RNA–Protein interactions for RNA: ENST00000416123.6

COL12A1-203, Transcript of collagen type XII alpha 1 chain, humanhuman

TSL 5 BASIC

Gene COL12A1, Length 8,964 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1-203ENST00000416123 DCAF8L2P0C7V8 631 aa18.97■□□□□ 0.63
COL12A1-203ENST00000416123 SUPT5HO00267 1087 aaKnown RBP17.78■□□□□ 0.44
COL12A1-203ENST00000416123 NISCHQ9Y2I1 1504 aa17.77■□□□□ 0.43
COL12A1-203ENST00000416123 SHROOM4Q9ULL8 1493 aa17.65■□□□□ 0.42
COL12A1-203ENST00000416123 EHMT2Q96KQ7 1210 aa17.55■□□□□ 0.4
COL12A1-203ENST00000416123 TTBK1Q5TCY1 1321 aaPredicted RBP16.88■□□□□ 0.29
COL12A1-203ENST00000416123 FAM9AQ8IZU1 332 aaPredicted RBP16.86■□□□□ 0.29
COL12A1-203ENST00000416123 APLP2Q06481 763 aa16.79■□□□□ 0.28
COL12A1-203ENST00000416123 RANGAP1P46060 587 aaPredicted RBP16.74■□□□□ 0.27
COL12A1-203ENST00000416123 ATP1B4Q9UN42 357 aaPredicted RBP16.55■□□□□ 0.24
COL12A1-203ENST00000416123 PCGF6Q9BYE7 350 aa16.45■□□□□ 0.22
COL12A1-203ENST00000416123 PELP1Q8IZL8 1130 aaKnown RBP16.37■□□□□ 0.21
COL12A1-203ENST00000416123 TRIM41Q8WV44 630 aa16.36■□□□□ 0.21
COL12A1-203ENST00000416123 UBTFP17480 764 aaKnown RBP16.27■□□□□ 0.2
COL12A1-203ENST00000416123 CCER1Q8TC90 406 aaPredicted RBP16.19■□□□□ 0.18
COL12A1-203ENST00000416123 PPARGC1BQ86YN6 1023 aaKnown RBP16.18■□□□□ 0.18
COL12A1-203ENST00000416123 MYT1LQ9UL68 1186 aa15.93■□□□□ 0.14
COL12A1-203ENST00000416123 YTHDC1Q96MU7 727 aaKnown RBP15.93■□□□□ 0.14
COL12A1-203ENST00000416123 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.89■□□□□ 0.13
COL12A1-203ENST00000416123 HNRNPUL2Q1KMD3 747 aaKnown RBP15.89■□□□□ 0.13
COL12A1-203ENST00000416123 ERICH6Q7L0X2 663 aa15.89■□□□□ 0.13
COL12A1-203ENST00000416123 ITGAEP38570 1179 aa15.89■□□□□ 0.13
COL12A1-203ENST00000416123 CENPBP07199 599 aaPredicted RBP15.87■□□□□ 0.13
COL12A1-203ENST00000416123 ZEB1P37275 1124 aaPredicted RBP15.87■□□□□ 0.13
COL12A1-203ENST00000416123 CHIC1Q5VXU3 224 aa15.82■□□□□ 0.12
COL12A1-203ENST00000416123 POLR3GLQ9BT43 218 aa15.78■□□□□ 0.12
COL12A1-203ENST00000416123 LOC105371045A0A1W2PR82 267 aa15.73■□□□□ 0.11
COL12A1-203ENST00000416123 CNGB1Q14028 1251 aaPredicted RBP15.72■□□□□ 0.11
COL12A1-203ENST00000416123 ABCC9O60706 1549 aa15.68■□□□□ 0.1
COL12A1-203ENST00000416123 NEFLP07196 543 aa15.68■□□□□ 0.1
COL12A1-203ENST00000416123 PABPN1Q86U42 306 aaKnown RBP eCLIP15.66■□□□□ 0.1
COL12A1-203ENST00000416123 TRIM26Q12899 539 aaPredicted RBP15.6■□□□□ 0.09
COL12A1-203ENST00000416123 SLC4A1APQ9BWU0 796 aaKnown RBP15.55■□□□□ 0.08
COL12A1-203ENST00000416123 FAM50AQ14320 339 aaKnown RBP15.42■□□□□ 0.06
COL12A1-203ENST00000416123 FBLN2P98095 1184 aa15.36■□□□□ 0.05
COL12A1-203ENST00000416123 HRCP23327 699 aa15.36■□□□□ 0.05
COL12A1-203ENST00000416123 TRIM52Q96A61 297 aa15.31■□□□□ 0.04
COL12A1-203ENST00000416123 DAXXQ9UER7 740 aaPredicted RBP15.29■□□□□ 0.04
COL12A1-203ENST00000416123 NEUROD1Q13562 356 aa15.28■□□□□ 0.04
COL12A1-203ENST00000416123 ARID3CA6NKF2 412 aa15.22■□□□□ 0.03
COL12A1-203ENST00000416123 ZNF326Q5BKZ1 582 aaKnown RBP15.18■□□□□ 0.02
COL12A1-203ENST00000416123 MYT1Q01538 1121 aa15.17■□□□□ 0.02
COL12A1-203ENST00000416123 P3H3Q8IVL6 736 aa15.17■□□□□ 0.02
COL12A1-203ENST00000416123 SCRIBQ14160 1630 aa15.16■□□□□ 0.02
COL12A1-203ENST00000416123 DIEXFQ68CQ4 756 aaKnown RBP15.11■□□□□ 0.01
COL12A1-203ENST00000416123 CLSPNQ9HAW4 1339 aa15.09■□□□□ 0.01
COL12A1-203ENST00000416123 BCANQ96GW7 911 aa15.07■□□□□ 0
COL12A1-203ENST00000416123 SLC24A1O60721 1099 aa15.06■□□□□ 0
COL12A1-203ENST00000416123 BCL11AQ9H165 835 aa15.03■□□□□ -0
COL12A1-203ENST00000416123 PLPPR3Q6T4P5 718 aa15.01□□□□□ -0.01
COL12A1-203ENST00000416123 ZNF777Q9ULD5 760 aaPredicted RBP14.99□□□□□ -0.01
COL12A1-203ENST00000416123 ZNF316A6NFI3 1004 aaPredicted RBP14.96□□□□□ -0.01
COL12A1-203ENST00000416123 ANP32CO43423 234 aa14.89□□□□□ -0.03
COL12A1-203ENST00000416123 CANXP27824 592 aaKnown RBP14.8□□□□□ -0.04
COL12A1-203ENST00000416123 CSRNP3Q8WYN3 585 aa14.79□□□□□ -0.04
COL12A1-203ENST00000416123 CHGAP10645 457 aaKnown RBP14.79□□□□□ -0.04
COL12A1-203ENST00000416123 ZBTB47Q9UFB7 747 aaPredicted RBP14.79□□□□□ -0.04
COL12A1-203ENST00000416123 RTL5Q5HYW3 569 aaPredicted RBP14.77□□□□□ -0.05
COL12A1-203ENST00000416123 ESF1Q9H501 851 aaKnown RBP14.77□□□□□ -0.05
COL12A1-203ENST00000416123 STAG3Q9UJ98 1225 aa14.74□□□□□ -0.05
COL12A1-203ENST00000416123 GTF3C3Q9Y5Q9 886 aa14.72□□□□□ -0.05
COL12A1-203ENST00000416123 NEFMP07197 916 aa14.71□□□□□ -0.05
COL12A1-203ENST00000416123 CCDC180Q9P1Z9 1646 aa14.7□□□□□ -0.06
COL12A1-203ENST00000416123 SENP3Q9H4L4 574 aaPredicted RBP14.7□□□□□ -0.06
COL12A1-203ENST00000416123 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.7□□□□□ -0.06
COL12A1-203ENST00000416123 CDK11AQ9UQ88 783 aaPredicted RBP14.69□□□□□ -0.06
COL12A1-203ENST00000416123 CHIC2Q9UKJ5 165 aa14.67□□□□□ -0.06
COL12A1-203ENST00000416123 NPM1P06748 294 aaKnown RBP eCLIP14.66□□□□□ -0.06
COL12A1-203ENST00000416123 ZCCHC6Q5VYS8 1495 aaKnown RBP14.62□□□□□ -0.07
COL12A1-203ENST00000416123 SALL2Q9Y467 1007 aaPredicted RBP14.61□□□□□ -0.07
COL12A1-203ENST00000416123 TONSLQ96HA7 1378 aa14.57□□□□□ -0.08
COL12A1-203ENST00000416123 PLEKHG5O94827 1062 aa14.57□□□□□ -0.08
COL12A1-203ENST00000416123 KDM2AQ9Y2K7 1162 aa14.56□□□□□ -0.08
COL12A1-203ENST00000416123 SCAF1Q9H7N4 1312 aaKnown RBP14.56□□□□□ -0.08
COL12A1-203ENST00000416123 CHMP7Q8WUX9 453 aaPredicted RBP14.56□□□□□ -0.08
COL12A1-203ENST00000416123 NPM2Q86SE8 214 aaKnown RBP14.55□□□□□ -0.08
COL12A1-203ENST00000416123 RB1CC1Q8TDY2 1594 aa14.54□□□□□ -0.08
COL12A1-203ENST00000416123 FAM9BQ8IZU0 186 aa14.53□□□□□ -0.08
COL12A1-203ENST00000416123 DDX10Q13206 875 aaKnown RBP14.51□□□□□ -0.09
COL12A1-203ENST00000416123 KCNH8Q96L42 1107 aa14.49□□□□□ -0.09
COL12A1-203ENST00000416123 HIRIP3Q9BW71 556 aaPredicted RBP14.47□□□□□ -0.09
COL12A1-203ENST00000416123 A0A0G2JS52 829 aa14.46□□□□□ -0.09
COL12A1-203ENST00000416123 ZBTB7CA1YPR0 619 aa14.45□□□□□ -0.1
COL12A1-203ENST00000416123 HNRNPUQ00839 825 aaKnown RBP eCLIP14.44□□□□□ -0.1
COL12A1-203ENST00000416123 MTUS2Q5JR59 1369 aa14.44□□□□□ -0.1
COL12A1-203ENST00000416123 FKBP8Q14318 412 aa14.42□□□□□ -0.1
COL12A1-203ENST00000416123 TSPY4P0CV99 314 aa14.41□□□□□ -0.1
COL12A1-203ENST00000416123 TSPY10P0CW01 314 aa14.41□□□□□ -0.1
COL12A1-203ENST00000416123 RRP7BPQ9NSQ0 103 aa14.41□□□□□ -0.1
COL12A1-203ENST00000416123 ANP32AP39687 249 aaKnown RBP14.39□□□□□ -0.11
COL12A1-203ENST00000416123 TMC1Q8TDI8 760 aa14.38□□□□□ -0.11
COL12A1-203ENST00000416123 C14orf37Q86TY3 774 aa14.38□□□□□ -0.11
COL12A1-203ENST00000416123 ACIN1Q9UKV3 1341 aaKnown RBP14.36□□□□□ -0.11
COL12A1-203ENST00000416123 HSP90AA1P07900 732 aaKnown RBP14.35□□□□□ -0.11
COL12A1-203ENST00000416123 WDR43Q15061 677 aaKnown RBP eCLIP14.33□□□□□ -0.11
COL12A1-203ENST00000416123 ARID4BQ4LE39 1312 aaPredicted RBP14.33□□□□□ -0.12
COL12A1-203ENST00000416123 SENP3-EIF4A1A0A087X0R7 540 aa14.33□□□□□ -0.12
COL12A1-203ENST00000416123 ERCC6Q03468 1493 aa14.32□□□□□ -0.12
COL12A1-203ENST00000416123 BAZ1BQ9UIG0 1483 aaKnown RBP14.32□□□□□ -0.12
COL12A1-203ENST00000416123 CLIP1P30622 1438 aa14.32□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms