4-212ENST00000461004 SHROOM4Q9ULL8 1493 aa14.02□□□□□ -0.16
RTN4-212ENST00000461004 MYCNP04198 464 aaPredicted RBP13.96□□□□□ -0.17
RTN4-212ENST00000461004 U3KPZ7 1027 aaPredicted RBP13.94□□□□□ -0.18
RTN4-212ENST00000461004 EIF4G1Q04637 1599 aaKnown RBP13.76□□□□□ -0.21
RTN4-212ENST00000461004 RNF39Q9H2S5 420 aa13.75□□□□□ -0.21
RTN4-212ENST00000461004 CECR2Q9BXF3 1484 aa13.74□□□□□ -0.21
RTN4-212ENST00000461004 ATF5Q9Y2D1 282 aaPredicted RBP13.73□□□□□ -0.21
RTN4-212ENST00000461004 ATXN8OSP0DMR3 200 aa13.72□□□□□ -0.21
RTN4-212ENST00000461004 CC2D2AQ9P2K1 1620 aa13.7□□□□□ -0.22
RTN4-212ENST00000461004 SAMD1Q6SPF0 538 aaPredicted RBP13.67□□□□□ -0.22
RTN4-212ENST00000461004 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.66□□□□□ -0.22
RTN4-212ENST00000461004 HNRNPUL2Q1KMD3 747 aaKnown RBP13.66□□□□□ -0.22
RTN4-212ENST00000461004 MROH2BQ7Z745 1585 aa13.57□□□□□ -0.24
RTN4-212ENST00000461004 SMARCA4P51532 1647 aa13.57□□□□□ -0.24
RTN4-212ENST00000461004 BAZ1AQ9NRL2 1556 aaPredicted RBP13.54□□□□□ -0.24
RTN4-212ENST00000461004 C1QBPQ07021 282 aaKnown RBP13.52□□□□□ -0.25
RTN4-212ENST00000461004 SPINK5Q9NQ38 1064 aaPredicted RBP13.52□□□□□ -0.25
RTN4-212ENST00000461004 ATAD2BQ9ULI0 1458 aa13.5□□□□□ -0.25
RTN4-212ENST00000461004 NCAPD3P42695 1498 aa13.47□□□□□ -0.25
RTN4-212ENST00000461004 RSF1Q96T23 1441 aaPredicted RBP13.44□□□□□ -0.26
RTN4-212ENST00000461004 SMARCA2P51531 1590 aa13.43□□□□□ -0.26
RTN4-212ENST00000461004 APLP2Q06481 763 aa13.43□□□□□ -0.26
RTN4-212ENST00000461004 WIZO95785 1651 aa13.4□□□□□ -0.26
RTN4-212ENST00000461004 PEG3Q9GZU2 1588 aa13.4□□□□□ -0.26
RTN4-212ENST00000461004 ZNF219Q9P2Y4 722 aaPredicted RBP13.39□□□□□ -0.27
RTN4-212ENST00000461004 BAZ1BQ9UIG0 1483 aaKnown RBP13.37□□□□□ -0.27
RTN4-212ENST00000461004 TRHP20396 242 aaPredicted RBP13.37□□□□□ -0.27
RTN4-212ENST00000461004 CAPN15O75808 1086 aa13.36□□□□□ -0.27
RTN4-212ENST00000461004 HMGXB3Q12766 1538 aa13.35□□□□□ -0.27
RTN4-212ENST00000461004 SUPT5HO00267 1087 aaKnown RBP13.23□□□□□ -0.29
RTN4-212ENST00000461004 TOP2AP11388 1531 aaKnown RBP13.22□□□□□ -0.29
RTN4-212ENST00000461004 POLA2Q14181 598 aa13.21□□□□□ -0.29
RTN4-212ENST00000461004 CACNB1Q02641 598 aaPredicted RBP13.2□□□□□ -0.3
RTN4-212ENST00000461004 NESP48681 1621 aa13.2□□□□□ -0.3
RTN4-212ENST00000461004 ABCB7O75027 752 aa13.19□□□□□ -0.3
RTN4-212ENST00000461004 DSG3P32926 999 aa13.15□□□□□ -0.3
RTN4-212ENST00000461004 CCDC88BA6NC98 1476 aa13.12□□□□□ -0.31
RTN4-212ENST00000461004 MKRN4PQ13434 485 aaPredicted RBP13.12□□□□□ -0.31
RTN4-212ENST00000461004 CADPSQ9ULU8 1353 aa13.1□□□□□ -0.31
RTN4-212ENST00000461004 LAMC3Q9Y6N6 1575 aa13.04□□□□□ -0.32
RTN4-212ENST00000461004 ERCC6Q03468 1493 aa13.04□□□□□ -0.32
RTN4-212ENST00000461004 CFTRP13569 1480 aa13.03□□□□□ -0.32
RTN4-212ENST00000461004 FKBP8Q14318 412 aa13.02□□□□□ -0.33
RTN4-212ENST00000461004 PDS5BQ9NTI5 1447 aa12.98□□□□□ -0.33
RTN4-212ENST00000461004 KIF21AQ7Z4S6 1674 aa12.96□□□□□ -0.33
RTN4-212ENST00000461004 FANCD2Q9BXW9 1451 aa12.94□□□□□ -0.34
RTN4-212ENST00000461004 FBLN2P98095 1184 aa12.94□□□□□ -0.34
RTN4-212ENST00000461004 ZBTB12Q9Y330 459 aaPredicted RBP12.89□□□□□ -0.35
RTN4-212ENST00000461004 CEP164Q9UPV0 1460 aa12.89□□□□□ -0.35
RTN4-212ENST00000461004 THOC2Q8NI27 1593 aaKnown RBP12.89□□□□□ -0.35
RTN4-212ENST00000461004 MRC2Q9UBG0 1479 aa12.86□□□□□ -0.35
RTN4-212ENST00000461004 URB2Q14146 1524 aaKnown RBP12.83□□□□□ -0.35
RTN4-212ENST00000461004 PRDM2Q13029 1718 aa12.83□□□□□ -0.36
RTN4-212ENST00000461004 CUX2O14529 1486 aa12.83□□□□□ -0.36
RTN4-212ENST00000461004 SPDYE4A6NLX3 237 aa12.81□□□□□ -0.36
RTN4-212ENST00000461004 WDR62O43379 1518 aa12.8□□□□□ -0.36
RTN4-212ENST00000461004 OSCARQ8IYS5 282 aa12.77□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms