RNA–Protein interactions for RNA: ENST00000443197.5

CALD1-210, Transcript of caldesmon 1, humanhuman

TSL 5

Gene CALD1, Length 4,173 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CALD1-210ENST00000443197 NISCHQ9Y2I1 1504 aa20.74■□□□□ 0.91
CALD1-210ENST00000443197 DCAF8L2P0C7V8 631 aa19.38■□□□□ 0.69
CALD1-210ENST00000443197 SHROOM4Q9ULL8 1493 aa18.78■□□□□ 0.6
CALD1-210ENST00000443197 SUPT5HO00267 1087 aaKnown RBP18.57■□□□□ 0.56
CALD1-210ENST00000443197 EHMT2Q96KQ7 1210 aa17.6■□□□□ 0.41
CALD1-210ENST00000443197 ABCC9O60706 1549 aa17.49■□□□□ 0.39
CALD1-210ENST00000443197 FAM9AQ8IZU1 332 aaPredicted RBP17.38■□□□□ 0.37
CALD1-210ENST00000443197 ZCCHC6Q5VYS8 1495 aaKnown RBP17.29■□□□□ 0.36
CALD1-210ENST00000443197 CCDC180Q9P1Z9 1646 aa17.25■□□□□ 0.35
CALD1-210ENST00000443197 TRIM41Q8WV44 630 aa17.16■□□□□ 0.34
CALD1-210ENST00000443197 CHIC1Q5VXU3 224 aa17.13■□□□□ 0.33
CALD1-210ENST00000443197 PABPN1Q86U42 306 aaKnown RBP eCLIP17.08■□□□□ 0.33
CALD1-210ENST00000443197 LOC105371045A0A1W2PR82 267 aa16.96■□□□□ 0.31
CALD1-210ENST00000443197 PCGF6Q9BYE7 350 aa16.96■□□□□ 0.31
CALD1-210ENST00000443197 SCRIBQ14160 1630 aa16.92■□□□□ 0.3
CALD1-210ENST00000443197 TTBK1Q5TCY1 1321 aaPredicted RBP16.89■□□□□ 0.29
CALD1-210ENST00000443197 RANGAP1P46060 587 aaPredicted RBP16.83■□□□□ 0.28
CALD1-210ENST00000443197 PPARGC1BQ86YN6 1023 aaKnown RBP16.72■□□□□ 0.27
CALD1-210ENST00000443197 UBTFP17480 764 aaKnown RBP16.68■□□□□ 0.26
CALD1-210ENST00000443197 APLP2Q06481 763 aa16.56■□□□□ 0.24
CALD1-210ENST00000443197 DCAF1Q9Y4B6 1507 aa16.55■□□□□ 0.24
CALD1-210ENST00000443197 RSF1Q96T23 1441 aaPredicted RBP16.49■□□□□ 0.23
CALD1-210ENST00000443197 NACADO15069 1562 aa16.46■□□□□ 0.23
CALD1-210ENST00000443197 RB1CC1Q8TDY2 1594 aa16.46■□□□□ 0.22
CALD1-210ENST00000443197 CECR2Q9BXF3 1484 aa16.41■□□□□ 0.22
CALD1-210ENST00000443197 ATP1B4Q9UN42 357 aaPredicted RBP16.36■□□□□ 0.21
CALD1-210ENST00000443197 TRIM26Q12899 539 aaPredicted RBP16.36■□□□□ 0.21
CALD1-210ENST00000443197 MYO15BQ96JP2 1530 aa16.35■□□□□ 0.21
CALD1-210ENST00000443197 CCER1Q8TC90 406 aaPredicted RBP16.27■□□□□ 0.2
CALD1-210ENST00000443197 HRCP23327 699 aa16.19■□□□□ 0.18
CALD1-210ENST00000443197 MROH2BQ7Z745 1585 aa16.18■□□□□ 0.18
CALD1-210ENST00000443197 CSRNP3Q8WYN3 585 aa16.13■□□□□ 0.17
CALD1-210ENST00000443197 HNRNPUL2Q1KMD3 747 aaKnown RBP16.08■□□□□ 0.16
CALD1-210ENST00000443197 BAZ1AQ9NRL2 1556 aaPredicted RBP16.07■□□□□ 0.16
CALD1-210ENST00000443197 ITGAEP38570 1179 aa16.05■□□□□ 0.16
CALD1-210ENST00000443197 ZEB1P37275 1124 aaPredicted RBP16.05■□□□□ 0.16
CALD1-210ENST00000443197 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.04■□□□□ 0.16
CALD1-210ENST00000443197 WIZO95785 1651 aa15.99■□□□□ 0.15
CALD1-210ENST00000443197 BAZ1BQ9UIG0 1483 aaKnown RBP15.94■□□□□ 0.14
CALD1-210ENST00000443197 CCDC88BA6NC98 1476 aa15.89■□□□□ 0.13
CALD1-210ENST00000443197 P3H3Q8IVL6 736 aa15.89■□□□□ 0.13
CALD1-210ENST00000443197 WRNQ14191 1432 aaPredicted RBP eCLIP15.84■□□□□ 0.13
CALD1-210ENST00000443197 ABCC8Q09428 1581 aa15.82■□□□□ 0.12
CALD1-210ENST00000443197 SOGA1O94964 1423 aa15.78■□□□□ 0.12
CALD1-210ENST00000443197 SMARCA4P51532 1647 aa15.74■□□□□ 0.11
CALD1-210ENST00000443197 FBLN2P98095 1184 aa15.74■□□□□ 0.11
CALD1-210ENST00000443197 FAM50AQ14320 339 aaKnown RBP15.72■□□□□ 0.11
CALD1-210ENST00000443197 TOP2AP11388 1531 aaKnown RBP15.71■□□□□ 0.11
CALD1-210ENST00000443197 ARID3CA6NKF2 412 aa15.71■□□□□ 0.1
CALD1-210ENST00000443197 ATAD2BQ9ULI0 1458 aa15.68■□□□□ 0.1
CALD1-210ENST00000443197 CEP162Q5TB80 1403 aa15.66■□□□□ 0.1
CALD1-210ENST00000443197 YTHDC1Q96MU7 727 aaKnown RBP15.63■□□□□ 0.09
CALD1-210ENST00000443197 SMARCA2P51531 1590 aa15.62■□□□□ 0.09
CALD1-210ENST00000443197 CLIP1P30622 1438 aa15.61■□□□□ 0.09
CALD1-210ENST00000443197 EEA1Q15075 1411 aa15.59■□□□□ 0.09
CALD1-210ENST00000443197 GOLGA3Q08378 1498 aa15.58■□□□□ 0.08
CALD1-210ENST00000443197 TNIKQ9UKE5 1360 aa15.56■□□□□ 0.08
CALD1-210ENST00000443197 RUSC2Q8N2Y8 1516 aa15.55■□□□□ 0.08
CALD1-210ENST00000443197 KIF27Q86VH2 1401 aa15.5■□□□□ 0.07
CALD1-210ENST00000443197 NEUROD1Q13562 356 aa15.49■□□□□ 0.07
CALD1-210ENST00000443197 CEP164Q9UPV0 1460 aa15.49■□□□□ 0.07
CALD1-210ENST00000443197 DIEXFQ68CQ4 756 aaKnown RBP15.46■□□□□ 0.07
CALD1-210ENST00000443197 BICRAQ9NZM4 1560 aa15.45■□□□□ 0.06
CALD1-210ENST00000443197 CENPBP07199 599 aaPredicted RBP15.45■□□□□ 0.06
CALD1-210ENST00000443197 CUX2O14529 1486 aa15.43■□□□□ 0.06
CALD1-210ENST00000443197 TRIM52Q96A61 297 aa15.41■□□□□ 0.06
CALD1-210ENST00000443197 CADPSQ9ULU8 1353 aa15.4■□□□□ 0.06
CALD1-210ENST00000443197 EIF4G1Q04637 1599 aaKnown RBP15.39■□□□□ 0.05
CALD1-210ENST00000443197 MYT1LQ9UL68 1186 aa15.38■□□□□ 0.05
CALD1-210ENST00000443197 CARMIL1Q5VZK9 1371 aa15.35■□□□□ 0.05
CALD1-210ENST00000443197 RAPGEF2Q9Y4G8 1499 aa15.33■□□□□ 0.04
CALD1-210ENST00000443197 UNC13AQ9UPW8 1703 aa15.33■□□□□ 0.04
CALD1-210ENST00000443197 TDRD9Q8NDG6 1382 aaKnown RBP15.33■□□□□ 0.04
CALD1-210ENST00000443197 ZNF777Q9ULD5 760 aaPredicted RBP15.33■□□□□ 0.04
CALD1-210ENST00000443197 CHMP7Q8WUX9 453 aaPredicted RBP15.32■□□□□ 0.04
CALD1-210ENST00000443197 NCAPD3P42695 1498 aa15.32■□□□□ 0.04
CALD1-210ENST00000443197 CNGB1Q14028 1251 aaPredicted RBP15.32■□□□□ 0.04
CALD1-210ENST00000443197 POLR3GLQ9BT43 218 aa15.31■□□□□ 0.04
CALD1-210ENST00000443197 KANK4Q5T7N3 995 aaPredicted RBP15.29■□□□□ 0.04
CALD1-210ENST00000443197 CHIC2Q9UKJ5 165 aa15.29■□□□□ 0.04
CALD1-210ENST00000443197 ZNF316A6NFI3 1004 aaPredicted RBP15.28■□□□□ 0.04
CALD1-210ENST00000443197 DNAJC5BQ9UF47 199 aa15.25■□□□□ 0.03
CALD1-210ENST00000443197 MTUS2Q5JR59 1369 aa15.25■□□□□ 0.03
CALD1-210ENST00000443197 VPS8Q8N3P4 1428 aa15.23■□□□□ 0.03
CALD1-210ENST00000443197 ERCC6Q03468 1493 aa15.22■□□□□ 0.03
CALD1-210ENST00000443197 FANCD2Q9BXW9 1451 aa15.21■□□□□ 0.03
CALD1-210ENST00000443197 SYNJ1O43426 1573 aa15.21■□□□□ 0.02
CALD1-210ENST00000443197 PDS5BQ9NTI5 1447 aa15.2■□□□□ 0.02
CALD1-210ENST00000443197 CDK11AQ9UQ88 783 aaPredicted RBP15.19■□□□□ 0.02
CALD1-210ENST00000443197 ZNF326Q5BKZ1 582 aaKnown RBP15.18■□□□□ 0.02
CALD1-210ENST00000443197 NESP48681 1621 aa15.15■□□□□ 0.02
CALD1-210ENST00000443197 RRP7BPQ9NSQ0 103 aa15.14■□□□□ 0.01
CALD1-210ENST00000443197 RAD54L2Q9Y4B4 1467 aa15.14■□□□□ 0.01
CALD1-210ENST00000443197 CC2D2AQ9P2K1 1620 aa15.13■□□□□ 0.01
CALD1-210ENST00000443197 CFTRP13569 1480 aa15.13■□□□□ 0.01
CALD1-210ENST00000443197 FGD5Q6ZNL6 1462 aa15.12■□□□□ 0.01
CALD1-210ENST00000443197 IGF1RP08069 1367 aa15.12■□□□□ 0.01
CALD1-210ENST00000443197 HIRIP3Q9BW71 556 aaPredicted RBP15.09■□□□□ 0.01
CALD1-210ENST00000443197 CCNB3Q8WWL7 1395 aa15.06■□□□□ 0
CALD1-210ENST00000443197 HMGXB3Q12766 1538 aa15.06■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 6.8 ms