RNA–Protein interactions for RNA: ENST00000379600.7

NHLRC3-202, Transcript of NHL repeat containing 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NHLRC3, Length 3,549 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NHLRC3-202ENST00000379600 NISCHQ9Y2I1 1504 aa18.85■□□□□ 0.61
NHLRC3-202ENST00000379600 SHROOM4Q9ULL8 1493 aa16.28■□□□□ 0.2
NHLRC3-202ENST00000379600 SUPT5HO00267 1087 aaKnown RBP16.04■□□□□ 0.16
NHLRC3-202ENST00000379600 ZCCHC6Q5VYS8 1495 aaKnown RBP16.02■□□□□ 0.15
NHLRC3-202ENST00000379600 MYO15BQ96JP2 1530 aa15.92■□□□□ 0.14
NHLRC3-202ENST00000379600 CCDC180Q9P1Z9 1646 aa15.88■□□□□ 0.13
NHLRC3-202ENST00000379600 CHIC1Q5VXU3 224 aa15.77■□□□□ 0.12
NHLRC3-202ENST00000379600 HRCP23327 699 aa15.75■□□□□ 0.11
NHLRC3-202ENST00000379600 PCGF6Q9BYE7 350 aa15.54■□□□□ 0.08
NHLRC3-202ENST00000379600 PPARGC1BQ86YN6 1023 aaKnown RBP15.46■□□□□ 0.07
NHLRC3-202ENST00000379600 DCAF8L2P0C7V8 631 aa15.44■□□□□ 0.06
NHLRC3-202ENST00000379600 DCAF1Q9Y4B6 1507 aa15.43■□□□□ 0.06
NHLRC3-202ENST00000379600 LOC105371045A0A1W2PR82 267 aa15.35■□□□□ 0.05
NHLRC3-202ENST00000379600 ABCC9O60706 1549 aa15.19■□□□□ 0.02
NHLRC3-202ENST00000379600 TRIM26Q12899 539 aaPredicted RBP15.14■□□□□ 0.01
NHLRC3-202ENST00000379600 RSF1Q96T23 1441 aaPredicted RBP15.04■□□□□ -0
NHLRC3-202ENST00000379600 SCRIBQ14160 1630 aa14.98□□□□□ -0.01
NHLRC3-202ENST00000379600 RB1CC1Q8TDY2 1594 aa14.98□□□□□ -0.01
NHLRC3-202ENST00000379600 TRIM41Q8WV44 630 aa14.88□□□□□ -0.03
NHLRC3-202ENST00000379600 ZEB1P37275 1124 aaPredicted RBP14.86□□□□□ -0.03
NHLRC3-202ENST00000379600 FAM9AQ8IZU1 332 aaPredicted RBP14.82□□□□□ -0.04
NHLRC3-202ENST00000379600 SCAF1Q9H7N4 1312 aaKnown RBP14.75□□□□□ -0.05
NHLRC3-202ENST00000379600 CECR2Q9BXF3 1484 aa14.74□□□□□ -0.05
NHLRC3-202ENST00000379600 MROH2BQ7Z745 1585 aa14.71□□□□□ -0.05
NHLRC3-202ENST00000379600 EHMT2Q96KQ7 1210 aa14.71□□□□□ -0.05
NHLRC3-202ENST00000379600 WIZO95785 1651 aa14.67□□□□□ -0.06
NHLRC3-202ENST00000379600 EIF4G1Q04637 1599 aaKnown RBP14.64□□□□□ -0.07
NHLRC3-202ENST00000379600 NACADO15069 1562 aa14.58□□□□□ -0.08
NHLRC3-202ENST00000379600 PELP1Q8IZL8 1130 aaKnown RBP14.57□□□□□ -0.08
NHLRC3-202ENST00000379600 BAZ1AQ9NRL2 1556 aaPredicted RBP14.56□□□□□ -0.08
NHLRC3-202ENST00000379600 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.54□□□□□ -0.08
NHLRC3-202ENST00000379600 NEUROD1Q13562 356 aa14.44□□□□□ -0.1
NHLRC3-202ENST00000379600 ABCC8Q09428 1581 aa14.44□□□□□ -0.1
NHLRC3-202ENST00000379600 ACIN1Q9UKV3 1341 aaKnown RBP14.44□□□□□ -0.1
NHLRC3-202ENST00000379600 CCER1Q8TC90 406 aaPredicted RBP14.44□□□□□ -0.1
NHLRC3-202ENST00000379600 WRNQ14191 1432 aaPredicted RBP eCLIP14.42□□□□□ -0.1
NHLRC3-202ENST00000379600 CCDC88BA6NC98 1476 aa14.42□□□□□ -0.1
NHLRC3-202ENST00000379600 TOP2AP11388 1531 aaKnown RBP14.38□□□□□ -0.11
NHLRC3-202ENST00000379600 CEP162Q5TB80 1403 aa14.36□□□□□ -0.11
NHLRC3-202ENST00000379600 SMARCA2P51531 1590 aa14.35□□□□□ -0.11
NHLRC3-202ENST00000379600 DIEXFQ68CQ4 756 aaKnown RBP14.34□□□□□ -0.11
NHLRC3-202ENST00000379600 SOGA1O94964 1423 aa14.33□□□□□ -0.11
NHLRC3-202ENST00000379600 SMARCA4P51532 1647 aa14.32□□□□□ -0.12
NHLRC3-202ENST00000379600 TTBK1Q5TCY1 1321 aaPredicted RBP14.31□□□□□ -0.12
NHLRC3-202ENST00000379600 RUSC2Q8N2Y8 1516 aa14.29□□□□□ -0.12
NHLRC3-202ENST00000379600 TNIKQ9UKE5 1360 aa14.28□□□□□ -0.12
NHLRC3-202ENST00000379600 GTF3C3Q9Y5Q9 886 aa14.28□□□□□ -0.12
NHLRC3-202ENST00000379600 UNC13AQ9UPW8 1703 aa14.25□□□□□ -0.13
NHLRC3-202ENST00000379600 CENPBP07199 599 aaPredicted RBP14.2□□□□□ -0.14
NHLRC3-202ENST00000379600 EEA1Q15075 1411 aa14.18□□□□□ -0.14
NHLRC3-202ENST00000379600 CSRNP3Q8WYN3 585 aa14.18□□□□□ -0.14
NHLRC3-202ENST00000379600 ZNF316A6NFI3 1004 aaPredicted RBP14.16□□□□□ -0.14
NHLRC3-202ENST00000379600 GOLGA3Q08378 1498 aa14.15□□□□□ -0.14
NHLRC3-202ENST00000379600 UBTFP17480 764 aaKnown RBP14.11□□□□□ -0.15
NHLRC3-202ENST00000379600 SYNJ1O43426 1573 aa14.09□□□□□ -0.15
NHLRC3-202ENST00000379600 KIF21BO75037 1637 aa14.08□□□□□ -0.16
NHLRC3-202ENST00000379600 MIER1Q8N108 512 aa14.05□□□□□ -0.16
NHLRC3-202ENST00000379600 YTHDC1Q96MU7 727 aaKnown RBP14.03□□□□□ -0.16
NHLRC3-202ENST00000379600 CEP164Q9UPV0 1460 aa14.03□□□□□ -0.16
NHLRC3-202ENST00000379600 PEG3Q9GZU2 1588 aa14.02□□□□□ -0.16
NHLRC3-202ENST00000379600 HNRNPUL2Q1KMD3 747 aaKnown RBP14.02□□□□□ -0.17
NHLRC3-202ENST00000379600 BICRAQ9NZM4 1560 aa14.01□□□□□ -0.17
NHLRC3-202ENST00000379600 CLIP1P30622 1438 aa14□□□□□ -0.17
NHLRC3-202ENST00000379600 VPS8Q8N3P4 1428 aa13.99□□□□□ -0.17
NHLRC3-202ENST00000379600 RAPGEF2Q9Y4G8 1499 aa13.96□□□□□ -0.17
NHLRC3-202ENST00000379600 BAZ1BQ9UIG0 1483 aaKnown RBP13.94□□□□□ -0.18
NHLRC3-202ENST00000379600 PABPN1Q86U42 306 aaKnown RBP eCLIP13.9□□□□□ -0.18
NHLRC3-202ENST00000379600 MYT1Q01538 1121 aa13.86□□□□□ -0.19
NHLRC3-202ENST00000379600 ATAD2BQ9ULI0 1458 aa13.85□□□□□ -0.19
NHLRC3-202ENST00000379600 TOP2BQ02880 1626 aa13.85□□□□□ -0.19
NHLRC3-202ENST00000379600 DHX57Q6P158 1386 aaKnown RBP13.84□□□□□ -0.19
NHLRC3-202ENST00000379600 ARAP1Q96P48 1450 aa13.82□□□□□ -0.2
NHLRC3-202ENST00000379600 RANGAP1P46060 587 aaPredicted RBP13.81□□□□□ -0.2
NHLRC3-202ENST00000379600 BIVM-ERCC5R4GMW8 1640 aa13.81□□□□□ -0.2
NHLRC3-202ENST00000379600 APLP2Q06481 763 aa13.78□□□□□ -0.2
NHLRC3-202ENST00000379600 PRXQ9BXM0 1461 aa13.78□□□□□ -0.2
NHLRC3-202ENST00000379600 ERICH3Q5RHP9 1530 aa13.77□□□□□ -0.2
NHLRC3-202ENST00000379600 CLSPNQ9HAW4 1339 aa13.77□□□□□ -0.21
NHLRC3-202ENST00000379600 KANK4Q5T7N3 995 aaPredicted RBP13.77□□□□□ -0.21
NHLRC3-202ENST00000379600 RRBP1Q9P2E9 1410 aaKnown RBP13.73□□□□□ -0.21
NHLRC3-202ENST00000379600 CUX2O14529 1486 aa13.72□□□□□ -0.21
NHLRC3-202ENST00000379600 SUPT16HQ9Y5B9 1047 aaKnown RBP13.71□□□□□ -0.21
NHLRC3-202ENST00000379600 CUX1P39880 1505 aa13.67□□□□□ -0.22
NHLRC3-202ENST00000379600 ARHGAP35Q9NRY4 1499 aa13.64□□□□□ -0.23
NHLRC3-202ENST00000379600 MAPKBP1O60336 1514 aa13.63□□□□□ -0.23
NHLRC3-202ENST00000379600 CCNB3Q8WWL7 1395 aa13.61□□□□□ -0.23
NHLRC3-202ENST00000379600 KCNH8Q96L42 1107 aa13.6□□□□□ -0.23
NHLRC3-202ENST00000379600 TSHZ2Q9NRE2 1034 aa13.57□□□□□ -0.24
NHLRC3-202ENST00000379600 KIF27Q86VH2 1401 aa13.57□□□□□ -0.24
NHLRC3-202ENST00000379600 RAB3GAP2Q9H2M9 1393 aa13.55□□□□□ -0.24
NHLRC3-202ENST00000379600 HMGXB3Q12766 1538 aa13.54□□□□□ -0.24
NHLRC3-202ENST00000379600 TIAM1Q13009 1591 aa13.53□□□□□ -0.24
NHLRC3-202ENST00000379600 ITGAEP38570 1179 aa13.52□□□□□ -0.25
NHLRC3-202ENST00000379600 WDR97A6NE52 1622 aa13.52□□□□□ -0.25
NHLRC3-202ENST00000379600 NCAPD3P42695 1498 aa13.51□□□□□ -0.25
NHLRC3-202ENST00000379600 CFTRP13569 1480 aa13.5□□□□□ -0.25
NHLRC3-202ENST00000379600 MAP3K1Q13233 1512 aa13.49□□□□□ -0.25
NHLRC3-202ENST00000379600 PHLDB1Q86UU1 1377 aa13.47□□□□□ -0.25
NHLRC3-202ENST00000379600 LRRC9Q6ZRR7 1453 aa13.46□□□□□ -0.25
NHLRC3-202ENST00000379600 SETD5Q9C0A6 1442 aa13.46□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms