RNA–Protein interactions for RNA: ENST00000447232.6

PMS1-215, Transcript of PMS1 homolog 1, mismatch repair system component, humanhuman

TSL 2 BASIC

Gene PMS1, Length 2,576 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PMS1-215ENST00000447232 AEBP2Q6ZN18 517 aaPredicted RBP12.94□□□□□ -0.34
PMS1-215ENST00000447232 CHIC1Q5VXU3 224 aa12.34□□□□□ -0.43
PMS1-215ENST00000447232 SENP3Q9H4L4 574 aaPredicted RBP10.99□□□□□ -0.65
PMS1-215ENST00000447232 PHF23Q9BUL5 403 aaPredicted RBP10.88□□□□□ -0.67
PMS1-215ENST00000447232 POTEDQ86YR6 584 aa10.72□□□□□ -0.69
PMS1-215ENST00000447232 FOXD1Q16676 465 aa10.26□□□□□ -0.77
PMS1-215ENST00000447232 PLPPR3Q6T4P5 718 aa9.88□□□□□ -0.83
PMS1-215ENST00000447232 PPP6R1Q9UPN7 881 aa9.68□□□□□ -0.86
PMS1-215ENST00000447232 ADRA2BP18089 450 aa9.63□□□□□ -0.87
PMS1-215ENST00000447232 PIAS4Q8N2W9 510 aaPredicted RBP9.58□□□□□ -0.88
PMS1-215ENST00000447232 MSH5O43196 834 aa9.54□□□□□ -0.88
PMS1-215ENST00000447232 MAPK8IP2Q13387 824 aaPredicted RBP8.83□□□□□ -1
PMS1-215ENST00000447232 NISCHQ9Y2I1 1504 aa8.83□□□□□ -1
PMS1-215ENST00000447232 SCAF1Q9H7N4 1312 aaKnown RBP8.78□□□□□ -1
PMS1-215ENST00000447232 DMRT2Q9Y5R5 561 aa8.74□□□□□ -1.01
PMS1-215ENST00000447232 PPP4R3CPQ6ZMV5 832 aa8.68□□□□□ -1.02
PMS1-215ENST00000447232 ABCC9O60706 1549 aa8.55□□□□□ -1.04
PMS1-215ENST00000447232 CNKSR2Q8WXI2 1034 aa8.49□□□□□ -1.05
PMS1-215ENST00000447232 DNAJC5BQ9UF47 199 aa8.47□□□□□ -1.05
PMS1-215ENST00000447232 HOXD11P31277 338 aaPredicted RBP8.46□□□□□ -1.06
PMS1-215ENST00000447232 RNF216Q9NWF9 866 aaPredicted RBP8.4□□□□□ -1.06
PMS1-215ENST00000447232 DCAF8L1A6NGE4 600 aa8.35□□□□□ -1.07
PMS1-215ENST00000447232 NCBP3Q53F19 620 aaKnown RBP8.34□□□□□ -1.07
PMS1-215ENST00000447232 NPM3O75607 178 aaKnown RBP8.25□□□□□ -1.09
PMS1-215ENST00000447232 RNF39Q9H2S5 420 aa8.17□□□□□ -1.1
PMS1-215ENST00000447232 KCNA4P22459 653 aa8.16□□□□□ -1.1
PMS1-215ENST00000447232 CACNB1Q02641 598 aaPredicted RBP8.15□□□□□ -1.11
PMS1-215ENST00000447232 CCDC180Q9P1Z9 1646 aa8.14□□□□□ -1.11
PMS1-215ENST00000447232 DNAJC5Q9H3Z4 198 aa8.11□□□□□ -1.11
PMS1-215ENST00000447232 C1QBPQ07021 282 aaKnown RBP8.05□□□□□ -1.12
PMS1-215ENST00000447232 POTEHQ6S545 545 aa8.05□□□□□ -1.12
PMS1-215ENST00000447232 GRWD1Q9BQ67 446 aaKnown RBP eCLIP8.03□□□□□ -1.124e-6■■□□□ 13.1
PMS1-215ENST00000447232 RB1CC1Q8TDY2 1594 aa7.95□□□□□ -1.14
PMS1-215ENST00000447232 U3KPZ7 1027 aaPredicted RBP7.89□□□□□ -1.15
PMS1-215ENST00000447232 SLC4A2P04920 1241 aa7.88□□□□□ -1.15
PMS1-215ENST00000447232 PABPN1Q86U42 306 aaKnown RBP eCLIP7.86□□□□□ -1.15
PMS1-215ENST00000447232 NACADO15069 1562 aa7.8□□□□□ -1.16
PMS1-215ENST00000447232 UNC13AQ9UPW8 1703 aa7.8□□□□□ -1.16
PMS1-215ENST00000447232 BICRAQ9NZM4 1560 aa7.78□□□□□ -1.16
PMS1-215ENST00000447232 CECR2Q9BXF3 1484 aa7.76□□□□□ -1.17
PMS1-215ENST00000447232 SPINK5Q9NQ38 1064 aaPredicted RBP7.76□□□□□ -1.17
PMS1-215ENST00000447232 CC2D2AQ9P2K1 1620 aa7.72□□□□□ -1.17
PMS1-215ENST00000447232 CAPN15O75808 1086 aa7.71□□□□□ -1.17
PMS1-215ENST00000447232 SLC4A1APQ9BWU0 796 aaKnown RBP7.7□□□□□ -1.18
PMS1-215ENST00000447232 DSG3P32926 999 aa7.68□□□□□ -1.18
PMS1-215ENST00000447232 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP7.66□□□□□ -1.18
PMS1-215ENST00000447232 HNRNPUL2Q1KMD3 747 aaKnown RBP7.66□□□□□ -1.18
PMS1-215ENST00000447232 APLP2Q06481 763 aa7.63□□□□□ -1.19
PMS1-215ENST00000447232 SAMD1Q6SPF0 538 aaPredicted RBP7.63□□□□□ -1.19
PMS1-215ENST00000447232 SHROOM4Q9ULL8 1493 aa7.63□□□□□ -1.19
PMS1-215ENST00000447232 TRHP20396 242 aaPredicted RBP7.62□□□□□ -1.19
PMS1-215ENST00000447232 MYCNP04198 464 aaPredicted RBP7.61□□□□□ -1.19
PMS1-215ENST00000447232 EIF4G1Q04637 1599 aaKnown RBP7.6□□□□□ -1.19
PMS1-215ENST00000447232 ZNF219Q9P2Y4 722 aaPredicted RBP7.6□□□□□ -1.19
PMS1-215ENST00000447232 CUX2O14529 1486 aa7.59□□□□□ -1.19
PMS1-215ENST00000447232 FOXD4L1Q9NU39 408 aa7.58□□□□□ -1.2
PMS1-215ENST00000447232 MYO15BQ96JP2 1530 aa7.57□□□□□ -1.2
PMS1-215ENST00000447232 ABCB7O75027 752 aa7.55□□□□□ -1.2
PMS1-215ENST00000447232 DCAF8L2P0C7V8 631 aa7.55□□□□□ -1.2
PMS1-215ENST00000447232 ZBTB22O15209 634 aa7.52□□□□□ -1.21
PMS1-215ENST00000447232 TRIM41Q8WV44 630 aa7.49□□□□□ -1.21
PMS1-215ENST00000447232 PLSCR2Q9NRY7 297 aa7.47□□□□□ -1.21
PMS1-215ENST00000447232 ATF5Q9Y2D1 282 aaPredicted RBP7.47□□□□□ -1.21
PMS1-215ENST00000447232 POLA2Q14181 598 aa7.45□□□□□ -1.22
PMS1-215ENST00000447232 ERCC6Q03468 1493 aa7.4□□□□□ -1.23
PMS1-215ENST00000447232 SCRIBQ14160 1630 aa7.35□□□□□ -1.23
PMS1-215ENST00000447232 ATXN8OSP0DMR3 200 aa7.34□□□□□ -1.23
PMS1-215ENST00000447232 DCAF1Q9Y4B6 1507 aa7.29□□□□□ -1.24
PMS1-215ENST00000447232 RBM42Q9BTD8 480 aaKnown RBP7.29□□□□□ -1.24
PMS1-215ENST00000447232 THOC2Q8NI27 1593 aaKnown RBP7.28□□□□□ -1.24
PMS1-215ENST00000447232 ZBTB12Q9Y330 459 aaPredicted RBP7.26□□□□□ -1.25
PMS1-215ENST00000447232 CSRNP3Q8WYN3 585 aa7.24□□□□□ -1.25
PMS1-215ENST00000447232 NESP48681 1621 aa7.23□□□□□ -1.25
PMS1-215ENST00000447232 ZCCHC6Q5VYS8 1495 aaKnown RBP7.22□□□□□ -1.25
PMS1-215ENST00000447232 NCAPD3P42695 1498 aa7.22□□□□□ -1.25
PMS1-215ENST00000447232 OSCARQ8IYS5 282 aa7.19□□□□□ -1.26
PMS1-215ENST00000447232 AKT1S1Q96B36 256 aa7.15□□□□□ -1.26
PMS1-215ENST00000447232 EHMT2Q96KQ7 1210 aa7.15□□□□□ -1.26
PMS1-215ENST00000447232 BAZ1AQ9NRL2 1556 aaPredicted RBP7.15□□□□□ -1.26
PMS1-215ENST00000447232 SMARCA2P51531 1590 aa7.14□□□□□ -1.27
PMS1-215ENST00000447232 CHRDL2Q6WN34 429 aa7.13□□□□□ -1.27
PMS1-215ENST00000447232 HMGXB3Q12766 1538 aa7.12□□□□□ -1.27
PMS1-215ENST00000447232 FBLN2P98095 1184 aa7.12□□□□□ -1.27
PMS1-215ENST00000447232 MKRN4PQ13434 485 aaPredicted RBP7.12□□□□□ -1.27
PMS1-215ENST00000447232 KIF21AQ7Z4S6 1674 aa7.12□□□□□ -1.27
PMS1-215ENST00000447232 RIMBP3CA6NJZ7 1639 aa7.12□□□□□ -1.27
PMS1-215ENST00000447232 RIMBP3BA6NNM3 1639 aa7.12□□□□□ -1.27
PMS1-215ENST00000447232 RIMBP3Q9UFD9 1639 aa7.12□□□□□ -1.27
PMS1-215ENST00000447232 LAMC3Q9Y6N6 1575 aa7.11□□□□□ -1.27
PMS1-215ENST00000447232 ATAD2BQ9ULI0 1458 aa7.11□□□□□ -1.27
PMS1-215ENST00000447232 REM2Q8IYK8 340 aaPredicted RBP7.11□□□□□ -1.27
PMS1-215ENST00000447232 WDR62O43379 1518 aa7.07□□□□□ -1.28
PMS1-215ENST00000447232 PDS5BQ9NTI5 1447 aa7.07□□□□□ -1.28
PMS1-215ENST00000447232 SPDYE2BA6NHP3 402 aa7.06□□□□□ -1.28
PMS1-215ENST00000447232 SPDYE6P0CI01 402 aa7.06□□□□□ -1.28
PMS1-215ENST00000447232 SPDYE2Q495Y8 402 aa7.06□□□□□ -1.28
PMS1-215ENST00000447232 ARHGEF11O15085 1522 aa7.05□□□□□ -1.28
PMS1-215ENST00000447232 MRC2Q9UBG0 1479 aa7.05□□□□□ -1.28
PMS1-215ENST00000447232 PITPNM1O00562 1244 aa7.02□□□□□ -1.29
PMS1-215ENST00000447232 ZNF692Q9BU19 519 aaPredicted RBP7□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms