RNA–Protein interactions for RNA: ENST00000374346.7

PTPN20-204, Transcript of protein tyrosine phosphatase, non-receptor type 20, humanhuman

TSL 1 (best) BASIC

Gene PTPN20, Length 2,481 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN20-204ENST00000374346 NISCHQ9Y2I1 1504 aa23.4■■□□□ 1.34
PTPN20-204ENST00000374346 CCDC180Q9P1Z9 1646 aa19.97■□□□□ 0.79
PTPN20-204ENST00000374346 SHROOM4Q9ULL8 1493 aa19.86■□□□□ 0.77
PTPN20-204ENST00000374346 ZCCHC6Q5VYS8 1495 aaKnown RBP19.82■□□□□ 0.76
PTPN20-204ENST00000374346 SUPT5HO00267 1087 aaKnown RBP19.57■□□□□ 0.72
PTPN20-204ENST00000374346 DCAF8L2P0C7V8 631 aa19.3■□□□□ 0.68
PTPN20-204ENST00000374346 DCAF1Q9Y4B6 1507 aa19.29■□□□□ 0.68
PTPN20-204ENST00000374346 CHIC1Q5VXU3 224 aa19.08■□□□□ 0.65
PTPN20-204ENST00000374346 MYO15BQ96JP2 1530 aa18.95■□□□□ 0.62
PTPN20-204ENST00000374346 ABCC9O60706 1549 aa18.73■□□□□ 0.59
PTPN20-204ENST00000374346 HRCP23327 699 aa18.68■□□□□ 0.58
PTPN20-204ENST00000374346 SCRIBQ14160 1630 aa18.59■□□□□ 0.57
PTPN20-204ENST00000374346 PCGF6Q9BYE7 350 aa18.58■□□□□ 0.56
PTPN20-204ENST00000374346 RSF1Q96T23 1441 aaPredicted RBP18.51■□□□□ 0.55
PTPN20-204ENST00000374346 LOC105371045A0A1W2PR82 267 aa18.45■□□□□ 0.54
PTPN20-204ENST00000374346 NACADO15069 1562 aa18.42■□□□□ 0.54
PTPN20-204ENST00000374346 RB1CC1Q8TDY2 1594 aa18.4■□□□□ 0.54
PTPN20-204ENST00000374346 TRIM41Q8WV44 630 aa18.31■□□□□ 0.52
PTPN20-204ENST00000374346 TRIM26Q12899 539 aaPredicted RBP18.3■□□□□ 0.52
PTPN20-204ENST00000374346 CECR2Q9BXF3 1484 aa18.15■□□□□ 0.5
PTPN20-204ENST00000374346 MROH2BQ7Z745 1585 aa18.13■□□□□ 0.49
PTPN20-204ENST00000374346 PPARGC1BQ86YN6 1023 aaKnown RBP18.12■□□□□ 0.49
PTPN20-204ENST00000374346 WIZO95785 1651 aa18.07■□□□□ 0.48
PTPN20-204ENST00000374346 ZEB1P37275 1124 aaPredicted RBP18.05■□□□□ 0.48
PTPN20-204ENST00000374346 FAM9AQ8IZU1 332 aaPredicted RBP18.04■□□□□ 0.48
PTPN20-204ENST00000374346 BAZ1AQ9NRL2 1556 aaPredicted RBP18.03■□□□□ 0.48
PTPN20-204ENST00000374346 EIF4G1Q04637 1599 aaKnown RBP17.86■□□□□ 0.45
PTPN20-204ENST00000374346 TOP2AP11388 1531 aaKnown RBP17.85■□□□□ 0.45
PTPN20-204ENST00000374346 SMARCA4P51532 1647 aa17.82■□□□□ 0.44
PTPN20-204ENST00000374346 EHMT2Q96KQ7 1210 aa17.82■□□□□ 0.44
PTPN20-204ENST00000374346 UNC13AQ9UPW8 1703 aa17.77■□□□□ 0.44
