RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 NISCHQ9Y2I1 1504 aa20.55■□□□□ 0.88
COL6A3-205ENST00000392004 DCAF8L2P0C7V8 631 aa20■□□□□ 0.79
COL6A3-205ENST00000392004 SHROOM4Q9ULL8 1493 aa18.7■□□□□ 0.58
COL6A3-205ENST00000392004 SUPT5HO00267 1087 aaKnown RBP18.31■□□□□ 0.52
COL6A3-205ENST00000392004 ABCC9O60706 1549 aa18.26■□□□□ 0.51
COL6A3-205ENST00000392004 PABPN1Q86U42 306 aaKnown RBP eCLIP17.85■□□□□ 0.45
COL6A3-205ENST00000392004 EHMT2Q96KQ7 1210 aa17.62■□□□□ 0.41
COL6A3-205ENST00000392004 FAM9AQ8IZU1 332 aaPredicted RBP17.23■□□□□ 0.35
COL6A3-205ENST00000392004 CCDC180Q9P1Z9 1646 aa17.12■□□□□ 0.33
COL6A3-205ENST00000392004 RANGAP1P46060 587 aaPredicted RBP17.02■□□□□ 0.32
COL6A3-205ENST00000392004 SCRIBQ14160 1630 aa17.02■□□□□ 0.31
COL6A3-205ENST00000392004 ZCCHC6Q5VYS8 1495 aaKnown RBP16.97■□□□□ 0.31
COL6A3-205ENST00000392004 TRIM41Q8WV44 630 aa16.85■□□□□ 0.29
COL6A3-205ENST00000392004 RB1CC1Q8TDY2 1594 aa16.76■□□□□ 0.27
COL6A3-205ENST00000392004 TTBK1Q5TCY1 1321 aaPredicted RBP16.73■□□□□ 0.27
COL6A3-205ENST00000392004 NACADO15069 1562 aa16.59■□□□□ 0.25
COL6A3-205ENST00000392004 ATP1B4Q9UN42 357 aaPredicted RBP16.59■□□□□ 0.25
COL6A3-205ENST00000392004 UBTFP17480 764 aaKnown RBP16.54■□□□□ 0.24
COL6A3-205ENST00000392004 FBLN2P98095 1184 aa16.46■□□□□ 0.22
COL6A3-205ENST00000392004 CECR2Q9BXF3 1484 aa16.42■□□□□ 0.22
COL6A3-205ENST00000392004 CHIC1Q5VXU3 224 aa16.38■□□□□ 0.21
COL6A3-205ENST00000392004 LOC105371045A0A1W2PR82 267 aa16.37■□□□□ 0.21
COL6A3-205ENST00000392004 PPARGC1BQ86YN6 1023 aaKnown RBP16.37■□□□□ 0.21
COL6A3-205ENST00000392004 APLP2Q06481 763 aa16.31■□□□□ 0.2
COL6A3-205ENST00000392004 RSF1Q96T23 1441 aaPredicted RBP16.23■□□□□ 0.19
COL6A3-205ENST00000392004 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.22■□□□□ 0.19
COL6A3-205ENST00000392004 HNRNPUL2Q1KMD3 747 aaKnown RBP16.22■□□□□ 0.19
COL6A3-205ENST00000392004 DCAF1Q9Y4B6 1507 aa16.21■□□□□ 0.19
COL6A3-205ENST00000392004 DNAJC5BQ9UF47 199 aa16.2■□□□□ 0.18
COL6A3-205ENST00000392004 BAZ1BQ9UIG0 1483 aaKnown RBP16.11■□□□□ 0.17
COL6A3-205ENST00000392004 ARID3CA6NKF2 412 aa16.11■□□□□ 0.17
COL6A3-205ENST00000392004 HRCP23327 699 aa16.11■□□□□ 0.17
COL6A3-205ENST00000392004 P3H3Q8IVL6 736 aa16.08■□□□□ 0.16
COL6A3-205ENST00000392004 MROH2BQ7Z745 1585 aa16.07■□□□□ 0.16
COL6A3-205ENST00000392004 ERCC6Q03468 1493 aa15.97■□□□□ 0.15
COL6A3-205ENST00000392004 BAZ1AQ9NRL2 1556 aaPredicted RBP15.96■□□□□ 0.15
COL6A3-205ENST00000392004 MYO15BQ96JP2 1530 aa15.95■□□□□ 0.14
COL6A3-205ENST00000392004 ITGAEP38570 1179 aa15.94■□□□□ 0.14
COL6A3-205ENST00000392004 MYT1LQ9UL68 1186 aa15.92■□□□□ 0.14
COL6A3-205ENST00000392004 PCGF6Q9BYE7 350 aa15.91■□□□□ 0.14
COL6A3-205ENST00000392004 CSRNP3Q8WYN3 585 aa15.85■□□□□ 0.13
COL6A3-205ENST00000392004 CHMP7Q8WUX9 453 aaPredicted RBP15.84■□□□□ 0.13
COL6A3-205ENST00000392004 ATAD2BQ9ULI0 1458 aa15.82■□□□□ 0.12
COL6A3-205ENST00000392004 WIZO95785 1651 aa15.81■□□□□ 0.12
COL6A3-205ENST00000392004 CCDC88BA6NC98 1476 aa15.76■□□□□ 0.11
COL6A3-205ENST00000392004 EIF4G1Q04637 1599 aaKnown RBP15.73■□□□□ 0.11
COL6A3-205ENST00000392004 SMARCA2P51531 1590 aa15.69■□□□□ 0.1
COL6A3-205ENST00000392004 BICRAQ9NZM4 1560 aa15.67■□□□□ 0.1
COL6A3-205ENST00000392004 SMARCA4P51532 1647 aa15.66■□□□□ 0.1
COL6A3-205ENST00000392004 WRNQ14191 1432 aaPredicted RBP eCLIP15.66■□□□□ 0.1
COL6A3-205ENST00000392004 TDRD9Q8NDG6 1382 aaKnown RBP15.66■□□□□ 0.1
COL6A3-205ENST00000392004 CADPSQ9ULU8 1353 aa15.65■□□□□ 0.1
COL6A3-205ENST00000392004 CC2D2AQ9P2K1 1620 aa15.61■□□□□ 0.09
COL6A3-205ENST00000392004 NESP48681 1621 aa15.6■□□□□ 0.09
COL6A3-205ENST00000392004 PDS5BQ9NTI5 1447 aa15.59■□□□□ 0.09
COL6A3-205ENST00000392004 ABCC8Q09428 1581 aa15.57■□□□□ 0.08
COL6A3-205ENST00000392004 FAM50AQ14320 339 aaKnown RBP15.57■□□□□ 0.08
COL6A3-205ENST00000392004 PELP1Q8IZL8 1130 aaKnown RBP15.56■□□□□ 0.08
COL6A3-205ENST00000392004 ZNF777Q9ULD5 760 aaPredicted RBP15.55■□□□□ 0.08
COL6A3-205ENST00000392004 PLPPR3Q6T4P5 718 aa15.52■□□□□ 0.08
COL6A3-205ENST00000392004 KCNH8Q96L42 1107 aa15.5■□□□□ 0.07
COL6A3-205ENST00000392004 NPM1P06748 294 aaKnown RBP eCLIP15.5■□□□□ 0.07
COL6A3-205ENST00000392004 NCAPD3P42695 1498 aa15.5■□□□□ 0.07
COL6A3-205ENST00000392004 SOGA1O94964 1423 aa15.48■□□□□ 0.07
COL6A3-205ENST00000392004 CCER1Q8TC90 406 aaPredicted RBP15.48■□□□□ 0.07
COL6A3-205ENST00000392004 TOP2AP11388 1531 aaKnown RBP15.48■□□□□ 0.07
COL6A3-205ENST00000392004 CUX2O14529 1486 aa15.48■□□□□ 0.07
COL6A3-205ENST00000392004 FANCD2Q9BXW9 1451 aa15.45■□□□□ 0.06
COL6A3-205ENST00000392004 TRIM26Q12899 539 aaPredicted RBP15.44■□□□□ 0.06
COL6A3-205ENST00000392004 UNC13AQ9UPW8 1703 aa15.42■□□□□ 0.06
COL6A3-205ENST00000392004 CEP164Q9UPV0 1460 aa15.4■□□□□ 0.06
COL6A3-205ENST00000392004 TRHP20396 242 aaPredicted RBP15.4■□□□□ 0.06
COL6A3-205ENST00000392004 ZEB1P37275 1124 aaPredicted RBP15.4■□□□□ 0.06
COL6A3-205ENST00000392004 KIF27Q86VH2 1401 aa15.4■□□□□ 0.06
COL6A3-205ENST00000392004 CYB5RLQ6IPT4 315 aa15.33■□□□□ 0.04
COL6A3-205ENST00000392004 CARMIL1Q5VZK9 1371 aa15.33■□□□□ 0.04
COL6A3-205ENST00000392004 RAD54L2Q9Y4B4 1467 aa15.33■□□□□ 0.04
COL6A3-205ENST00000392004 TRIM52Q96A61 297 aa15.29■□□□□ 0.04
COL6A3-205ENST00000392004 AQRO60306 1485 aaKnown RBP eCLIP15.28■□□□□ 0.04
COL6A3-205ENST00000392004 CHIC2Q9UKJ5 165 aa15.27■□□□□ 0.03
COL6A3-205ENST00000392004 CDK11AQ9UQ88 783 aaPredicted RBP15.27■□□□□ 0.03
COL6A3-205ENST00000392004 RUSC2Q8N2Y8 1516 aa15.26■□□□□ 0.03
COL6A3-205ENST00000392004 SENP3Q9H4L4 574 aaPredicted RBP15.22■□□□□ 0.03
COL6A3-205ENST00000392004 OSCARQ8IYS5 282 aa15.22■□□□□ 0.03
COL6A3-205ENST00000392004 CLIP1P30622 1438 aa15.21■□□□□ 0.03
COL6A3-205ENST00000392004 CNGB1Q14028 1251 aaPredicted RBP15.21■□□□□ 0.03
COL6A3-205ENST00000392004 JPH4Q96JJ6 628 aa15.18■□□□□ 0.02
COL6A3-205ENST00000392004 FGD5Q6ZNL6 1462 aa15.18■□□□□ 0.02
COL6A3-205ENST00000392004 PLEKHD1A6NEE1 506 aa15.17■□□□□ 0.02
COL6A3-205ENST00000392004 POLR3GLQ9BT43 218 aa15.17■□□□□ 0.02
COL6A3-205ENST00000392004 CFTRP13569 1480 aa15.17■□□□□ 0.02
COL6A3-205ENST00000392004 NEUROD1Q13562 356 aa15.14■□□□□ 0.01
COL6A3-205ENST00000392004 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.14■□□□□ 0.01
COL6A3-205ENST00000392004 MTUS2Q5JR59 1369 aa15.13■□□□□ 0.01
COL6A3-205ENST00000392004 ZNF326Q5BKZ1 582 aaKnown RBP15.11■□□□□ 0.01
COL6A3-205ENST00000392004 HMGXB3Q12766 1538 aa15.1■□□□□ 0.01
COL6A3-205ENST00000392004 SCAF1Q9H7N4 1312 aaKnown RBP15.1■□□□□ 0.01
COL6A3-205ENST00000392004 GOLGA3Q08378 1498 aa15.1■□□□□ 0.01
COL6A3-205ENST00000392004 CEP162Q5TB80 1403 aa15.1■□□□□ 0.01
COL6A3-205ENST00000392004 ESF1Q9H501 851 aaKnown RBP15.05■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 9.9 ms