RNA–Protein interactions for RNA: ENST00000429836.5

SEMA4D-209, Transcript of semaphorin 4D, humanhuman

TSL 2

Gene SEMA4D, Length 2,895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA4D-209ENST00000429836 NISCHQ9Y2I1 1504 aa20.76■□□□□ 0.91
SEMA4D-209ENST00000429836 HRCP23327 699 aa18.83■□□□□ 0.61
SEMA4D-209ENST00000429836 SHROOM4Q9ULL8 1493 aa18.63■□□□□ 0.57
SEMA4D-209ENST00000429836 PPARGC1BQ86YN6 1023 aaKnown RBP18.57■□□□□ 0.56
SEMA4D-209ENST00000429836 SUPT5HO00267 1087 aaKnown RBP18.56■□□□□ 0.56
SEMA4D-209ENST00000429836 PCGF6Q9BYE7 350 aa18.5■□□□□ 0.55
SEMA4D-209ENST00000429836 MYO15BQ96JP2 1530 aa18.39■□□□□ 0.54
SEMA4D-209ENST00000429836 CHIC1Q5VXU3 224 aa18.21■□□□□ 0.51
SEMA4D-209ENST00000429836 PELP1Q8IZL8 1130 aaKnown RBP18.12■□□□□ 0.49
SEMA4D-209ENST00000429836 SCAF1Q9H7N4 1312 aaKnown RBP17.9■□□□□ 0.46
SEMA4D-209ENST00000429836 DCAF1Q9Y4B6 1507 aa17.89■□□□□ 0.45
SEMA4D-209ENST00000429836 LOC105371045A0A1W2PR82 267 aa17.88■□□□□ 0.45
SEMA4D-209ENST00000429836 TRIM26Q12899 539 aaPredicted RBP17.79■□□□□ 0.44
SEMA4D-209ENST00000429836 CCDC180Q9P1Z9 1646 aa17.76■□□□□ 0.43
SEMA4D-209ENST00000429836 DCAF8L2P0C7V8 631 aa17.71■□□□□ 0.43
SEMA4D-209ENST00000429836 ZCCHC6Q5VYS8 1495 aaKnown RBP17.66■□□□□ 0.42
SEMA4D-209ENST00000429836 ZEB1P37275 1124 aaPredicted RBP17.6■□□□□ 0.41
SEMA4D-209ENST00000429836 ACIN1Q9UKV3 1341 aaKnown RBP17.4■□□□□ 0.38
SEMA4D-209ENST00000429836 NEUROD1Q13562 356 aa17.4■□□□□ 0.38
SEMA4D-209ENST00000429836 MYT1Q01538 1121 aa17.38■□□□□ 0.37
SEMA4D-209ENST00000429836 GTF3C3Q9Y5Q9 886 aa17.3■□□□□ 0.36
SEMA4D-209ENST00000429836 ABCC9O60706 1549 aa17.22■□□□□ 0.35
SEMA4D-209ENST00000429836 EHMT2Q96KQ7 1210 aa17.21■□□□□ 0.35
SEMA4D-209ENST00000429836 FAM9AQ8IZU1 332 aaPredicted RBP17.2■□□□□ 0.34
SEMA4D-209ENST00000429836 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.14■□□□□ 0.33
SEMA4D-209ENST00000429836 CENPBP07199 599 aaPredicted RBP17.13■□□□□ 0.33
SEMA4D-209ENST00000429836 DIEXFQ68CQ4 756 aaKnown RBP17.09■□□□□ 0.33
SEMA4D-209ENST00000429836 TRIM41Q8WV44 630 aa17.09■□□□□ 0.33
SEMA4D-209ENST00000429836 CCER1Q8TC90 406 aaPredicted RBP17.06■□□□□ 0.32
SEMA4D-209ENST00000429836 YTHDC1Q96MU7 727 aaKnown RBP16.91■□□□□ 0.3
SEMA4D-209ENST00000429836 TTBK1Q5TCY1 1321 aaPredicted RBP16.81■□□□□ 0.28
SEMA4D-209ENST00000429836 RSF1Q96T23 1441 aaPredicted RBP16.77■□□□□ 0.28
SEMA4D-209ENST00000429836 RB1CC1Q8TDY2 1594 aa16.76■□□□□ 0.27
SEMA4D-209ENST00000429836 ZNF316A6NFI3 1004 aaPredicted RBP16.72■□□□□ 0.27
SEMA4D-209ENST00000429836 MIER1Q8N108 512 aa16.68■□□□□ 0.26
SEMA4D-209ENST00000429836 NACADO15069 1562 aa16.65■□□□□ 0.26
SEMA4D-209ENST00000429836 SCRIBQ14160 1630 aa16.51■□□□□ 0.23
SEMA4D-209ENST00000429836 BCL11AQ9H165 835 aa16.44■□□□□ 0.22
SEMA4D-209ENST00000429836 SUPT16HQ9Y5B9 1047 aaKnown RBP16.43■□□□□ 0.22
SEMA4D-209ENST00000429836 ANP32EQ9BTT0 268 aa16.41■□□□□ 0.22
SEMA4D-209ENST00000429836 WRNQ14191 1432 aaPredicted RBP eCLIP16.41■□□□□ 0.22
SEMA4D-209ENST00000429836 TSHZ2Q9NRE2 1034 aa16.38■□□□□ 0.21
SEMA4D-209ENST00000429836 CEP162Q5TB80 1403 aa16.38■□□□□ 0.21
SEMA4D-209ENST00000429836 HNRNPUL2Q1KMD3 747 aaKnown RBP16.36■□□□□ 0.21
SEMA4D-209ENST00000429836 CECR2Q9BXF3 1484 aa16.33■□□□□ 0.2
SEMA4D-209ENST00000429836 CSRNP3Q8WYN3 585 aa16.29■□□□□ 0.2
SEMA4D-209ENST00000429836 MROH2BQ7Z745 1585 aa16.28■□□□□ 0.2
SEMA4D-209ENST00000429836 PABPN1Q86U42 306 aaKnown RBP eCLIP16.26■□□□□ 0.19
SEMA4D-209ENST00000429836 WIZO95785 1651 aa16.25■□□□□ 0.19
SEMA4D-209ENST00000429836 UNC13AQ9UPW8 1703 aa16.25■□□□□ 0.19
SEMA4D-209ENST00000429836 UBTFP17480 764 aaKnown RBP16.23■□□□□ 0.19
SEMA4D-209ENST00000429836 CCDC88BA6NC98 1476 aa16.23■□□□□ 0.19
SEMA4D-209ENST00000429836 CLSPNQ9HAW4 1339 aa16.23■□□□□ 0.19
SEMA4D-209ENST00000429836 ABCC8Q09428 1581 aa16.21■□□□□ 0.19
SEMA4D-209ENST00000429836 TNIKQ9UKE5 1360 aa16.21■□□□□ 0.19
SEMA4D-209ENST00000429836 SOGA1O94964 1423 aa16.19■□□□□ 0.18
SEMA4D-209ENST00000429836 EIF4G1Q04637 1599 aaKnown RBP16.18■□□□□ 0.18
SEMA4D-209ENST00000429836 BCANQ96GW7 911 aa16.17■□□□□ 0.18
SEMA4D-209ENST00000429836 BICRAQ9NZM4 1560 aa16.14■□□□□ 0.18
SEMA4D-209ENST00000429836 RUSC2Q8N2Y8 1516 aa16.12■□□□□ 0.17
SEMA4D-209ENST00000429836 KCNH8Q96L42 1107 aa16.07■□□□□ 0.16
SEMA4D-209ENST00000429836 BAZ1AQ9NRL2 1556 aaPredicted RBP16.05■□□□□ 0.16
SEMA4D-209ENST00000429836 FKBP8Q14318 412 aa16.01■□□□□ 0.15
SEMA4D-209ENST00000429836 GOLGA3Q08378 1498 aa16■□□□□ 0.15
SEMA4D-209ENST00000429836 RBM19Q9Y4C8 960 aaKnown RBP15.98■□□□□ 0.15
SEMA4D-209ENST00000429836 RANGAP1P46060 587 aaPredicted RBP15.96■□□□□ 0.15
SEMA4D-209ENST00000429836 DHX57Q6P158 1386 aaKnown RBP15.96■□□□□ 0.15
SEMA4D-209ENST00000429836 EEA1Q15075 1411 aa15.94■□□□□ 0.14
SEMA4D-209ENST00000429836 APLP2Q06481 763 aa15.94■□□□□ 0.14
SEMA4D-209ENST00000429836 CLIP1P30622 1438 aa15.92■□□□□ 0.14
SEMA4D-209ENST00000429836 ITGAEP38570 1179 aa15.92■□□□□ 0.14
SEMA4D-209ENST00000429836 VPS8Q8N3P4 1428 aa15.88■□□□□ 0.13
SEMA4D-209ENST00000429836 MSH5O43196 834 aa15.88■□□□□ 0.13
SEMA4D-209ENST00000429836 TOP2AP11388 1531 aaKnown RBP15.85■□□□□ 0.13
SEMA4D-209ENST00000429836 SMARCA2P51531 1590 aa15.85■□□□□ 0.13
SEMA4D-209ENST00000429836 PRKCSHP14314 528 aaPredicted RBP15.83■□□□□ 0.12
SEMA4D-209ENST00000429836 NEFLP07196 543 aa15.81■□□□□ 0.12
SEMA4D-209ENST00000429836 CEP164Q9UPV0 1460 aa15.81■□□□□ 0.12
SEMA4D-209ENST00000429836 DDX10Q13206 875 aaKnown RBP15.77■□□□□ 0.12
SEMA4D-209ENST00000429836 TRIM52Q96A61 297 aa15.77■□□□□ 0.12
SEMA4D-209ENST00000429836 KIF21BO75037 1637 aa15.75■□□□□ 0.11
SEMA4D-209ENST00000429836 KANK4Q5T7N3 995 aaPredicted RBP15.73■□□□□ 0.11
SEMA4D-209ENST00000429836 RAPGEF2Q9Y4G8 1499 aa15.72■□□□□ 0.11
SEMA4D-209ENST00000429836 ERICH6Q7L0X2 663 aa15.7■□□□□ 0.1
SEMA4D-209ENST00000429836 SMARCA4P51532 1647 aa15.68■□□□□ 0.1
SEMA4D-209ENST00000429836 HIRIP3Q9BW71 556 aaPredicted RBP15.66■□□□□ 0.1
SEMA4D-209ENST00000429836 SYNJ1O43426 1573 aa15.66■□□□□ 0.1
SEMA4D-209ENST00000429836 IRX6P78412 446 aaPredicted RBP15.65■□□□□ 0.1
SEMA4D-209ENST00000429836 BAZ1BQ9UIG0 1483 aaKnown RBP15.64■□□□□ 0.09
SEMA4D-209ENST00000429836 FANCIQ9NVI1 1328 aa15.63■□□□□ 0.09
SEMA4D-209ENST00000429836 PPP1R15AO75807 674 aaPredicted RBP15.61■□□□□ 0.09
SEMA4D-209ENST00000429836 WDR97A6NE52 1622 aa15.59■□□□□ 0.09
SEMA4D-209ENST00000429836 DEKP35659 375 aaKnown RBP15.59■□□□□ 0.09
SEMA4D-209ENST00000429836 CDK11AQ9UQ88 783 aaPredicted RBP15.59■□□□□ 0.09
SEMA4D-209ENST00000429836 SIN3AQ96ST3 1273 aa15.58■□□□□ 0.09
SEMA4D-209ENST00000429836 RRBP1Q9P2E9 1410 aaKnown RBP15.58■□□□□ 0.09
SEMA4D-209ENST00000429836 MAPKBP1O60336 1514 aa15.58■□□□□ 0.08
SEMA4D-209ENST00000429836 ARAP1Q96P48 1450 aa15.56■□□□□ 0.08
SEMA4D-209ENST00000429836 RAB3GAP2Q9H2M9 1393 aa15.56■□□□□ 0.08
SEMA4D-209ENST00000429836 ANP32CO43423 234 aa15.56■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms