RNA–Protein interactions for RNA: ENST00000369763.4

LRIF1-201, Transcript of ligand dependent nuclear receptor interacting factor 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene LRIF1, Length 3,475 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRIF1-201ENST00000369763 NISCHQ9Y2I1 1504 aa21.58■■□□□ 1.04
LRIF1-201ENST00000369763 SHROOM4Q9ULL8 1493 aa19.29■□□□□ 0.68
LRIF1-201ENST00000369763 SUPT5HO00267 1087 aaKnown RBP19.03■□□□□ 0.64
LRIF1-201ENST00000369763 DCAF8L2P0C7V8 631 aa18.77■□□□□ 0.6
LRIF1-201ENST00000369763 CHIC1Q5VXU3 224 aa18.25■□□□□ 0.51
LRIF1-201ENST00000369763 ZCCHC6Q5VYS8 1495 aaKnown RBP18.22■□□□□ 0.51
LRIF1-201ENST00000369763 MYO15BQ96JP2 1530 aa18.19■□□□□ 0.5
LRIF1-201ENST00000369763 PCGF6Q9BYE7 350 aa18.17■□□□□ 0.5
LRIF1-201ENST00000369763 LOC105371045A0A1W2PR82 267 aa18.01■□□□□ 0.47
LRIF1-201ENST00000369763 HRCP23327 699 aa17.99■□□□□ 0.47
LRIF1-201ENST00000369763 PPARGC1BQ86YN6 1023 aaKnown RBP17.97■□□□□ 0.47
LRIF1-201ENST00000369763 CCDC180Q9P1Z9 1646 aa17.88■□□□□ 0.45
LRIF1-201ENST00000369763 EHMT2Q96KQ7 1210 aa17.82■□□□□ 0.44
LRIF1-201ENST00000369763 FAM9AQ8IZU1 332 aaPredicted RBP17.7■□□□□ 0.42
LRIF1-201ENST00000369763 TRIM41Q8WV44 630 aa17.5■□□□□ 0.39
LRIF1-201ENST00000369763 TRIM26Q12899 539 aaPredicted RBP17.46■□□□□ 0.39
LRIF1-201ENST00000369763 DCAF1Q9Y4B6 1507 aa17.4■□□□□ 0.38
LRIF1-201ENST00000369763 SCRIBQ14160 1630 aa17.36■□□□□ 0.37
LRIF1-201ENST00000369763 RSF1Q96T23 1441 aaPredicted RBP17.3■□□□□ 0.36
LRIF1-201ENST00000369763 TTBK1Q5TCY1 1321 aaPredicted RBP17.23■□□□□ 0.35
LRIF1-201ENST00000369763 ABCC9O60706 1549 aa17.18■□□□□ 0.34
LRIF1-201ENST00000369763 RB1CC1Q8TDY2 1594 aa17.15■□□□□ 0.34
LRIF1-201ENST00000369763 CECR2Q9BXF3 1484 aa17.09■□□□□ 0.33
LRIF1-201ENST00000369763 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.04■□□□□ 0.32
LRIF1-201ENST00000369763 ZEB1P37275 1124 aaPredicted RBP17.01■□□□□ 0.31
LRIF1-201ENST00000369763 MROH2BQ7Z745 1585 aa16.93■□□□□ 0.3
LRIF1-201ENST00000369763 CCER1Q8TC90 406 aaPredicted RBP16.93■□□□□ 0.3
LRIF1-201ENST00000369763 SCAF1Q9H7N4 1312 aaKnown RBP16.84■□□□□ 0.29
LRIF1-201ENST00000369763 WIZO95785 1651 aa16.83■□□□□ 0.28
LRIF1-201ENST00000369763 UBTFP17480 764 aaKnown RBP16.75■□□□□ 0.27
LRIF1-201ENST00000369763 RANGAP1P46060 587 aaPredicted RBP16.73■□□□□ 0.27
LRIF1-201ENST00000369763 PABPN1Q86U42 306 aaKnown RBP eCLIP16.71■□□□□ 0.26
LRIF1-201ENST00000369763 ABCC8Q09428 1581 aa16.68■□□□□ 0.26
LRIF1-201ENST00000369763 NACADO15069 1562 aa16.67■□□□□ 0.26
LRIF1-201ENST00000369763 CCDC88BA6NC98 1476 aa16.64■□□□□ 0.26
LRIF1-201ENST00000369763 SOGA1O94964 1423 aa16.62■□□□□ 0.25
LRIF1-201ENST00000369763 NEUROD1Q13562 356 aa16.61■□□□□ 0.25
LRIF1-201ENST00000369763 DIEXFQ68CQ4 756 aaKnown RBP16.61■□□□□ 0.25
LRIF1-201ENST00000369763 HNRNPUL2Q1KMD3 747 aaKnown RBP16.58■□□□□ 0.24
LRIF1-201ENST00000369763 YTHDC1Q96MU7 727 aaKnown RBP16.57■□□□□ 0.24
LRIF1-201ENST00000369763 CEP162Q5TB80 1403 aa16.54■□□□□ 0.24
LRIF1-201ENST00000369763 RUSC2Q8N2Y8 1516 aa16.54■□□□□ 0.24
LRIF1-201ENST00000369763 CSRNP3Q8WYN3 585 aa16.54■□□□□ 0.24
LRIF1-201ENST00000369763 ACIN1Q9UKV3 1341 aaKnown RBP16.51■□□□□ 0.23
LRIF1-201ENST00000369763 BAZ1AQ9NRL2 1556 aaPredicted RBP16.51■□□□□ 0.23
LRIF1-201ENST00000369763 GTF3C3Q9Y5Q9 886 aa16.5■□□□□ 0.23
LRIF1-201ENST00000369763 CENPBP07199 599 aaPredicted RBP16.39■□□□□ 0.21
LRIF1-201ENST00000369763 TOP2AP11388 1531 aaKnown RBP16.38■□□□□ 0.21
LRIF1-201ENST00000369763 TNIKQ9UKE5 1360 aa16.37■□□□□ 0.21
LRIF1-201ENST00000369763 EIF4G1Q04637 1599 aaKnown RBP16.37■□□□□ 0.21
LRIF1-201ENST00000369763 SMARCA2P51531 1590 aa16.36■□□□□ 0.21
LRIF1-201ENST00000369763 SMARCA4P51532 1647 aa16.35■□□□□ 0.21
LRIF1-201ENST00000369763 PELP1Q8IZL8 1130 aaKnown RBP16.34■□□□□ 0.21
LRIF1-201ENST00000369763 APLP2Q06481 763 aa16.34■□□□□ 0.21
LRIF1-201ENST00000369763 ZNF316A6NFI3 1004 aaPredicted RBP16.33■□□□□ 0.21
LRIF1-201ENST00000369763 WRNQ14191 1432 aaPredicted RBP eCLIP16.3■□□□□ 0.2
LRIF1-201ENST00000369763 MIER1Q8N108 512 aa16.28■□□□□ 0.2
LRIF1-201ENST00000369763 GOLGA3Q08378 1498 aa16.24■□□□□ 0.19
LRIF1-201ENST00000369763 CLIP1P30622 1438 aa16.21■□□□□ 0.19
LRIF1-201ENST00000369763 ITGAEP38570 1179 aa16.19■□□□□ 0.18
LRIF1-201ENST00000369763 EEA1Q15075 1411 aa16.16■□□□□ 0.18
LRIF1-201ENST00000369763 RAPGEF2Q9Y4G8 1499 aa16.13■□□□□ 0.17
LRIF1-201ENST00000369763 UNC13AQ9UPW8 1703 aa16.13■□□□□ 0.17
LRIF1-201ENST00000369763 SYNJ1O43426 1573 aa16.11■□□□□ 0.17
LRIF1-201ENST00000369763 CEP164Q9UPV0 1460 aa16.1■□□□□ 0.17
LRIF1-201ENST00000369763 KANK4Q5T7N3 995 aaPredicted RBP16.07■□□□□ 0.16
LRIF1-201ENST00000369763 VPS8Q8N3P4 1428 aa16.04■□□□□ 0.16
LRIF1-201ENST00000369763 BAZ1BQ9UIG0 1483 aaKnown RBP16.04■□□□□ 0.16
LRIF1-201ENST00000369763 BICRAQ9NZM4 1560 aa16.02■□□□□ 0.16
LRIF1-201ENST00000369763 ATAD2BQ9ULI0 1458 aa16.01■□□□□ 0.15
LRIF1-201ENST00000369763 ATP1B4Q9UN42 357 aaPredicted RBP15.97■□□□□ 0.15
LRIF1-201ENST00000369763 KIF21BO75037 1637 aa15.93■□□□□ 0.14
LRIF1-201ENST00000369763 P3H3Q8IVL6 736 aa15.9■□□□□ 0.14
LRIF1-201ENST00000369763 DHX57Q6P158 1386 aaKnown RBP15.87■□□□□ 0.13
LRIF1-201ENST00000369763 KCNH8Q96L42 1107 aa15.85■□□□□ 0.13
LRIF1-201ENST00000369763 HIRIP3Q9BW71 556 aaPredicted RBP15.83■□□□□ 0.12
LRIF1-201ENST00000369763 FAM50AQ14320 339 aaKnown RBP15.82■□□□□ 0.12
LRIF1-201ENST00000369763 ARAP1Q96P48 1450 aa15.82■□□□□ 0.12
LRIF1-201ENST00000369763 PEG3Q9GZU2 1588 aa15.8■□□□□ 0.12
LRIF1-201ENST00000369763 BCANQ96GW7 911 aa15.78■□□□□ 0.12
LRIF1-201ENST00000369763 SIN3AQ96ST3 1273 aa15.77■□□□□ 0.11
LRIF1-201ENST00000369763 TOP2BQ02880 1626 aa15.74■□□□□ 0.11
LRIF1-201ENST00000369763 PRXQ9BXM0 1461 aa15.74■□□□□ 0.11
LRIF1-201ENST00000369763 KIF27Q86VH2 1401 aa15.73■□□□□ 0.11
LRIF1-201ENST00000369763 CCNB3Q8WWL7 1395 aa15.73■□□□□ 0.11
LRIF1-201ENST00000369763 SUPT16HQ9Y5B9 1047 aaKnown RBP15.73■□□□□ 0.11
LRIF1-201ENST00000369763 DDX10Q13206 875 aaKnown RBP15.73■□□□□ 0.11
LRIF1-201ENST00000369763 CUX1P39880 1505 aa15.7■□□□□ 0.1
LRIF1-201ENST00000369763 RAB3GAP2Q9H2M9 1393 aa15.68■□□□□ 0.1
LRIF1-201ENST00000369763 ARHGAP35Q9NRY4 1499 aa15.66■□□□□ 0.1
LRIF1-201ENST00000369763 CUX2O14529 1486 aa15.65■□□□□ 0.1
LRIF1-201ENST00000369763 CLSPNQ9HAW4 1339 aa15.65■□□□□ 0.1
LRIF1-201ENST00000369763 RRBP1Q9P2E9 1410 aaKnown RBP15.61■□□□□ 0.09
LRIF1-201ENST00000369763 TRIM52Q96A61 297 aa15.6■□□□□ 0.09
LRIF1-201ENST00000369763 IGF1RP08069 1367 aa15.6■□□□□ 0.09
LRIF1-201ENST00000369763 ERICH3Q5RHP9 1530 aa15.6■□□□□ 0.09
LRIF1-201ENST00000369763 CARMIL1Q5VZK9 1371 aa15.58■□□□□ 0.09
LRIF1-201ENST00000369763 PHLDB1Q86UU1 1377 aa15.58■□□□□ 0.08
LRIF1-201ENST00000369763 FKBP8Q14318 412 aa15.56■□□□□ 0.08
LRIF1-201ENST00000369763 BIVM-ERCC5R4GMW8 1640 aa15.56■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 9 ms