RNA–Protein interactions for RNA: ENST00000415138.1

LINC01888-201, Transcript of long intergenic non-protein coding RNA 1888, humanhuman

TSL 2

Gene LINC01888, Length 436 nt, Biotype antisense RNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01888-201ENST00000415138 AEBP2Q6ZN18 517 aaPredicted RBP29.26■■■□□ 2.27
LINC01888-201ENST00000415138 CHIC1Q5VXU3 224 aa28.06■■■□□ 2.08
LINC01888-201ENST00000415138 SENP3Q9H4L4 574 aaPredicted RBP25■■□□□ 1.59
LINC01888-201ENST00000415138 PHF23Q9BUL5 403 aaPredicted RBP24.7■■□□□ 1.54
LINC01888-201ENST00000415138 FOXD1Q16676 465 aa23.24■■□□□ 1.31
LINC01888-201ENST00000415138 PLPPR3Q6T4P5 718 aa22.56■■□□□ 1.2
LINC01888-201ENST00000415138 PPP6R1Q9UPN7 881 aa21.88■■□□□ 1.09
LINC01888-201ENST00000415138 NISCHQ9Y2I1 1504 aa21.88■■□□□ 1.09
LINC01888-201ENST00000415138 ADRA2BP18089 450 aa21.87■■□□□ 1.09
LINC01888-201ENST00000415138 PIAS4Q8N2W9 510 aaPredicted RBP21.82■■□□□ 1.08
LINC01888-201ENST00000415138 MSH5O43196 834 aa21.71■■□□□ 1.07
LINC01888-201ENST00000415138 POTEDQ86YR6 584 aa20.75■□□□□ 0.91
LINC01888-201ENST00000415138 SCAF1Q9H7N4 1312 aaKnown RBP20.09■□□□□ 0.81
LINC01888-201ENST00000415138 MAPK8IP2Q13387 824 aaPredicted RBP20■□□□□ 0.79
LINC01888-201ENST00000415138 DMRT2Q9Y5R5 561 aa19.84■□□□□ 0.77
LINC01888-201ENST00000415138 PPP4R3CPQ6ZMV5 832 aa19.8■□□□□ 0.76
LINC01888-201ENST00000415138 CCDC180Q9P1Z9 1646 aa19.43■□□□□ 0.7
LINC01888-201ENST00000415138 CNKSR2Q8WXI2 1034 aa19.38■□□□□ 0.69
LINC01888-201ENST00000415138 HOXD11P31277 338 aaPredicted RBP19.19■□□□□ 0.66
LINC01888-201ENST00000415138 NCBP3Q53F19 620 aaKnown RBP19.17■□□□□ 0.66
LINC01888-201ENST00000415138 RNF216Q9NWF9 866 aaPredicted RBP19.13■□□□□ 0.65
LINC01888-201ENST00000415138 DCAF8L1A6NGE4 600 aa19.11■□□□□ 0.65
LINC01888-201ENST00000415138 ABCC9O60706 1549 aa18.81■□□□□ 0.6
LINC01888-201ENST00000415138 NPM3O75607 178 aaKnown RBP18.81■□□□□ 0.6
LINC01888-201ENST00000415138 KCNA4P22459 653 aa18.66■□□□□ 0.58
LINC01888-201ENST00000415138 CACNB1Q02641 598 aaPredicted RBP18.52■□□□□ 0.56
LINC01888-201ENST00000415138 RNF39Q9H2S5 420 aa18.5■□□□□ 0.55
LINC01888-201ENST00000415138 DNAJC5BQ9UF47 199 aa18.48■□□□□ 0.55
LINC01888-201ENST00000415138 DCAF8L2P0C7V8 631 aa18.39■□□□□ 0.53
LINC01888-201ENST00000415138 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.37■□□□□ 0.53
LINC01888-201ENST00000415138 C1QBPQ07021 282 aaKnown RBP18.28■□□□□ 0.52
LINC01888-201ENST00000415138 ZCCHC6Q5VYS8 1495 aaKnown RBP18.23■□□□□ 0.51
LINC01888-201ENST00000415138 RB1CC1Q8TDY2 1594 aa18.22■□□□□ 0.51
LINC01888-201ENST00000415138 NACADO15069 1562 aa18.21■□□□□ 0.51
LINC01888-201ENST00000415138 MYO15BQ96JP2 1530 aa18.1■□□□□ 0.49
LINC01888-201ENST00000415138 DCAF1Q9Y4B6 1507 aa18.09■□□□□ 0.49
LINC01888-201ENST00000415138 U3KPZ7 1027 aaPredicted RBP17.93■□□□□ 0.46
LINC01888-201ENST00000415138 SLC4A2P04920 1241 aa17.88■□□□□ 0.45
LINC01888-201ENST00000415138 UNC13AQ9UPW8 1703 aa17.82■□□□□ 0.44
LINC01888-201ENST00000415138 SCRIBQ14160 1630 aa17.75■□□□□ 0.43
LINC01888-201ENST00000415138 SLC4A1APQ9BWU0 796 aaKnown RBP17.7■□□□□ 0.42
LINC01888-201ENST00000415138 CAPN15O75808 1086 aa17.64■□□□□ 0.41
LINC01888-201ENST00000415138 PABPN1Q86U42 306 aaKnown RBP eCLIP17.62■□□□□ 0.41
LINC01888-201ENST00000415138 SPINK5Q9NQ38 1064 aaPredicted RBP17.61■□□□□ 0.41
LINC01888-201ENST00000415138 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.58■□□□□ 0.4
LINC01888-201ENST00000415138 HNRNPUL2Q1KMD3 747 aaKnown RBP17.58■□□□□ 0.4
LINC01888-201ENST00000415138 APLP2Q06481 763 aa17.57■□□□□ 0.4
LINC01888-201ENST00000415138 BICRAQ9NZM4 1560 aa17.54■□□□□ 0.4
LINC01888-201ENST00000415138 SAMD1Q6SPF0 538 aaPredicted RBP17.47■□□□□ 0.39
LINC01888-201ENST00000415138 SHROOM4Q9ULL8 1493 aa17.46■□□□□ 0.39
LINC01888-201ENST00000415138 MYCNP04198 464 aaPredicted RBP17.43■□□□□ 0.38
LINC01888-201ENST00000415138 TRHP20396 242 aaPredicted RBP17.41■□□□□ 0.38
LINC01888-201ENST00000415138 DSG3P32926 999 aa17.41■□□□□ 0.38
LINC01888-201ENST00000415138 ZNF219Q9P2Y4 722 aaPredicted RBP17.37■□□□□ 0.37
LINC01888-201ENST00000415138 FOXD4L1Q9NU39 408 aa17.36■□□□□ 0.37
LINC01888-201ENST00000415138 ABCB7O75027 752 aa17.22■□□□□ 0.35
LINC01888-201ENST00000415138 EIF4G1Q04637 1599 aaKnown RBP17.12■□□□□ 0.33
LINC01888-201ENST00000415138 ZBTB22O15209 634 aa17.1■□□□□ 0.33
LINC01888-201ENST00000415138 CC2D2AQ9P2K1 1620 aa17.03■□□□□ 0.32
LINC01888-201ENST00000415138 CECR2Q9BXF3 1484 aa16.99■□□□□ 0.31
LINC01888-201ENST00000415138 BAZ1AQ9NRL2 1556 aaPredicted RBP16.99■□□□□ 0.31
LINC01888-201ENST00000415138 POLA2Q14181 598 aa16.97■□□□□ 0.31
LINC01888-201ENST00000415138 SMARCA4P51532 1647 aa16.96■□□□□ 0.31
LINC01888-201ENST00000415138 ATF5Q9Y2D1 282 aaPredicted RBP16.95■□□□□ 0.3
LINC01888-201ENST00000415138 SMARCA2P51531 1590 aa16.85■□□□□ 0.29
LINC01888-201ENST00000415138 MROH2BQ7Z745 1585 aa16.85■□□□□ 0.29
LINC01888-201ENST00000415138 ATXN8OSP0DMR3 200 aa16.81■□□□□ 0.28
LINC01888-201ENST00000415138 ATAD2BQ9ULI0 1458 aa16.79■□□□□ 0.28
LINC01888-201ENST00000415138 PELP1Q8IZL8 1130 aaKnown RBP16.77■□□□□ 0.28
LINC01888-201ENST00000415138 NCAPD3P42695 1498 aa16.75■□□□□ 0.27
LINC01888-201ENST00000415138 PEG3Q9GZU2 1588 aa16.75■□□□□ 0.27
LINC01888-201ENST00000415138 WIZO95785 1651 aa16.75■□□□□ 0.27
LINC01888-201ENST00000415138 BAZ1BQ9UIG0 1483 aaKnown RBP16.73■□□□□ 0.27
LINC01888-201ENST00000415138 RSF1Q96T23 1441 aaPredicted RBP16.71■□□□□ 0.27
LINC01888-201ENST00000415138 MYT1Q01538 1121 aa16.71■□□□□ 0.27
LINC01888-201ENST00000415138 HMGXB3Q12766 1538 aa16.7■□□□□ 0.26
LINC01888-201ENST00000415138 RBM42Q9BTD8 480 aaKnown RBP16.67■□□□□ 0.26
LINC01888-201ENST00000415138 ZBTB12Q9Y330 459 aaPredicted RBP16.67■□□□□ 0.26
LINC01888-201ENST00000415138 SUPT5HO00267 1087 aaKnown RBP16.58■□□□□ 0.24
LINC01888-201ENST00000415138 CSRNP3Q8WYN3 585 aa16.56■□□□□ 0.24
LINC01888-201ENST00000415138 TOP2AP11388 1531 aaKnown RBP16.55■□□□□ 0.24
LINC01888-201ENST00000415138 EHMT2Q96KQ7 1210 aa16.53■□□□□ 0.24
LINC01888-201ENST00000415138 OSCARQ8IYS5 282 aa16.39■□□□□ 0.21
LINC01888-201ENST00000415138 FBLN2P98095 1184 aa16.38■□□□□ 0.21
LINC01888-201ENST00000415138 CCDC88BA6NC98 1476 aa16.35■□□□□ 0.21
LINC01888-201ENST00000415138 LAMC3Q9Y6N6 1575 aa16.34■□□□□ 0.21
LINC01888-201ENST00000415138 POTEHQ6S545 545 aa16.33■□□□□ 0.2
LINC01888-201ENST00000415138 AKT1S1Q96B36 256 aa16.31■□□□□ 0.2
LINC01888-201ENST00000415138 CADPSQ9ULU8 1353 aa16.3■□□□□ 0.2
LINC01888-201ENST00000415138 NESP48681 1621 aa16.3■□□□□ 0.2
LINC01888-201ENST00000415138 ERCC6Q03468 1493 aa16.27■□□□□ 0.19
LINC01888-201ENST00000415138 PRDM2Q13029 1718 aa16.25■□□□□ 0.19
LINC01888-201ENST00000415138 PDS5BQ9NTI5 1447 aa16.24■□□□□ 0.19
LINC01888-201ENST00000415138 CFTRP13569 1480 aa16.22■□□□□ 0.19
LINC01888-201ENST00000415138 TTBK1Q5TCY1 1321 aaPredicted RBP16.21■□□□□ 0.19
LINC01888-201ENST00000415138 KIF21AQ7Z4S6 1674 aa16.19■□□□□ 0.18
LINC01888-201ENST00000415138 MKRN4PQ13434 485 aaPredicted RBP16.18■□□□□ 0.18
LINC01888-201ENST00000415138 CHRDL2Q6WN34 429 aa16.18■□□□□ 0.18
LINC01888-201ENST00000415138 SPDYE2BA6NHP3 402 aa16.15■□□□□ 0.18
LINC01888-201ENST00000415138 SPDYE6P0CI01 402 aa16.15■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms