RNA–Protein interactions for RNA: ENST00000372396.3

KDM4A-201, Transcript of lysine demethylase 4A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene KDM4A, Length 4,474 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
KDM4A-201ENST00000372396 NISCHQ9Y2I1 1504 aa19.77■□□□□ 0.76
KDM4A-201ENST00000372396 DCAF8L2P0C7V8 631 aa17.75■□□□□ 0.43
KDM4A-201ENST00000372396 SHROOM4Q9ULL8 1493 aa17.18■□□□□ 0.34
KDM4A-201ENST00000372396 PELP1Q8IZL8 1130 aaKnown RBP17.08■□□□□ 0.32
KDM4A-201ENST00000372396 SUPT5HO00267 1087 aaKnown RBP16.98■□□□□ 0.31
KDM4A-201ENST00000372396 CCDC180Q9P1Z9 1646 aa16.84■□□□□ 0.29
KDM4A-201ENST00000372396 MYT1Q01538 1121 aa16.83■□□□□ 0.28
KDM4A-201ENST00000372396 ZCCHC6Q5VYS8 1495 aaKnown RBP16.54■□□□□ 0.24
KDM4A-201ENST00000372396 ABCC9O60706 1549 aa16.42■□□□□ 0.22
KDM4A-201ENST00000372396 DCAF1Q9Y4B6 1507 aa16.12■□□□□ 0.17
KDM4A-201ENST00000372396 HRCP23327 699 aa15.98■□□□□ 0.15
KDM4A-201ENST00000372396 SCRIBQ14160 1630 aa15.97■□□□□ 0.15
KDM4A-201ENST00000372396 NACADO15069 1562 aa15.96■□□□□ 0.14
KDM4A-201ENST00000372396 TRIM41Q8WV44 630 aa15.93■□□□□ 0.14
KDM4A-201ENST00000372396 RB1CC1Q8TDY2 1594 aa15.9■□□□□ 0.14
KDM4A-201ENST00000372396 TTBK1Q5TCY1 1321 aaPredicted RBP15.87■□□□□ 0.13
KDM4A-201ENST00000372396 CHIC1Q5VXU3 224 aa15.84■□□□□ 0.13
KDM4A-201ENST00000372396 MYO15BQ96JP2 1530 aa15.8■□□□□ 0.12
KDM4A-201ENST00000372396 PABPN1Q86U42 306 aaKnown RBP eCLIP15.8■□□□□ 0.12
KDM4A-201ENST00000372396 FAM9AQ8IZU1 332 aaPredicted RBP15.78■□□□□ 0.12
KDM4A-201ENST00000372396 EHMT2Q96KQ7 1210 aa15.73■□□□□ 0.11
KDM4A-201ENST00000372396 PPARGC1BQ86YN6 1023 aaKnown RBP15.55■□□□□ 0.08
KDM4A-201ENST00000372396 RSF1Q96T23 1441 aaPredicted RBP15.55■□□□□ 0.08
KDM4A-201ENST00000372396 PCGF6Q9BYE7 350 aa15.53■□□□□ 0.08
KDM4A-201ENST00000372396 APLP2Q06481 763 aa15.49■□□□□ 0.07
KDM4A-201ENST00000372396 UBTFP17480 764 aaKnown RBP15.43■□□□□ 0.06
KDM4A-201ENST00000372396 SCAF1Q9H7N4 1312 aaKnown RBP15.42■□□□□ 0.06
KDM4A-201ENST00000372396 BAZ1AQ9NRL2 1556 aaPredicted RBP15.41■□□□□ 0.06
KDM4A-201ENST00000372396 LOC105371045A0A1W2PR82 267 aa15.39■□□□□ 0.05
KDM4A-201ENST00000372396 CECR2Q9BXF3 1484 aa15.35■□□□□ 0.05
KDM4A-201ENST00000372396 CENPBP07199 599 aaPredicted RBP15.33■□□□□ 0.04
KDM4A-201ENST00000372396 ERICH6Q7L0X2 663 aa15.31■□□□□ 0.04
KDM4A-201ENST00000372396 MROH2BQ7Z745 1585 aa15.25■□□□□ 0.03
KDM4A-201ENST00000372396 RANGAP1P46060 587 aaPredicted RBP15.22■□□□□ 0.03
KDM4A-201ENST00000372396 TRIM26Q12899 539 aaPredicted RBP15.2■□□□□ 0.02
KDM4A-201ENST00000372396 BAZ1BQ9UIG0 1483 aaKnown RBP15.18■□□□□ 0.02
KDM4A-201ENST00000372396 BCL11AQ9H165 835 aa15.17■□□□□ 0.02
KDM4A-201ENST00000372396 ZEB1P37275 1124 aaPredicted RBP15.15■□□□□ 0.02
KDM4A-201ENST00000372396 CSRNP3Q8WYN3 585 aa15.09■□□□□ 0.01
KDM4A-201ENST00000372396 SMARCA2P51531 1590 aa15.07■□□□□ 0
KDM4A-201ENST00000372396 GTF3C3Q9Y5Q9 886 aa15.07■□□□□ 0
KDM4A-201ENST00000372396 SMARCA4P51532 1647 aa15.07■□□□□ 0
KDM4A-201ENST00000372396 TOP2AP11388 1531 aaKnown RBP15.06■□□□□ 0
KDM4A-201ENST00000372396 WIZO95785 1651 aa15.06■□□□□ 0
KDM4A-201ENST00000372396 PRKCSHP14314 528 aaPredicted RBP15.05■□□□□ -0
KDM4A-201ENST00000372396 ACIN1Q9UKV3 1341 aaKnown RBP15.05■□□□□ -0
KDM4A-201ENST00000372396 ATP1B4Q9UN42 357 aaPredicted RBP15□□□□□ -0.01
KDM4A-201ENST00000372396 CCDC88BA6NC98 1476 aa15□□□□□ -0.01
KDM4A-201ENST00000372396 EEA1Q15075 1411 aa14.98□□□□□ -0.01
KDM4A-201ENST00000372396 WRNQ14191 1432 aaPredicted RBP eCLIP14.97□□□□□ -0.01
KDM4A-201ENST00000372396 CCER1Q8TC90 406 aaPredicted RBP14.96□□□□□ -0.01
KDM4A-201ENST00000372396 ATAD2BQ9ULI0 1458 aa14.92□□□□□ -0.02
KDM4A-201ENST00000372396 NEUROD1Q13562 356 aa14.84□□□□□ -0.03
KDM4A-201ENST00000372396 GOLGA3Q08378 1498 aa14.78□□□□□ -0.04
KDM4A-201ENST00000372396 BICRAQ9NZM4 1560 aa14.76□□□□□ -0.05
KDM4A-201ENST00000372396 ABCC8Q09428 1581 aa14.75□□□□□ -0.05
KDM4A-201ENST00000372396 CEP164Q9UPV0 1460 aa14.73□□□□□ -0.05
KDM4A-201ENST00000372396 KIF27Q86VH2 1401 aa14.73□□□□□ -0.05
KDM4A-201ENST00000372396 TNIKQ9UKE5 1360 aa14.72□□□□□ -0.05
KDM4A-201ENST00000372396 NCAPD3P42695 1498 aa14.71□□□□□ -0.05
KDM4A-201ENST00000372396 ANP32EQ9BTT0 268 aa14.71□□□□□ -0.05
KDM4A-201ENST00000372396 EIF4G1Q04637 1599 aaKnown RBP14.71□□□□□ -0.06
KDM4A-201ENST00000372396 HNRNPUL2Q1KMD3 747 aaKnown RBP14.7□□□□□ -0.06
KDM4A-201ENST00000372396 UNC13AQ9UPW8 1703 aa14.68□□□□□ -0.06
KDM4A-201ENST00000372396 CEP162Q5TB80 1403 aa14.68□□□□□ -0.06
KDM4A-201ENST00000372396 SOGA1O94964 1423 aa14.67□□□□□ -0.06
KDM4A-201ENST00000372396 CLIP1P30622 1438 aa14.67□□□□□ -0.06
KDM4A-201ENST00000372396 CADPSQ9ULU8 1353 aa14.65□□□□□ -0.06
KDM4A-201ENST00000372396 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.63□□□□□ -0.07
KDM4A-201ENST00000372396 YTHDC1Q96MU7 727 aaKnown RBP14.63□□□□□ -0.07
KDM4A-201ENST00000372396 ITGAEP38570 1179 aa14.62□□□□□ -0.07
KDM4A-201ENST00000372396 HMGXB3Q12766 1538 aa14.6□□□□□ -0.07
KDM4A-201ENST00000372396 PDS5BQ9NTI5 1447 aa14.56□□□□□ -0.08
KDM4A-201ENST00000372396 PEG3Q9GZU2 1588 aa14.56□□□□□ -0.08
KDM4A-201ENST00000372396 P3H3Q8IVL6 736 aa14.55□□□□□ -0.08
KDM4A-201ENST00000372396 CUX2O14529 1486 aa14.54□□□□□ -0.08
KDM4A-201ENST00000372396 FBLN2P98095 1184 aa14.53□□□□□ -0.08
KDM4A-201ENST00000372396 DIEXFQ68CQ4 756 aaKnown RBP14.53□□□□□ -0.08
KDM4A-201ENST00000372396 FAM50AQ14320 339 aaKnown RBP14.52□□□□□ -0.08
KDM4A-201ENST00000372396 CARMIL1Q5VZK9 1371 aa14.47□□□□□ -0.09
KDM4A-201ENST00000372396 FANCD2Q9BXW9 1451 aa14.45□□□□□ -0.1
KDM4A-201ENST00000372396 CFTRP13569 1480 aa14.45□□□□□ -0.1
KDM4A-201ENST00000372396 ERCC6Q03468 1493 aa14.44□□□□□ -0.1
KDM4A-201ENST00000372396 CC2D2AQ9P2K1 1620 aa14.43□□□□□ -0.1
KDM4A-201ENST00000372396 CDK11AQ9UQ88 783 aaPredicted RBP14.4□□□□□ -0.1
KDM4A-201ENST00000372396 RUSC2Q8N2Y8 1516 aa14.39□□□□□ -0.11
KDM4A-201ENST00000372396 VPS8Q8N3P4 1428 aa14.38□□□□□ -0.11
KDM4A-201ENST00000372396 CHMP7Q8WUX9 453 aaPredicted RBP14.38□□□□□ -0.11
KDM4A-201ENST00000372396 SYNJ1O43426 1573 aa14.35□□□□□ -0.11
KDM4A-201ENST00000372396 SLC24A1O60721 1099 aa14.35□□□□□ -0.11
KDM4A-201ENST00000372396 RAPGEF2Q9Y4G8 1499 aa14.34□□□□□ -0.11
KDM4A-201ENST00000372396 FHAD1B1AJZ9 1412 aa14.34□□□□□ -0.11
KDM4A-201ENST00000372396 TOP2BQ02880 1626 aa14.32□□□□□ -0.12
KDM4A-201ENST00000372396 FGD5Q6ZNL6 1462 aa14.32□□□□□ -0.12
KDM4A-201ENST00000372396 MTUS2Q5JR59 1369 aa14.31□□□□□ -0.12
KDM4A-201ENST00000372396 TDRD9Q8NDG6 1382 aaKnown RBP14.28□□□□□ -0.12
KDM4A-201ENST00000372396 ARID3CA6NKF2 412 aa14.27□□□□□ -0.12
KDM4A-201ENST00000372396 KIF21BO75037 1637 aa14.27□□□□□ -0.12
KDM4A-201ENST00000372396 TRIM52Q96A61 297 aa14.26□□□□□ -0.13
KDM4A-201ENST00000372396 CUX1P39880 1505 aa14.24□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 10.3 ms