RNA–Protein interactions for RNA: ENST00000398460.3

MEG3-201, Transcript of maternally expressed 3, humanhuman

TSL 2

Gene MEG3, Length 3,382 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MEG3-201ENST00000398460 NISCHQ9Y2I1 1504 aa24.72■■□□□ 1.55
MEG3-201ENST00000398460 SHROOM4Q9ULL8 1493 aa21.42■■□□□ 1.02
MEG3-201ENST00000398460 DCAF8L2P0C7V8 631 aa21.08■□□□□ 0.97
MEG3-201ENST00000398460 SUPT5HO00267 1087 aaKnown RBP21.07■□□□□ 0.96
MEG3-201ENST00000398460 CCDC180Q9P1Z9 1646 aa20.86■□□□□ 0.93
MEG3-201ENST00000398460 ZCCHC6Q5VYS8 1495 aaKnown RBP20.85■□□□□ 0.93
MEG3-201ENST00000398460 CHIC1Q5VXU3 224 aa20.26■□□□□ 0.83
MEG3-201ENST00000398460 DCAF1Q9Y4B6 1507 aa20.15■□□□□ 0.82
MEG3-201ENST00000398460 HRCP23327 699 aa20.04■□□□□ 0.8
MEG3-201ENST00000398460 MYO15BQ96JP2 1530 aa20■□□□□ 0.79
MEG3-201ENST00000398460 PPARGC1BQ86YN6 1023 aaKnown RBP19.97■□□□□ 0.79
MEG3-201ENST00000398460 PCGF6Q9BYE7 350 aa19.93■□□□□ 0.78
MEG3-201ENST00000398460 SCRIBQ14160 1630 aa19.78■□□□□ 0.76
MEG3-201ENST00000398460 LOC105371045A0A1W2PR82 267 aa19.75■□□□□ 0.75
MEG3-201ENST00000398460 ABCC9O60706 1549 aa19.71■□□□□ 0.75
MEG3-201ENST00000398460 RSF1Q96T23 1441 aaPredicted RBP19.61■□□□□ 0.73
MEG3-201ENST00000398460 TRIM41Q8WV44 630 aa19.59■□□□□ 0.73
MEG3-201ENST00000398460 FAM9AQ8IZU1 332 aaPredicted RBP19.52■□□□□ 0.72
MEG3-201ENST00000398460 EHMT2Q96KQ7 1210 aa19.46■□□□□ 0.71
MEG3-201ENST00000398460 NACADO15069 1562 aa19.43■□□□□ 0.7
MEG3-201ENST00000398460 CECR2Q9BXF3 1484 aa19.35■□□□□ 0.69
MEG3-201ENST00000398460 RB1CC1Q8TDY2 1594 aa19.34■□□□□ 0.69
MEG3-201ENST00000398460 TRIM26Q12899 539 aaPredicted RBP19.32■□□□□ 0.68
MEG3-201ENST00000398460 MROH2BQ7Z745 1585 aa19.24■□□□□ 0.67
MEG3-201ENST00000398460 PELP1Q8IZL8 1130 aaKnown RBP19.15■□□□□ 0.66
MEG3-201ENST00000398460 WIZO95785 1651 aa19.09■□□□□ 0.65
MEG3-201ENST00000398460 SCAF1Q9H7N4 1312 aaKnown RBP19.08■□□□□ 0.65
MEG3-201ENST00000398460 BAZ1AQ9NRL2 1556 aaPredicted RBP19.01■□□□□ 0.63
MEG3-201ENST00000398460 PABPN1Q86U42 306 aaKnown RBP eCLIP18.97■□□□□ 0.63
MEG3-201ENST00000398460 ZEB1P37275 1124 aaPredicted RBP18.93■□□□□ 0.62
MEG3-201ENST00000398460 TTBK1Q5TCY1 1321 aaPredicted RBP18.81■□□□□ 0.6
MEG3-201ENST00000398460 TOP2AP11388 1531 aaKnown RBP18.79■□□□□ 0.6
MEG3-201ENST00000398460 CCDC88BA6NC98 1476 aa18.79■□□□□ 0.6
MEG3-201ENST00000398460 SMARCA4P51532 1647 aa18.79■□□□□ 0.6
MEG3-201ENST00000398460 ABCC8Q09428 1581 aa18.75■□□□□ 0.59
MEG3-201ENST00000398460 UBTFP17480 764 aaKnown RBP18.75■□□□□ 0.59
MEG3-201ENST00000398460 SMARCA2P51531 1590 aa18.67■□□□□ 0.58
MEG3-201ENST00000398460 CCER1Q8TC90 406 aaPredicted RBP18.66■□□□□ 0.58
MEG3-201ENST00000398460 CSRNP3Q8WYN3 585 aa18.65■□□□□ 0.58
MEG3-201ENST00000398460 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.63■□□□□ 0.57
MEG3-201ENST00000398460 SOGA1O94964 1423 aa18.62■□□□□ 0.57
MEG3-201ENST00000398460 EIF4G1Q04637 1599 aaKnown RBP18.62■□□□□ 0.57
MEG3-201ENST00000398460 UNC13AQ9UPW8 1703 aa18.61■□□□□ 0.57
MEG3-201ENST00000398460 NEUROD1Q13562 356 aa18.61■□□□□ 0.57
MEG3-201ENST00000398460 GTF3C3Q9Y5Q9 886 aa18.55■□□□□ 0.56
MEG3-201ENST00000398460 CEP162Q5TB80 1403 aa18.55■□□□□ 0.56
MEG3-201ENST00000398460 ACIN1Q9UKV3 1341 aaKnown RBP18.54■□□□□ 0.56
MEG3-201ENST00000398460 WRNQ14191 1432 aaPredicted RBP eCLIP18.51■□□□□ 0.55
MEG3-201ENST00000398460 EEA1Q15075 1411 aa18.51■□□□□ 0.55
MEG3-201ENST00000398460 BICRAQ9NZM4 1560 aa18.5■□□□□ 0.55
MEG3-201ENST00000398460 TNIKQ9UKE5 1360 aa18.5■□□□□ 0.55
MEG3-201ENST00000398460 RANGAP1P46060 587 aaPredicted RBP18.48■□□□□ 0.55
MEG3-201ENST00000398460 RUSC2Q8N2Y8 1516 aa18.48■□□□□ 0.55
MEG3-201ENST00000398460 BAZ1BQ9UIG0 1483 aaKnown RBP18.43■□□□□ 0.54
MEG3-201ENST00000398460 GOLGA3Q08378 1498 aa18.41■□□□□ 0.54
MEG3-201ENST00000398460 APLP2Q06481 763 aa18.4■□□□□ 0.54
MEG3-201ENST00000398460 ATAD2BQ9ULI0 1458 aa18.4■□□□□ 0.54
MEG3-201ENST00000398460 YTHDC1Q96MU7 727 aaKnown RBP18.33■□□□□ 0.52
MEG3-201ENST00000398460 CENPBP07199 599 aaPredicted RBP18.32■□□□□ 0.52
MEG3-201ENST00000398460 DIEXFQ68CQ4 756 aaKnown RBP18.31■□□□□ 0.52
MEG3-201ENST00000398460 PEG3Q9GZU2 1588 aa18.31■□□□□ 0.52
MEG3-201ENST00000398460 CEP164Q9UPV0 1460 aa18.3■□□□□ 0.52
MEG3-201ENST00000398460 MYT1Q01538 1121 aa18.3■□□□□ 0.52
MEG3-201ENST00000398460 HNRNPUL2Q1KMD3 747 aaKnown RBP18.3■□□□□ 0.52
MEG3-201ENST00000398460 CLIP1P30622 1438 aa18.26■□□□□ 0.51
MEG3-201ENST00000398460 SYNJ1O43426 1573 aa18.26■□□□□ 0.51
MEG3-201ENST00000398460 RAPGEF2Q9Y4G8 1499 aa18.15■□□□□ 0.5
MEG3-201ENST00000398460 VPS8Q8N3P4 1428 aa18.1■□□□□ 0.49
MEG3-201ENST00000398460 KIF21BO75037 1637 aa18.1■□□□□ 0.49
MEG3-201ENST00000398460 ZNF316A6NFI3 1004 aaPredicted RBP18.02■□□□□ 0.48
MEG3-201ENST00000398460 NCAPD3P42695 1498 aa18.02■□□□□ 0.48
MEG3-201ENST00000398460 TOP2BQ02880 1626 aa18.01■□□□□ 0.47
MEG3-201ENST00000398460 KIF27Q86VH2 1401 aa17.98■□□□□ 0.47
MEG3-201ENST00000398460 HMGXB3Q12766 1538 aa17.94■□□□□ 0.46
MEG3-201ENST00000398460 ITGAEP38570 1179 aa17.9■□□□□ 0.46
MEG3-201ENST00000398460 PRXQ9BXM0 1461 aa17.9■□□□□ 0.46
MEG3-201ENST00000398460 CUX1P39880 1505 aa17.89■□□□□ 0.45
MEG3-201ENST00000398460 MIER1Q8N108 512 aa17.88■□□□□ 0.45
MEG3-201ENST00000398460 KANK4Q5T7N3 995 aaPredicted RBP17.88■□□□□ 0.45
MEG3-201ENST00000398460 CFTRP13569 1480 aa17.87■□□□□ 0.45
MEG3-201ENST00000398460 BIVM-ERCC5R4GMW8 1640 aa17.87■□□□□ 0.45
MEG3-201ENST00000398460 ERICH3Q5RHP9 1530 aa17.85■□□□□ 0.45
MEG3-201ENST00000398460 ATP1B4Q9UN42 357 aaPredicted RBP17.84■□□□□ 0.45
MEG3-201ENST00000398460 CUX2O14529 1486 aa17.82■□□□□ 0.44
MEG3-201ENST00000398460 ARAP1Q96P48 1450 aa17.8■□□□□ 0.44
MEG3-201ENST00000398460 CADPSQ9ULU8 1353 aa17.78■□□□□ 0.44
MEG3-201ENST00000398460 P3H3Q8IVL6 736 aa17.75■□□□□ 0.43
MEG3-201ENST00000398460 CARMIL1Q5VZK9 1371 aa17.73■□□□□ 0.43
MEG3-201ENST00000398460 IGF1RP08069 1367 aa17.72■□□□□ 0.43
MEG3-201ENST00000398460 ARHGAP35Q9NRY4 1499 aa17.69■□□□□ 0.42
MEG3-201ENST00000398460 CCNB3Q8WWL7 1395 aa17.69■□□□□ 0.42
MEG3-201ENST00000398460 CLSPNQ9HAW4 1339 aa17.67■□□□□ 0.42
MEG3-201ENST00000398460 DHX57Q6P158 1386 aaKnown RBP17.67■□□□□ 0.42
MEG3-201ENST00000398460 FAM50AQ14320 339 aaKnown RBP17.67■□□□□ 0.42
MEG3-201ENST00000398460 FGD5Q6ZNL6 1462 aa17.67■□□□□ 0.42
MEG3-201ENST00000398460 RRBP1Q9P2E9 1410 aaKnown RBP17.6■□□□□ 0.41
MEG3-201ENST00000398460 FANCD2Q9BXW9 1451 aa17.6■□□□□ 0.41
MEG3-201ENST00000398460 CC2D2AQ9P2K1 1620 aa17.57■□□□□ 0.4
MEG3-201ENST00000398460 FHAD1B1AJZ9 1412 aa17.54■□□□□ 0.4
MEG3-201ENST00000398460 RAD54L2Q9Y4B4 1467 aa17.53■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 62.1 ms