RNA–Protein interactions for RNA: ENST00000398317.2

NIFKP1-201, Transcript of nucleolar protein interacting with the FHA domain of MKI67 pseudogene 1, humanhuman

BASIC

Gene NIFKP1, Length 889 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIFKP1-201ENST00000398317 AEBP2Q6ZN18 517 aaPredicted RBP28.93■■■□□ 2.22
NIFKP1-201ENST00000398317 CHIC1Q5VXU3 224 aa27.93■■■□□ 2.06
NIFKP1-201ENST00000398317 PHF23Q9BUL5 403 aaPredicted RBP24.62■■□□□ 1.53
NIFKP1-201ENST00000398317 NISCHQ9Y2I1 1504 aa24.53■■□□□ 1.52
NIFKP1-201ENST00000398317 SENP3Q9H4L4 574 aaPredicted RBP24.44■■□□□ 1.5
NIFKP1-201ENST00000398317 FOXD1Q16676 465 aa22.81■■□□□ 1.24
NIFKP1-201ENST00000398317 PLPPR3Q6T4P5 718 aa22.55■■□□□ 1.2
NIFKP1-201ENST00000398317 ABCC9O60706 1549 aa22.05■■□□□ 1.12
NIFKP1-201ENST00000398317 CCDC180Q9P1Z9 1646 aa21.99■■□□□ 1.11
NIFKP1-201ENST00000398317 PPP6R1Q9UPN7 881 aa21.83■■□□□ 1.09
NIFKP1-201ENST00000398317 ADRA2BP18089 450 aa21.82■■□□□ 1.08
NIFKP1-201ENST00000398317 PIAS4Q8N2W9 510 aaPredicted RBP21.47■■□□□ 1.03
NIFKP1-201ENST00000398317 MSH5O43196 834 aa21■□□□□ 0.95
NIFKP1-201ENST00000398317 RB1CC1Q8TDY2 1594 aa20.94■□□□□ 0.94
NIFKP1-201ENST00000398317 DCAF8L2P0C7V8 631 aa20.79■□□□□ 0.92
NIFKP1-201ENST00000398317 NACADO15069 1562 aa20.79■□□□□ 0.92
NIFKP1-201ENST00000398317 DNAJC5BQ9UF47 199 aa20.71■□□□□ 0.91
NIFKP1-201ENST00000398317 PABPN1Q86U42 306 aaKnown RBP eCLIP20.56■□□□□ 0.88
NIFKP1-201ENST00000398317 UNC13AQ9UPW8 1703 aa20.53■□□□□ 0.88
NIFKP1-201ENST00000398317 MYO15BQ96JP2 1530 aa20.46■□□□□ 0.87
NIFKP1-201ENST00000398317 BICRAQ9NZM4 1560 aa20.36■□□□□ 0.85
NIFKP1-201ENST00000398317 ZCCHC6Q5VYS8 1495 aaKnown RBP20.32■□□□□ 0.84
NIFKP1-201ENST00000398317 DCAF1Q9Y4B6 1507 aa20.22■□□□□ 0.83
NIFKP1-201ENST00000398317 SCRIBQ14160 1630 aa20.1■□□□□ 0.81
NIFKP1-201ENST00000398317 SHROOM4Q9ULL8 1493 aa19.99■□□□□ 0.79
NIFKP1-201ENST00000398317 PPP4R3CPQ6ZMV5 832 aa19.91■□□□□ 0.78
NIFKP1-201ENST00000398317 CC2D2AQ9P2K1 1620 aa19.91■□□□□ 0.78
NIFKP1-201ENST00000398317 MAPK8IP2Q13387 824 aaPredicted RBP19.88■□□□□ 0.77
NIFKP1-201ENST00000398317 EIF4G1Q04637 1599 aaKnown RBP19.85■□□□□ 0.77
NIFKP1-201ENST00000398317 CECR2Q9BXF3 1484 aa19.84■□□□□ 0.77
NIFKP1-201ENST00000398317 SCAF1Q9H7N4 1312 aaKnown RBP19.76■□□□□ 0.75
NIFKP1-201ENST00000398317 POTEDQ86YR6 584 aa19.63■□□□□ 0.73
NIFKP1-201ENST00000398317 DMRT2Q9Y5R5 561 aa19.49■□□□□ 0.71
NIFKP1-201ENST00000398317 CNKSR2Q8WXI2 1034 aa19.33■□□□□ 0.68
NIFKP1-201ENST00000398317 KCNA4P22459 653 aa19.27■□□□□ 0.68
NIFKP1-201ENST00000398317 NCBP3Q53F19 620 aaKnown RBP19.22■□□□□ 0.67
NIFKP1-201ENST00000398317 NCAPD3P42695 1498 aa19.19■□□□□ 0.66
NIFKP1-201ENST00000398317 ATAD2BQ9ULI0 1458 aa19.16■□□□□ 0.66
NIFKP1-201ENST00000398317 SMARCA4P51532 1647 aa19.14■□□□□ 0.66
NIFKP1-201ENST00000398317 SMARCA2P51531 1590 aa19.09■□□□□ 0.65
NIFKP1-201ENST00000398317 NPM3O75607 178 aaKnown RBP19.06■□□□□ 0.64
NIFKP1-201ENST00000398317 HMGXB3Q12766 1538 aa19.05■□□□□ 0.64
NIFKP1-201ENST00000398317 BAZ1AQ9NRL2 1556 aaPredicted RBP19.02■□□□□ 0.64
NIFKP1-201ENST00000398317 ERCC6Q03468 1493 aa19.02■□□□□ 0.63
NIFKP1-201ENST00000398317 RNF216Q9NWF9 866 aaPredicted RBP18.99■□□□□ 0.63
NIFKP1-201ENST00000398317 HOXD11P31277 338 aaPredicted RBP18.98■□□□□ 0.63
NIFKP1-201ENST00000398317 BAZ1BQ9UIG0 1483 aaKnown RBP18.97■□□□□ 0.63
NIFKP1-201ENST00000398317 DNAJC5Q9H3Z4 198 aa18.97■□□□□ 0.63
NIFKP1-201ENST00000398317 NESP48681 1621 aa18.95■□□□□ 0.62
NIFKP1-201ENST00000398317 CUX2O14529 1486 aa18.95■□□□□ 0.62
NIFKP1-201ENST00000398317 MROH2BQ7Z745 1585 aa18.93■□□□□ 0.62
NIFKP1-201ENST00000398317 PEG3Q9GZU2 1588 aa18.92■□□□□ 0.62
NIFKP1-201ENST00000398317 DCAF8L1A6NGE4 600 aa18.82■□□□□ 0.6
NIFKP1-201ENST00000398317 LAMC3Q9Y6N6 1575 aa18.76■□□□□ 0.59
NIFKP1-201ENST00000398317 WIZO95785 1651 aa18.73■□□□□ 0.59
NIFKP1-201ENST00000398317 THOC2Q8NI27 1593 aaKnown RBP18.72■□□□□ 0.59
NIFKP1-201ENST00000398317 KIF21AQ7Z4S6 1674 aa18.71■□□□□ 0.59
NIFKP1-201ENST00000398317 PDS5BQ9NTI5 1447 aa18.66■□□□□ 0.58
NIFKP1-201ENST00000398317 CADPSQ9ULU8 1353 aa18.63■□□□□ 0.57
NIFKP1-201ENST00000398317 RSF1Q96T23 1441 aaPredicted RBP18.52■□□□□ 0.56
NIFKP1-201ENST00000398317 MRC2Q9UBG0 1479 aa18.51■□□□□ 0.55
NIFKP1-201ENST00000398317 WDR62O43379 1518 aa18.45■□□□□ 0.54
NIFKP1-201ENST00000398317 CEP164Q9UPV0 1460 aa18.44■□□□□ 0.54
NIFKP1-201ENST00000398317 TOP2AP11388 1531 aaKnown RBP18.44■□□□□ 0.54
NIFKP1-201ENST00000398317 FANCD2Q9BXW9 1451 aa18.42■□□□□ 0.54
NIFKP1-201ENST00000398317 CFTRP13569 1480 aa18.4■□□□□ 0.54
NIFKP1-201ENST00000398317 URB2Q14146 1524 aaKnown RBP18.28■□□□□ 0.52
NIFKP1-201ENST00000398317 SLC4A1APQ9BWU0 796 aaKnown RBP18.26■□□□□ 0.51
NIFKP1-201ENST00000398317 PRDM2Q13029 1718 aa18.26■□□□□ 0.51
NIFKP1-201ENST00000398317 CCDC88BA6NC98 1476 aa18.26■□□□□ 0.51
NIFKP1-201ENST00000398317 TRIM41Q8WV44 630 aa18.19■□□□□ 0.5
NIFKP1-201ENST00000398317 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.16■□□□□ 0.5
NIFKP1-201ENST00000398317 OSCARQ8IYS5 282 aa18.12■□□□□ 0.49
NIFKP1-201ENST00000398317 TOPBP1Q92547 1522 aa18.08■□□□□ 0.49
NIFKP1-201ENST00000398317 ZNF608Q9ULD9 1512 aaPredicted RBP18.07■□□□□ 0.48
NIFKP1-201ENST00000398317 SLC4A2P04920 1241 aa18.06■□□□□ 0.48
NIFKP1-201ENST00000398317 IFT140Q96RY7 1462 aa18.06■□□□□ 0.48
NIFKP1-201ENST00000398317 RNF39Q9H2S5 420 aa18.02■□□□□ 0.48
NIFKP1-201ENST00000398317 ABCC8Q09428 1581 aa18■□□□□ 0.47
NIFKP1-201ENST00000398317 DNMBPQ6XZF7 1577 aa18■□□□□ 0.47
NIFKP1-201ENST00000398317 EIF4G3O43432 1585 aaKnown RBP17.95■□□□□ 0.46
NIFKP1-201ENST00000398317 TARBP1Q13395 1621 aaKnown RBP17.92■□□□□ 0.46
NIFKP1-201ENST00000398317 AQRO60306 1485 aaKnown RBP eCLIP17.91■□□□□ 0.46
NIFKP1-201ENST00000398317 RIMBP3CA6NJZ7 1639 aa17.9■□□□□ 0.46
NIFKP1-201ENST00000398317 RIMBP3BA6NNM3 1639 aa17.9■□□□□ 0.46
NIFKP1-201ENST00000398317 RIMBP3Q9UFD9 1639 aa17.9■□□□□ 0.46
NIFKP1-201ENST00000398317 POLA1P09884 1462 aaPredicted RBP17.89■□□□□ 0.45
NIFKP1-201ENST00000398317 U3KPZ7 1027 aaPredicted RBP17.87■□□□□ 0.45
NIFKP1-201ENST00000398317 RAD54L2Q9Y4B4 1467 aa17.86■□□□□ 0.45
NIFKP1-201ENST00000398317 CHD1O14646 1710 aa17.85■□□□□ 0.45
NIFKP1-201ENST00000398317 ARHGEF11O15085 1522 aa17.82■□□□□ 0.44
NIFKP1-201ENST00000398317 SOGA1O94964 1423 aa17.82■□□□□ 0.44
NIFKP1-201ENST00000398317 FBLN2P98095 1184 aa17.81■□□□□ 0.44
NIFKP1-201ENST00000398317 TDRD9Q8NDG6 1382 aaKnown RBP17.79■□□□□ 0.44
NIFKP1-201ENST00000398317 FGD5Q6ZNL6 1462 aa17.79■□□□□ 0.44
NIFKP1-201ENST00000398317 CUX1P39880 1505 aa17.78■□□□□ 0.44
NIFKP1-201ENST00000398317 SUPT5HO00267 1087 aaKnown RBP17.77■□□□□ 0.44
NIFKP1-201ENST00000398317 CACNB1Q02641 598 aaPredicted RBP17.77■□□□□ 0.44
NIFKP1-201ENST00000398317 ZBTB22O15209 634 aa17.75■□□□□ 0.43
NIFKP1-201ENST00000398317 C1QBPQ07021 282 aaKnown RBP17.73■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 10.2 ms