RNA–Protein interactions for RNA: ENST00000455546.6

GTF3C3-208, Transcript of general transcription factor IIIC subunit 3, humanhuman

TSL 4

Gene GTF3C3, Length 547 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3C3-208ENST00000455546 AEBP2Q6ZN18 517 aaPredicted RBP14.41□□□□□ -0.1
GTF3C3-208ENST00000455546 CHIC1Q5VXU3 224 aa14.25□□□□□ -0.13
GTF3C3-208ENST00000455546 PHF23Q9BUL5 403 aaPredicted RBP12.61□□□□□ -0.39
GTF3C3-208ENST00000455546 SENP3Q9H4L4 574 aaPredicted RBP12.1□□□□□ -0.47
GTF3C3-208ENST00000455546 PLPPR3Q6T4P5 718 aa11.66□□□□□ -0.54
GTF3C3-208ENST00000455546 NISCHQ9Y2I1 1504 aa11.61□□□□□ -0.55
GTF3C3-208ENST00000455546 FOXD1Q16676 465 aa11.27□□□□□ -0.61
GTF3C3-208ENST00000455546 ADRA2BP18089 450 aa11.09□□□□□ -0.63
GTF3C3-208ENST00000455546 PPP6R1Q9UPN7 881 aa11.06□□□□□ -0.64
GTF3C3-208ENST00000455546 PIAS4Q8N2W9 510 aaPredicted RBP10.7□□□□□ -0.7
GTF3C3-208ENST00000455546 ABCC9O60706 1549 aa10.47□□□□□ -0.73
GTF3C3-208ENST00000455546 KCNA4P22459 653 aa10.45□□□□□ -0.74
GTF3C3-208ENST00000455546 PPP4R3CPQ6ZMV5 832 aa10.36□□□□□ -0.75
GTF3C3-208ENST00000455546 CCDC180Q9P1Z9 1646 aa10.36□□□□□ -0.75
GTF3C3-208ENST00000455546 MSH5O43196 834 aa10.21□□□□□ -0.77
GTF3C3-208ENST00000455546 NCBP3Q53F19 620 aaKnown RBP10.09□□□□□ -0.79
GTF3C3-208ENST00000455546 EHMT2Q96KQ7 1210 aa10.06□□□□□ -0.8
GTF3C3-208ENST00000455546 NPM3O75607 178 aaKnown RBP10.01□□□□□ -0.81
GTF3C3-208ENST00000455546 SCAF1Q9H7N4 1312 aaKnown RBP10.01□□□□□ -0.81
GTF3C3-208ENST00000455546 MAPK8IP2Q13387 824 aaPredicted RBP9.99□□□□□ -0.81
GTF3C3-208ENST00000455546 DCAF8L2P0C7V8 631 aa9.97□□□□□ -0.81
GTF3C3-208ENST00000455546 SLC4A1APQ9BWU0 796 aaKnown RBP9.97□□□□□ -0.81
GTF3C3-208ENST00000455546 CNKSR2Q8WXI2 1034 aa9.96□□□□□ -0.82
GTF3C3-208ENST00000455546 RB1CC1Q8TDY2 1594 aa9.88□□□□□ -0.83
GTF3C3-208ENST00000455546 DNAJC5BQ9UF47 199 aa9.88□□□□□ -0.83
GTF3C3-208ENST00000455546 NACADO15069 1562 aa9.82□□□□□ -0.84
GTF3C3-208ENST00000455546 PABPN1Q86U42 306 aaKnown RBP eCLIP9.81□□□□□ -0.84
GTF3C3-208ENST00000455546 CSRNP3Q8WYN3 585 aa9.75□□□□□ -0.85
GTF3C3-208ENST00000455546 UNC13AQ9UPW8 1703 aa9.74□□□□□ -0.85
GTF3C3-208ENST00000455546 DMRT2Q9Y5R5 561 aa9.71□□□□□ -0.86
GTF3C3-208ENST00000455546 RNF216Q9NWF9 866 aaPredicted RBP9.69□□□□□ -0.86
GTF3C3-208ENST00000455546 BICRAQ9NZM4 1560 aa9.63□□□□□ -0.87
GTF3C3-208ENST00000455546 MYO15BQ96JP2 1530 aa9.63□□□□□ -0.87
GTF3C3-208ENST00000455546 ZBTB22O15209 634 aa9.63□□□□□ -0.87
GTF3C3-208ENST00000455546 ZCCHC6Q5VYS8 1495 aaKnown RBP9.59□□□□□ -0.87
GTF3C3-208ENST00000455546 HOXD11P31277 338 aaPredicted RBP9.59□□□□□ -0.87
GTF3C3-208ENST00000455546 DCAF1Q9Y4B6 1507 aa9.53□□□□□ -0.88
GTF3C3-208ENST00000455546 SCRIBQ14160 1630 aa9.53□□□□□ -0.88
GTF3C3-208ENST00000455546 FOXD4L1Q9NU39 408 aa9.49□□□□□ -0.89
GTF3C3-208ENST00000455546 CC2D2AQ9P2K1 1620 aa9.43□□□□□ -0.9
GTF3C3-208ENST00000455546 SLC4A2P04920 1241 aa9.4□□□□□ -0.9
GTF3C3-208ENST00000455546 CECR2Q9BXF3 1484 aa9.4□□□□□ -0.91
GTF3C3-208ENST00000455546 DCAF8L1A6NGE4 600 aa9.39□□□□□ -0.91
GTF3C3-208ENST00000455546 EIF4G1Q04637 1599 aaKnown RBP9.38□□□□□ -0.91
GTF3C3-208ENST00000455546 SHROOM4Q9ULL8 1493 aa9.37□□□□□ -0.91
GTF3C3-208ENST00000455546 MYCNP04198 464 aaPredicted RBP9.22□□□□□ -0.93
GTF3C3-208ENST00000455546 GRWD1Q9BQ67 446 aaKnown RBP eCLIP9.2□□□□□ -0.946e-8■■■■□ 20.2
GTF3C3-208ENST00000455546 U3KPZ7 1027 aaPredicted RBP9.09□□□□□ -0.95
GTF3C3-208ENST00000455546 NCAPD3P42695 1498 aa9.08□□□□□ -0.96
GTF3C3-208ENST00000455546 ATAD2BQ9ULI0 1458 aa9.08□□□□□ -0.96
GTF3C3-208ENST00000455546 SMARCA4P51532 1647 aa9.05□□□□□ -0.96
GTF3C3-208ENST00000455546 ATXN8OSP0DMR3 200 aa9.05□□□□□ -0.96
GTF3C3-208ENST00000455546 ATF5Q9Y2D1 282 aaPredicted RBP9.03□□□□□ -0.96
GTF3C3-208ENST00000455546 SMARCA2P51531 1590 aa9.01□□□□□ -0.97
GTF3C3-208ENST00000455546 DNAJC5Q9H3Z4 198 aa9.01□□□□□ -0.97
GTF3C3-208ENST00000455546 NESP48681 1621 aa9.01□□□□□ -0.97
GTF3C3-208ENST00000455546 ERCC6Q03468 1493 aa9□□□□□ -0.97
GTF3C3-208ENST00000455546 MROH2BQ7Z745 1585 aa8.99□□□□□ -0.97
GTF3C3-208ENST00000455546 BAZ1AQ9NRL2 1556 aaPredicted RBP8.99□□□□□ -0.97
GTF3C3-208ENST00000455546 BAZ1BQ9UIG0 1483 aaKnown RBP8.97□□□□□ -0.97
GTF3C3-208ENST00000455546 HMGXB3Q12766 1538 aa8.97□□□□□ -0.97
GTF3C3-208ENST00000455546 SAMD1Q6SPF0 538 aaPredicted RBP8.96□□□□□ -0.98
GTF3C3-208ENST00000455546 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP8.95□□□□□ -0.98
GTF3C3-208ENST00000455546 HNRNPUL2Q1KMD3 747 aaKnown RBP8.95□□□□□ -0.98
GTF3C3-208ENST00000455546 POTEDQ86YR6 584 aa8.93□□□□□ -0.98
GTF3C3-208ENST00000455546 CUX2O14529 1486 aa8.93□□□□□ -0.98
GTF3C3-208ENST00000455546 PEG3Q9GZU2 1588 aa8.92□□□□□ -0.98
GTF3C3-208ENST00000455546 WIZO95785 1651 aa8.9□□□□□ -0.98
GTF3C3-208ENST00000455546 KIF21AQ7Z4S6 1674 aa8.86□□□□□ -0.99
GTF3C3-208ENST00000455546 LAMC3Q9Y6N6 1575 aa8.86□□□□□ -0.99
GTF3C3-208ENST00000455546 THOC2Q8NI27 1593 aaKnown RBP8.83□□□□□ -1
GTF3C3-208ENST00000455546 FKBP8Q14318 412 aa8.83□□□□□ -1
GTF3C3-208ENST00000455546 CADPSQ9ULU8 1353 aa8.83□□□□□ -1
GTF3C3-208ENST00000455546 PDS5BQ9NTI5 1447 aa8.82□□□□□ -1
GTF3C3-208ENST00000455546 RNF39Q9H2S5 420 aa8.8□□□□□ -1
GTF3C3-208ENST00000455546 SPINK5Q9NQ38 1064 aaPredicted RBP8.8□□□□□ -1
GTF3C3-208ENST00000455546 ZNF219Q9P2Y4 722 aaPredicted RBP8.8□□□□□ -1
GTF3C3-208ENST00000455546 RSF1Q96T23 1441 aaPredicted RBP8.8□□□□□ -1
GTF3C3-208ENST00000455546 APLP2Q06481 763 aa8.79□□□□□ -1
GTF3C3-208ENST00000455546 TRHP20396 242 aaPredicted RBP8.77□□□□□ -1.01
GTF3C3-208ENST00000455546 MRC2Q9UBG0 1479 aa8.75□□□□□ -1.01
GTF3C3-208ENST00000455546 CAPN15O75808 1086 aa8.74□□□□□ -1.01
GTF3C3-208ENST00000455546 FANCD2Q9BXW9 1451 aa8.73□□□□□ -1.01
GTF3C3-208ENST00000455546 CEP164Q9UPV0 1460 aa8.71□□□□□ -1.01
GTF3C3-208ENST00000455546 TOP2AP11388 1531 aaKnown RBP8.71□□□□□ -1.01
GTF3C3-208ENST00000455546 CFTRP13569 1480 aa8.7□□□□□ -1.02
GTF3C3-208ENST00000455546 WDR62O43379 1518 aa8.7□□□□□ -1.02
GTF3C3-208ENST00000455546 TRIM41Q8WV44 630 aa8.68□□□□□ -1.02
GTF3C3-208ENST00000455546 CCDC88BA6NC98 1476 aa8.67□□□□□ -1.02
GTF3C3-208ENST00000455546 C1QBPQ07021 282 aaKnown RBP8.67□□□□□ -1.02
GTF3C3-208ENST00000455546 URB2Q14146 1524 aaKnown RBP8.66□□□□□ -1.02
GTF3C3-208ENST00000455546 POLA2Q14181 598 aa8.65□□□□□ -1.02
GTF3C3-208ENST00000455546 ABCB7O75027 752 aa8.64□□□□□ -1.03
GTF3C3-208ENST00000455546 MKRN4PQ13434 485 aaPredicted RBP8.63□□□□□ -1.03
GTF3C3-208ENST00000455546 PRDM2Q13029 1718 aa8.63□□□□□ -1.03
GTF3C3-208ENST00000455546 OSCARQ8IYS5 282 aa8.62□□□□□ -1.03
GTF3C3-208ENST00000455546 ZNF608Q9ULD9 1512 aaPredicted RBP8.58□□□□□ -1.04
GTF3C3-208ENST00000455546 TOPBP1Q92547 1522 aa8.56□□□□□ -1.04
GTF3C3-208ENST00000455546 FBLN2P98095 1184 aa8.56□□□□□ -1.04
GTF3C3-208ENST00000455546 IFT140Q96RY7 1462 aa8.53□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 72.9 ms