PTPN20-204ENST00000374346 CCDC88BA6NC98 1476 aa17.71■□□□□ 0.43
PTPN20-204ENST00000374346 SMARCA2P51531 1590 aa17.71■□□□□ 0.43
PTPN20-204ENST00000374346 ABCC8Q09428 1581 aa17.66■□□□□ 0.42
PTPN20-204ENST00000374346 EEA1Q15075 1411 aa17.61■□□□□ 0.41
PTPN20-204ENST00000374346 WRNQ14191 1432 aaPredicted RBP eCLIP17.58■□□□□ 0.4
PTPN20-204ENST00000374346 TNIKQ9UKE5 1360 aa17.53■□□□□ 0.4
PTPN20-204ENST00000374346 CEP162Q5TB80 1403 aa17.52■□□□□ 0.4
PTPN20-204ENST00000374346 PEG3Q9GZU2 1588 aa17.51■□□□□ 0.39
PTPN20-204ENST00000374346 CCER1Q8TC90 406 aaPredicted RBP17.5■□□□□ 0.39
PTPN20-204ENST00000374346 SOGA1O94964 1423 aa17.5■□□□□ 0.39
PTPN20-204ENST00000374346 BICRAQ9NZM4 1560 aa17.49■□□□□ 0.39
PTPN20-204ENST00000374346 CSRNP3Q8WYN3 585 aa17.48■□□□□ 0.39
PTPN20-204ENST00000374346 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.44■□□□□ 0.38
PTPN20-204ENST00000374346 GOLGA3Q08378 1498 aa17.43■□□□□ 0.38
PTPN20-204ENST00000374346 UBTFP17480 764 aaKnown RBP17.43■□□□□ 0.38
PTPN20-204ENST00000374346 PABPN1Q86U42 306 aaKnown RBP eCLIP17.42■□□□□ 0.38
PTPN20-204ENST00000374346 RUSC2Q8N2Y8 1516 aa17.37■□□□□ 0.37
PTPN20-204ENST00000374346 CEP164Q9UPV0 1460 aa17.34■□□□□ 0.37
PTPN20-204ENST00000374346 KIF21BO75037 1637 aa17.32■□□□□ 0.36
PTPN20-204ENST00000374346 BAZ1BQ9UIG0 1483 aaKnown RBP17.31■□□□□ 0.36
PTPN20-204ENST00000374346 ATAD2BQ9ULI0 1458 aa17.31■□□□□ 0.36
PTPN20-204ENST00000374346 TTBK1Q5TCY1 1321 aaPredicted RBP17.3■□□□□ 0.36
PTPN20-204ENST00000374346 SYNJ1O43426 1573 aa17.29■□□□□ 0.36
PTPN20-204ENST00000374346 CLIP1P30622 1438 aa17.2■□□□□ 0.34
PTPN20-204ENST00000374346 DIEXFQ68CQ4 756 aaKnown RBP17.2■□□□□ 0.34
PTPN20-204ENST00000374346 PELP1Q8IZL8 1130 aaKnown RBP17.19■□□□□ 0.34
PTPN20-204ENST00000374346 SCAF1Q9H7N4 1312 aaKnown RBP17.18■□□□□ 0.34
PTPN20-204ENST00000374346 APLP2Q06481 763 aa17.16■□□□□ 0.34
PTPN20-204ENST00000374346 VPS8Q8N3P4 1428 aa17.16■□□□□ 0.34
PTPN20-204ENST00000374346 TOP2BQ02880 1626 aa17.15■□□□□ 0.34
PTPN20-204ENST00000374346 CENPBP07199 599 aaPredicted RBP17.11■□□□□ 0.33
PTPN20-204ENST00000374346 RAPGEF2Q9Y4G8 1499 aa17.1■□□□□ 0.33
PTPN20-204ENST00000374346 BIVM-ERCC5R4GMW8 1640 aa17.09■□□□□ 0.33
PTPN20-204ENST00000374346 ACIN1Q9UKV3 1341 aaKnown RBP17.09■□□□□ 0.33
PTPN20-204ENST00000374346 ZNF316A6NFI3 1004 aaPredicted RBP17.06■□□□□ 0.32
PTPN20-204ENST00000374346 ERICH3Q5RHP9 1530 aa17.04■□□□□ 0.32
PTPN20-204ENST00000374346 HMGXB3Q12766 1538 aa17.04■□□□□ 0.32
PTPN20-204ENST00000374346 HNRNPUL2Q1KMD3 747 aaKnown RBP17.02■□□□□ 0.32
PTPN20-204ENST00000374346 NCAPD3P42695 1498 aa17■□□□□ 0.31
PTPN20-204ENST00000374346 NEUROD1Q13562 356 aa16.98■□□□□ 0.31
PTPN20-204ENST00000374346 PRXQ9BXM0 1461 aa16.97■□□□□ 0.31
PTPN20-204ENST00000374346 RANGAP1P46060 587 aaPredicted RBP16.94■□□□□ 0.3
PTPN20-204ENST00000374346 KIF27Q86VH2 1401 aa16.93■□□□□ 0.3
PTPN20-204ENST00000374346 CUX1P39880 1505 aa16.89■□□□□ 0.29
PTPN20-204ENST00000374346 CLSPNQ9HAW4 1339 aa16.89■□□□□ 0.29
PTPN20-204ENST00000374346 CFTRP13569 1480 aa16.88■□□□□ 0.29
PTPN20-204ENST00000374346 ARAP1Q96P48 1450 aa16.87■□□□□ 0.29
PTPN20-204ENST00000374346 GTF3C3Q9Y5Q9 886 aa16.87■□□□□ 0.29
PTPN20-204ENST00000374346 PRDM2Q13029 1718 aa16.85■□□□□ 0.29
PTPN20-204ENST00000374346 RRBP1Q9P2E9 1410 aaKnown RBP16.76■□□□□ 0.27
PTPN20-204ENST00000374346 DHX57Q6P158 1386 aaKnown RBP16.74■□□□□ 0.27
PTPN20-204ENST00000374346 KANK4Q5T7N3 995 aaPredicted RBP16.74■□□□□ 0.27
PTPN20-204ENST00000374346 MIER1Q8N108 512 aa16.74■□□□□ 0.27
PTPN20-204ENST00000374346 ARHGAP35Q9NRY4 1499 aa16.72■□□□□ 0.27
PTPN20-204ENST00000374346 YTHDC1Q96MU7 727 aaKnown RBP16.72■□□□□ 0.27
PTPN20-204ENST00000374346 CCNB3Q8WWL7 1395 aa16.69■□□□□ 0.26
PTPN20-204ENST00000374346 CUX2O14529 1486 aa16.69■□□□□ 0.26
PTPN20-204ENST00000374346 CADPSQ9ULU8 1353 aa16.67■□□□□ 0.26
PTPN20-204ENST00000374346 MAP3K1Q13233 1512 aa16.66■□□□□ 0.26
PTPN20-204ENST00000374346 IGF1RP08069 1367 aa16.65■□□□□ 0.26
PTPN20-204ENST00000374346 CARMIL1Q5VZK9 1371 aa16.62■□□□□ 0.25
PTPN20-204ENST00000374346 TIAM1Q13009 1591 aa16.61■□□□□ 0.25
PTPN20-204ENST00000374346 FGD5Q6ZNL6 1462 aa16.61■□□□□ 0.25
PTPN20-204ENST00000374346 FHAD1B1AJZ9 1412 aa16.58■□□□□ 0.25
PTPN20-204ENST00000374346 ITGAEP38570 1179 aa16.54■□□□□ 0.24
PTPN20-204ENST00000374346 LRRC9Q6ZRR7 1453 aa16.53■□□□□ 0.24
PTPN20-204ENST00000374346 RAB3GAP2Q9H2M9 1393 aa16.51■□□□□ 0.23
PTPN20-204ENST00000374346 CFAP43Q8NDM7 1665 aa16.5■□□□□ 0.23
PTPN20-204ENST00000374346 FANCD2Q9BXW9 1451 aa16.5■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms