RNA–Protein interactions for RNA: ENST00000456522.1

PTCHD1-202, Transcript of patched domain containing 1, humanhuman

TSL 1 (best)

Gene PTCHD1, Length 736 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1-202ENST00000456522 AEBP2Q6ZN18 517 aaPredicted RBP26.65■■□□□ 1.86
PTCHD1-202ENST00000456522 CHIC1Q5VXU3 224 aa26.64■■□□□ 1.86
PTCHD1-202ENST00000456522 PHF23Q9BUL5 403 aaPredicted RBP23.48■■□□□ 1.35
PTCHD1-202ENST00000456522 SENP3Q9H4L4 574 aaPredicted RBP22.52■■□□□ 1.2
PTCHD1-202ENST00000456522 NISCHQ9Y2I1 1504 aa21.96■■□□□ 1.11
PTCHD1-202ENST00000456522 PLPPR3Q6T4P5 718 aa21.88■■□□□ 1.09
PTCHD1-202ENST00000456522 FOXD1Q16676 465 aa20.8■□□□□ 0.92
PTCHD1-202ENST00000456522 PPP6R1Q9UPN7 881 aa20.48■□□□□ 0.87
PTCHD1-202ENST00000456522 ADRA2BP18089 450 aa20.44■□□□□ 0.86
PTCHD1-202ENST00000456522 PIAS4Q8N2W9 510 aaPredicted RBP19.7■□□□□ 0.74
PTCHD1-202ENST00000456522 KCNA4P22459 653 aa19.55■□□□□ 0.72
PTCHD1-202ENST00000456522 CCDC180Q9P1Z9 1646 aa19.34■□□□□ 0.69
PTCHD1-202ENST00000456522 PPP4R3CPQ6ZMV5 832 aa19.32■□□□□ 0.68
PTCHD1-202ENST00000456522 NCBP3Q53F19 620 aaKnown RBP18.99■□□□□ 0.63
PTCHD1-202ENST00000456522 MSH5O43196 834 aa18.97■□□□□ 0.63
PTCHD1-202ENST00000456522 EHMT2Q96KQ7 1210 aa18.77■□□□□ 0.6
PTCHD1-202ENST00000456522 NPM3O75607 178 aaKnown RBP18.75■□□□□ 0.59
PTCHD1-202ENST00000456522 SCAF1Q9H7N4 1312 aaKnown RBP18.74■□□□□ 0.59
PTCHD1-202ENST00000456522 SLC4A1APQ9BWU0 796 aaKnown RBP18.71■□□□□ 0.59
PTCHD1-202ENST00000456522 CNKSR2Q8WXI2 1034 aa18.69■□□□□ 0.58
PTCHD1-202ENST00000456522 ABCC9O60706 1549 aa18.64■□□□□ 0.58
PTCHD1-202ENST00000456522 CSRNP3Q8WYN3 585 aa18.43■□□□□ 0.54
PTCHD1-202ENST00000456522 ZCCHC6Q5VYS8 1495 aaKnown RBP18.36■□□□□ 0.53
PTCHD1-202ENST00000456522 DNAJC5BQ9UF47 199 aa18.36■□□□□ 0.53
PTCHD1-202ENST00000456522 MAPK8IP2Q13387 824 aaPredicted RBP18.35■□□□□ 0.53
PTCHD1-202ENST00000456522 DCAF8L2P0C7V8 631 aa18.33■□□□□ 0.52
PTCHD1-202ENST00000456522 RNF216Q9NWF9 866 aaPredicted RBP18.2■□□□□ 0.5
PTCHD1-202ENST00000456522 DCAF1Q9Y4B6 1507 aa18.13■□□□□ 0.49
PTCHD1-202ENST00000456522 DMRT2Q9Y5R5 561 aa18.11■□□□□ 0.49
PTCHD1-202ENST00000456522 NACADO15069 1562 aa18.09■□□□□ 0.49
PTCHD1-202ENST00000456522 MYO15BQ96JP2 1530 aa18.05■□□□□ 0.48
PTCHD1-202ENST00000456522 RB1CC1Q8TDY2 1594 aa18.04■□□□□ 0.48
PTCHD1-202ENST00000456522 ZBTB22O15209 634 aa18.04■□□□□ 0.48
PTCHD1-202ENST00000456522 HOXD11P31277 338 aaPredicted RBP18■□□□□ 0.47
PTCHD1-202ENST00000456522 FOXD4L1Q9NU39 408 aa17.86■□□□□ 0.45
PTCHD1-202ENST00000456522 SCRIBQ14160 1630 aa17.76■□□□□ 0.43
PTCHD1-202ENST00000456522 SHROOM4Q9ULL8 1493 aa17.69■□□□□ 0.42
PTCHD1-202ENST00000456522 UNC13AQ9UPW8 1703 aa17.69■□□□□ 0.42
PTCHD1-202ENST00000456522 SLC4A2P04920 1241 aa17.57■□□□□ 0.4
PTCHD1-202ENST00000456522 PABPN1Q86U42 306 aaKnown RBP eCLIP17.52■□□□□ 0.4
PTCHD1-202ENST00000456522 BICRAQ9NZM4 1560 aa17.49■□□□□ 0.39
PTCHD1-202ENST00000456522 MYCNP04198 464 aaPredicted RBP17.31■□□□□ 0.36
PTCHD1-202ENST00000456522 ATXN8OSP0DMR3 200 aa17.27■□□□□ 0.36
PTCHD1-202ENST00000456522 CECR2Q9BXF3 1484 aa17.1■□□□□ 0.33
PTCHD1-202ENST00000456522 DCAF8L1A6NGE4 600 aa17.03■□□□□ 0.32
PTCHD1-202ENST00000456522 EIF4G1Q04637 1599 aaKnown RBP17■□□□□ 0.31
PTCHD1-202ENST00000456522 BAZ1AQ9NRL2 1556 aaPredicted RBP16.99■□□□□ 0.31
PTCHD1-202ENST00000456522 SMARCA4P51532 1647 aa16.98■□□□□ 0.31
PTCHD1-202ENST00000456522 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.97■□□□□ 0.31
PTCHD1-202ENST00000456522 MROH2BQ7Z745 1585 aa16.96■□□□□ 0.31
PTCHD1-202ENST00000456522 U3KPZ7 1027 aaPredicted RBP16.89■□□□□ 0.29
PTCHD1-202ENST00000456522 RSF1Q96T23 1441 aaPredicted RBP16.88■□□□□ 0.29
PTCHD1-202ENST00000456522 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.88■□□□□ 0.29
PTCHD1-202ENST00000456522 HNRNPUL2Q1KMD3 747 aaKnown RBP16.88■□□□□ 0.29
PTCHD1-202ENST00000456522 CC2D2AQ9P2K1 1620 aa16.86■□□□□ 0.29
PTCHD1-202ENST00000456522 SUPT5HO00267 1087 aaKnown RBP16.84■□□□□ 0.29
PTCHD1-202ENST00000456522 SAMD1Q6SPF0 538 aaPredicted RBP16.84■□□□□ 0.29
PTCHD1-202ENST00000456522 WIZO95785 1651 aa16.82■□□□□ 0.28
PTCHD1-202ENST00000456522 ATAD2BQ9ULI0 1458 aa16.78■□□□□ 0.28
PTCHD1-202ENST00000456522 SMARCA2P51531 1590 aa16.77■□□□□ 0.28
PTCHD1-202ENST00000456522 ATF5Q9Y2D1 282 aaPredicted RBP16.77■□□□□ 0.28
PTCHD1-202ENST00000456522 PEG3Q9GZU2 1588 aa16.75■□□□□ 0.27
PTCHD1-202ENST00000456522 NCAPD3P42695 1498 aa16.68■□□□□ 0.26
PTCHD1-202ENST00000456522 BAZ1BQ9UIG0 1483 aaKnown RBP16.67■□□□□ 0.26
PTCHD1-202ENST00000456522 HMGXB3Q12766 1538 aa16.64■□□□□ 0.25
PTCHD1-202ENST00000456522 TOP2AP11388 1531 aaKnown RBP16.62■□□□□ 0.25
PTCHD1-202ENST00000456522 POTEDQ86YR6 584 aa16.6■□□□□ 0.25
PTCHD1-202ENST00000456522 APLP2Q06481 763 aa16.55■□□□□ 0.24
PTCHD1-202ENST00000456522 FKBP8Q14318 412 aa16.53■□□□□ 0.24
PTCHD1-202ENST00000456522 CCDC88BA6NC98 1476 aa16.44■□□□□ 0.22
PTCHD1-202ENST00000456522 ZNF219Q9P2Y4 722 aaPredicted RBP16.44■□□□□ 0.22
PTCHD1-202ENST00000456522 RNF39Q9H2S5 420 aa16.33■□□□□ 0.2
PTCHD1-202ENST00000456522 CADPSQ9ULU8 1353 aa16.25■□□□□ 0.19
PTCHD1-202ENST00000456522 NESP48681 1621 aa16.24■□□□□ 0.19
PTCHD1-202ENST00000456522 AMER1Q5JTC6 1135 aaPredicted RBP16.21■□□□□ 0.19
PTCHD1-202ENST00000456522 CFTRP13569 1480 aa16.21■□□□□ 0.19
PTCHD1-202ENST00000456522 LAMC3Q9Y6N6 1575 aa16.2■□□□□ 0.18
PTCHD1-202ENST00000456522 C1QBPQ07021 282 aaKnown RBP16.17■□□□□ 0.18
PTCHD1-202ENST00000456522 SPINK5Q9NQ38 1064 aaPredicted RBP16.17■□□□□ 0.18
PTCHD1-202ENST00000456522 PRDM2Q13029 1718 aa16.16■□□□□ 0.18
PTCHD1-202ENST00000456522 RTN4Q9NQC3 1192 aaKnown RBP16.14■□□□□ 0.17
PTCHD1-202ENST00000456522 MKRN4PQ13434 485 aaPredicted RBP16.11■□□□□ 0.17
PTCHD1-202ENST00000456522 PDS5BQ9NTI5 1447 aa16.1■□□□□ 0.17
PTCHD1-202ENST00000456522 FANCD2Q9BXW9 1451 aa16.08■□□□□ 0.16
PTCHD1-202ENST00000456522 KIF21AQ7Z4S6 1674 aa16.07■□□□□ 0.16
PTCHD1-202ENST00000456522 TRHP20396 242 aaPredicted RBP16.06■□□□□ 0.16
PTCHD1-202ENST00000456522 ERCC6Q03468 1493 aa16.03■□□□□ 0.16
PTCHD1-202ENST00000456522 CEP164Q9UPV0 1460 aa16.02■□□□□ 0.15
PTCHD1-202ENST00000456522 CAPN15O75808 1086 aa16■□□□□ 0.15
PTCHD1-202ENST00000456522 POLA2Q14181 598 aa16■□□□□ 0.15
PTCHD1-202ENST00000456522 FBLN2P98095 1184 aa15.99■□□□□ 0.15
PTCHD1-202ENST00000456522 PROM2Q8N271 834 aa15.99■□□□□ 0.15
PTCHD1-202ENST00000456522 ABCC8Q09428 1581 aa15.99■□□□□ 0.15
PTCHD1-202ENST00000456522 SPDYE4A6NLX3 237 aa15.98■□□□□ 0.15
PTCHD1-202ENST00000456522 WRNQ14191 1432 aaPredicted RBP eCLIP15.92■□□□□ 0.14
PTCHD1-202ENST00000456522 MRC2Q9UBG0 1479 aa15.91■□□□□ 0.14
PTCHD1-202ENST00000456522 URB2Q14146 1524 aaKnown RBP15.89■□□□□ 0.13
PTCHD1-202ENST00000456522 CUX1P39880 1505 aa15.89■□□□□ 0.13
PTCHD1-202ENST00000456522 SYNJ1O43426 1573 aa15.87■□□□□ 0.13
PTCHD1-202ENST00000456522 THOC2Q8NI27 1593 aaKnown RBP15.87■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 72.1 ms