RNA–Protein interactions for RNA: ENST00000396355.5

NDE1-202, Transcript of nudE neurodevelopment protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NDE1, Length 3,936 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NDE1-202ENST00000396355 NISCHQ9Y2I1 1504 aa16.4■□□□□ 0.22
NDE1-202ENST00000396355 ABCC9O60706 1549 aa15.07■□□□□ 0
NDE1-202ENST00000396355 DCAF8L2P0C7V8 631 aa14.87□□□□□ -0.03
NDE1-202ENST00000396355 PELP1Q8IZL8 1130 aaKnown RBP14.35□□□□□ -0.11
NDE1-202ENST00000396355 PABPN1Q86U42 306 aaKnown RBP eCLIP14.28□□□□□ -0.12
NDE1-202ENST00000396355 DNAJC5BQ9UF47 199 aa14.18□□□□□ -0.14
NDE1-202ENST00000396355 CCDC180Q9P1Z9 1646 aa14.16□□□□□ -0.14
NDE1-202ENST00000396355 MYT1Q01538 1121 aa14.03□□□□□ -0.16
NDE1-202ENST00000396355 SHROOM4Q9ULL8 1493 aa14□□□□□ -0.17
NDE1-202ENST00000396355 RB1CC1Q8TDY2 1594 aa13.93□□□□□ -0.18
NDE1-202ENST00000396355 ZCCHC6Q5VYS8 1495 aaKnown RBP13.9□□□□□ -0.18
NDE1-202ENST00000396355 PPARGC1BQ86YN6 1023 aaKnown RBP13.7□□□□□ -0.22
NDE1-202ENST00000396355 NACADO15069 1562 aa13.7□□□□□ -0.22
NDE1-202ENST00000396355 SUPT5HO00267 1087 aaKnown RBP13.68□□□□□ -0.22
NDE1-202ENST00000396355 PCGF6Q9BYE7 350 aa13.67□□□□□ -0.22
NDE1-202ENST00000396355 HRCP23327 699 aa13.57□□□□□ -0.24
NDE1-202ENST00000396355 CECR2Q9BXF3 1484 aa13.49□□□□□ -0.25
NDE1-202ENST00000396355 DCAF1Q9Y4B6 1507 aa13.43□□□□□ -0.26
NDE1-202ENST00000396355 MYO15BQ96JP2 1530 aa13.42□□□□□ -0.26
NDE1-202ENST00000396355 SCRIBQ14160 1630 aa13.39□□□□□ -0.27
NDE1-202ENST00000396355 CHIC1Q5VXU3 224 aa13.33□□□□□ -0.28
NDE1-202ENST00000396355 SCAF1Q9H7N4 1312 aaKnown RBP13.25□□□□□ -0.29
NDE1-202ENST00000396355 CC2D2AQ9P2K1 1620 aa13.24□□□□□ -0.29
NDE1-202ENST00000396355 DNAJC5Q9H3Z4 198 aa13.23□□□□□ -0.29
NDE1-202ENST00000396355 BICRAQ9NZM4 1560 aa13.22□□□□□ -0.29
NDE1-202ENST00000396355 ERCC6Q03468 1493 aa13.18□□□□□ -0.3
NDE1-202ENST00000396355 CENPBP07199 599 aaPredicted RBP13.18□□□□□ -0.3
NDE1-202ENST00000396355 EIF4G1Q04637 1599 aaKnown RBP13.15□□□□□ -0.3
NDE1-202ENST00000396355 YTHDC1Q96MU7 727 aaKnown RBP13.15□□□□□ -0.3
NDE1-202ENST00000396355 TRIM41Q8WV44 630 aa13.13□□□□□ -0.31
NDE1-202ENST00000396355 GTF3C3Q9Y5Q9 886 aa13.13□□□□□ -0.31
NDE1-202ENST00000396355 UNC13AQ9UPW8 1703 aa13.12□□□□□ -0.31
NDE1-202ENST00000396355 BCL11AQ9H165 835 aa13.07□□□□□ -0.32
NDE1-202ENST00000396355 TTBK1Q5TCY1 1321 aaPredicted RBP13.03□□□□□ -0.32
NDE1-202ENST00000396355 RSF1Q96T23 1441 aaPredicted RBP12.99□□□□□ -0.33
NDE1-202ENST00000396355 LOC105371045A0A1W2PR82 267 aa12.96□□□□□ -0.33
NDE1-202ENST00000396355 ERICH6Q7L0X2 663 aa12.95□□□□□ -0.34
NDE1-202ENST00000396355 PRKCSHP14314 528 aaPredicted RBP12.9□□□□□ -0.34
NDE1-202ENST00000396355 EHMT2Q96KQ7 1210 aa12.9□□□□□ -0.34
NDE1-202ENST00000396355 ACIN1Q9UKV3 1341 aaKnown RBP12.86□□□□□ -0.35
NDE1-202ENST00000396355 NEUROD1Q13562 356 aa12.84□□□□□ -0.35
NDE1-202ENST00000396355 MROH2BQ7Z745 1585 aa12.79□□□□□ -0.36
NDE1-202ENST00000396355 FAM9AQ8IZU1 332 aaPredicted RBP12.79□□□□□ -0.36
NDE1-202ENST00000396355 ZEB1P37275 1124 aaPredicted RBP12.77□□□□□ -0.37
NDE1-202ENST00000396355 BAZ1BQ9UIG0 1483 aaKnown RBP12.76□□□□□ -0.37
NDE1-202ENST00000396355 WIZO95785 1651 aa12.74□□□□□ -0.37
NDE1-202ENST00000396355 CUX2O14529 1486 aa12.73□□□□□ -0.37
NDE1-202ENST00000396355 NESP48681 1621 aa12.73□□□□□ -0.37
NDE1-202ENST00000396355 FBLN2P98095 1184 aa12.72□□□□□ -0.37
NDE1-202ENST00000396355 ATAD2BQ9ULI0 1458 aa12.71□□□□□ -0.37
NDE1-202ENST00000396355 NCAPD3P42695 1498 aa12.71□□□□□ -0.38
NDE1-202ENST00000396355 TRHP20396 242 aaPredicted RBP12.7□□□□□ -0.38
NDE1-202ENST00000396355 PDS5BQ9NTI5 1447 aa12.7□□□□□ -0.38
NDE1-202ENST00000396355 SMARCA2P51531 1590 aa12.68□□□□□ -0.38
NDE1-202ENST00000396355 OSCARQ8IYS5 282 aa12.67□□□□□ -0.38
NDE1-202ENST00000396355 CCER1Q8TC90 406 aaPredicted RBP12.63□□□□□ -0.39
NDE1-202ENST00000396355 BAZ1AQ9NRL2 1556 aaPredicted RBP12.63□□□□□ -0.39
NDE1-202ENST00000396355 TRIM26Q12899 539 aaPredicted RBP12.62□□□□□ -0.39
NDE1-202ENST00000396355 DIEXFQ68CQ4 756 aaKnown RBP12.58□□□□□ -0.4
NDE1-202ENST00000396355 ANP32EQ9BTT0 268 aa12.56□□□□□ -0.4
NDE1-202ENST00000396355 CADPSQ9ULU8 1353 aa12.55□□□□□ -0.4
NDE1-202ENST00000396355 CYB5RLQ6IPT4 315 aa12.55□□□□□ -0.4
NDE1-202ENST00000396355 EIF5BO60841 1220 aaKnown RBP12.54□□□□□ -0.4
NDE1-202ENST00000396355 BCANQ96GW7 911 aa12.54□□□□□ -0.4
NDE1-202ENST00000396355 AEBP2Q6ZN18 517 aaPredicted RBP12.53□□□□□ -0.4
NDE1-202ENST00000396355 CSRNP3Q8WYN3 585 aa12.51□□□□□ -0.41
NDE1-202ENST00000396355 SMARCA4P51532 1647 aa12.51□□□□□ -0.41
NDE1-202ENST00000396355 TOP2AP11388 1531 aaKnown RBP12.48□□□□□ -0.41
NDE1-202ENST00000396355 ABCC8Q09428 1581 aa12.47□□□□□ -0.41
NDE1-202ENST00000396355 HMGXB3Q12766 1538 aa12.45□□□□□ -0.42
NDE1-202ENST00000396355 CCDC88BA6NC98 1476 aa12.44□□□□□ -0.42
NDE1-202ENST00000396355 CEP164Q9UPV0 1460 aa12.43□□□□□ -0.42
NDE1-202ENST00000396355 MRC2Q9UBG0 1479 aa12.41□□□□□ -0.42
NDE1-202ENST00000396355 CCDC136Q96JN2 1154 aa12.39□□□□□ -0.43
NDE1-202ENST00000396355 LAMC3Q9Y6N6 1575 aa12.39□□□□□ -0.43
NDE1-202ENST00000396355 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.39□□□□□ -0.43
NDE1-202ENST00000396355 FANCD2Q9BXW9 1451 aa12.38□□□□□ -0.43
NDE1-202ENST00000396355 CHMP7Q8WUX9 453 aaPredicted RBP12.37□□□□□ -0.43
NDE1-202ENST00000396355 RTN4Q9NQC3 1192 aaKnown RBP12.33□□□□□ -0.43
NDE1-202ENST00000396355 SOGA1O94964 1423 aa12.32□□□□□ -0.44
NDE1-202ENST00000396355 NEFLP07196 543 aa12.31□□□□□ -0.44
NDE1-202ENST00000396355 ANO8Q9HCE9 1232 aaPredicted RBP12.31□□□□□ -0.44
NDE1-202ENST00000396355 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.3□□□□□ -0.44
NDE1-202ENST00000396355 RUSC2Q8N2Y8 1516 aa12.29□□□□□ -0.44
NDE1-202ENST00000396355 PEG3Q9GZU2 1588 aa12.27□□□□□ -0.45
NDE1-202ENST00000396355 KIF21AQ7Z4S6 1674 aa12.24□□□□□ -0.45
NDE1-202ENST00000396355 CEP162Q5TB80 1403 aa12.24□□□□□ -0.45
NDE1-202ENST00000396355 THOC2Q8NI27 1593 aaKnown RBP12.22□□□□□ -0.45
NDE1-202ENST00000396355 WRNQ14191 1432 aaPredicted RBP eCLIP12.21□□□□□ -0.45
NDE1-202ENST00000396355 NBR1Q14596 966 aa12.21□□□□□ -0.46
NDE1-202ENST00000396355 RTL5Q5HYW3 569 aaPredicted RBP12.2□□□□□ -0.46
NDE1-202ENST00000396355 RANGAP1P46060 587 aaPredicted RBP12.19□□□□□ -0.46
NDE1-202ENST00000396355 SYNJ1O43426 1573 aa12.19□□□□□ -0.46
NDE1-202ENST00000396355 TDRD9Q8NDG6 1382 aaKnown RBP12.19□□□□□ -0.46
NDE1-202ENST00000396355 TNIKQ9UKE5 1360 aa12.17□□□□□ -0.46
NDE1-202ENST00000396355 NPM1P06748 294 aaKnown RBP eCLIP12.17□□□□□ -0.46
NDE1-202ENST00000396355 CFTRP13569 1480 aa12.16□□□□□ -0.46
NDE1-202ENST00000396355 AQRO60306 1485 aaKnown RBP eCLIP12.15□□□□□ -0.468e-7■□□□□ 11.3
NDE1-202ENST00000396355 EEA1Q15075 1411 aa12.14□□□□□ -0.47
NDE1-202ENST00000396355 WDR62O43379 1518 aa12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms