RNA–Protein interactions for RNA: ENST00000368648.7

EBF3-202, Transcript of early B cell factor 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene EBF3, Length 4,375 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
EBF3-202ENST00000368648 NISCHQ9Y2I1 1504 aa19.42■□□□□ 0.7
EBF3-202ENST00000368648 DCAF8L2P0C7V8 631 aa19.16■□□□□ 0.66
EBF3-202ENST00000368648 SUPT5HO00267 1087 aaKnown RBP18.1■□□□□ 0.49
EBF3-202ENST00000368648 SHROOM4Q9ULL8 1493 aa17.87■□□□□ 0.45
EBF3-202ENST00000368648 PCGF6Q9BYE7 350 aa17.69■□□□□ 0.42
EBF3-202ENST00000368648 EHMT2Q96KQ7 1210 aa17.65■□□□□ 0.42
EBF3-202ENST00000368648 PPARGC1BQ86YN6 1023 aaKnown RBP17.24■□□□□ 0.35
EBF3-202ENST00000368648 ABCC9O60706 1549 aa17.23■□□□□ 0.35
EBF3-202ENST00000368648 TTBK1Q5TCY1 1321 aaPredicted RBP17.1■□□□□ 0.33
EBF3-202ENST00000368648 HRCP23327 699 aa17.09■□□□□ 0.33
EBF3-202ENST00000368648 FAM9AQ8IZU1 332 aaPredicted RBP17.09■□□□□ 0.33
EBF3-202ENST00000368648 PELP1Q8IZL8 1130 aaKnown RBP16.99■□□□□ 0.31
EBF3-202ENST00000368648 YTHDC1Q96MU7 727 aaKnown RBP16.85■□□□□ 0.29
EBF3-202ENST00000368648 LOC105371045A0A1W2PR82 267 aa16.74■□□□□ 0.27
EBF3-202ENST00000368648 CENPBP07199 599 aaPredicted RBP16.73■□□□□ 0.27
EBF3-202ENST00000368648 CCER1Q8TC90 406 aaPredicted RBP16.71■□□□□ 0.27
EBF3-202ENST00000368648 PABPN1Q86U42 306 aaKnown RBP eCLIP16.68■□□□□ 0.26
EBF3-202ENST00000368648 ZEB1P37275 1124 aaPredicted RBP16.59■□□□□ 0.25
EBF3-202ENST00000368648 RANGAP1P46060 587 aaPredicted RBP16.55■□□□□ 0.24
EBF3-202ENST00000368648 TRIM26Q12899 539 aaPredicted RBP16.51■□□□□ 0.23
EBF3-202ENST00000368648 CHIC1Q5VXU3 224 aa16.49■□□□□ 0.23
EBF3-202ENST00000368648 TRIM41Q8WV44 630 aa16.46■□□□□ 0.23
EBF3-202ENST00000368648 CCDC180Q9P1Z9 1646 aa16.44■□□□□ 0.22
EBF3-202ENST00000368648 MYT1Q01538 1121 aa16.44■□□□□ 0.22
EBF3-202ENST00000368648 APLP2Q06481 763 aa16.41■□□□□ 0.22
EBF3-202ENST00000368648 GTF3C3Q9Y5Q9 886 aa16.35■□□□□ 0.21
EBF3-202ENST00000368648 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.33■□□□□ 0.2
EBF3-202ENST00000368648 ATP1B4Q9UN42 357 aaPredicted RBP16.27■□□□□ 0.19
EBF3-202ENST00000368648 ERICH6Q7L0X2 663 aa16.26■□□□□ 0.19
EBF3-202ENST00000368648 UBTFP17480 764 aaKnown RBP16.23■□□□□ 0.19
EBF3-202ENST00000368648 DIEXFQ68CQ4 756 aaKnown RBP16.19■□□□□ 0.18
EBF3-202ENST00000368648 SCAF1Q9H7N4 1312 aaKnown RBP16.16■□□□□ 0.18
EBF3-202ENST00000368648 ZCCHC6Q5VYS8 1495 aaKnown RBP16.05■□□□□ 0.16
EBF3-202ENST00000368648 ACIN1Q9UKV3 1341 aaKnown RBP16.05■□□□□ 0.16
EBF3-202ENST00000368648 HNRNPUL2Q1KMD3 747 aaKnown RBP16.02■□□□□ 0.16
EBF3-202ENST00000368648 RB1CC1Q8TDY2 1594 aa16.01■□□□□ 0.15
EBF3-202ENST00000368648 SCRIBQ14160 1630 aa16■□□□□ 0.15
EBF3-202ENST00000368648 NEUROD1Q13562 356 aa16■□□□□ 0.15
EBF3-202ENST00000368648 BCANQ96GW7 911 aa15.99■□□□□ 0.15
EBF3-202ENST00000368648 NEFLP07196 543 aa15.98■□□□□ 0.15
EBF3-202ENST00000368648 NACADO15069 1562 aa15.87■□□□□ 0.13
EBF3-202ENST00000368648 ITGAEP38570 1179 aa15.86■□□□□ 0.13
EBF3-202ENST00000368648 CNGB1Q14028 1251 aaPredicted RBP15.8■□□□□ 0.12
EBF3-202ENST00000368648 MYO15BQ96JP2 1530 aa15.66■□□□□ 0.1
EBF3-202ENST00000368648 ZNF316A6NFI3 1004 aaPredicted RBP15.64■□□□□ 0.09
EBF3-202ENST00000368648 MYT1LQ9UL68 1186 aa15.64■□□□□ 0.09
EBF3-202ENST00000368648 FBLN2P98095 1184 aa15.63■□□□□ 0.09
EBF3-202ENST00000368648 POLR3GLQ9BT43 218 aa15.52■□□□□ 0.08
EBF3-202ENST00000368648 DCAF1Q9Y4B6 1507 aa15.5■□□□□ 0.07
EBF3-202ENST00000368648 MIER1Q8N108 512 aa15.5■□□□□ 0.07
EBF3-202ENST00000368648 FKBP8Q14318 412 aa15.42■□□□□ 0.06
EBF3-202ENST00000368648 CECR2Q9BXF3 1484 aa15.38■□□□□ 0.05
EBF3-202ENST00000368648 RTL5Q5HYW3 569 aaPredicted RBP15.38■□□□□ 0.05
EBF3-202ENST00000368648 ARID3CA6NKF2 412 aa15.37■□□□□ 0.05
EBF3-202ENST00000368648 P3H3Q8IVL6 736 aa15.37■□□□□ 0.05
EBF3-202ENST00000368648 DNAJC5BQ9UF47 199 aa15.32■□□□□ 0.04
EBF3-202ENST00000368648 FAM50AQ14320 339 aaKnown RBP15.29■□□□□ 0.04
EBF3-202ENST00000368648 CDK11AQ9UQ88 783 aaPredicted RBP15.29■□□□□ 0.04
EBF3-202ENST00000368648 TRIM52Q96A61 297 aa15.28■□□□□ 0.04
EBF3-202ENST00000368648 DAXXQ9UER7 740 aaPredicted RBP15.28■□□□□ 0.04
EBF3-202ENST00000368648 CSRNP3Q8WYN3 585 aa15.27■□□□□ 0.03
EBF3-202ENST00000368648 IRX6P78412 446 aaPredicted RBP15.25■□□□□ 0.03
EBF3-202ENST00000368648 NBR1Q14596 966 aa15.25■□□□□ 0.03
EBF3-202ENST00000368648 BCL11AQ9H165 835 aa15.24■□□□□ 0.03
EBF3-202ENST00000368648 EIF5BO60841 1220 aaKnown RBP15.23■□□□□ 0.03
EBF3-202ENST00000368648 BAZ1BQ9UIG0 1483 aaKnown RBP15.21■□□□□ 0.03
EBF3-202ENST00000368648 ANP32EQ9BTT0 268 aa15.21■□□□□ 0.03
EBF3-202ENST00000368648 DDX10Q13206 875 aaKnown RBP15.2■□□□□ 0.02
EBF3-202ENST00000368648 HIRIP3Q9BW71 556 aaPredicted RBP15.2■□□□□ 0.02
EBF3-202ENST00000368648 RSF1Q96T23 1441 aaPredicted RBP15.19■□□□□ 0.02
EBF3-202ENST00000368648 ANP32CO43423 234 aa15.17■□□□□ 0.02
EBF3-202ENST00000368648 NPM2Q86SE8 214 aaKnown RBP15.17■□□□□ 0.02
EBF3-202ENST00000368648 BAZ1AQ9NRL2 1556 aaPredicted RBP15.12■□□□□ 0.01
EBF3-202ENST00000368648 ERCC6Q03468 1493 aa15.1■□□□□ 0.01
EBF3-202ENST00000368648 MROH2BQ7Z745 1585 aa15.1■□□□□ 0.01
EBF3-202ENST00000368648 SENP3-EIF4A1A0A087X0R7 540 aa15.08■□□□□ 0
EBF3-202ENST00000368648 SUPT16HQ9Y5B9 1047 aaKnown RBP15.08■□□□□ 0
EBF3-202ENST00000368648 HNRNPUQ00839 825 aaKnown RBP eCLIP15.06■□□□□ 0
EBF3-202ENST00000368648 ZNF777Q9ULD5 760 aaPredicted RBP15.04■□□□□ -0
EBF3-202ENST00000368648 RTN4Q9NQC3 1192 aaKnown RBP15.04■□□□□ -0
EBF3-202ENST00000368648 CLSPNQ9HAW4 1339 aa15.03■□□□□ -0
EBF3-202ENST00000368648 CHMP7Q8WUX9 453 aaPredicted RBP14.99□□□□□ -0.01
EBF3-202ENST00000368648 EIF4G1Q04637 1599 aaKnown RBP14.99□□□□□ -0.01
EBF3-202ENST00000368648 ZNF326Q5BKZ1 582 aaKnown RBP14.98□□□□□ -0.01
EBF3-202ENST00000368648 ATAD2BQ9ULI0 1458 aa14.97□□□□□ -0.01
EBF3-202ENST00000368648 FAM9BQ8IZU0 186 aa14.96□□□□□ -0.01
EBF3-202ENST00000368648 SLC4A1APQ9BWU0 796 aaKnown RBP14.96□□□□□ -0.01
EBF3-202ENST00000368648 BICRAQ9NZM4 1560 aa14.96□□□□□ -0.01
EBF3-202ENST00000368648 ANP32AP39687 249 aaKnown RBP14.95□□□□□ -0.02
EBF3-202ENST00000368648 SALL2Q9Y467 1007 aaPredicted RBP14.94□□□□□ -0.02
EBF3-202ENST00000368648 SMARCA2P51531 1590 aa14.93□□□□□ -0.02
EBF3-202ENST00000368648 TSHZ2Q9NRE2 1034 aa14.91□□□□□ -0.02
EBF3-202ENST00000368648 ARXQ96QS3 562 aa14.91□□□□□ -0.02
EBF3-202ENST00000368648 NPM1P06748 294 aaKnown RBP eCLIP14.9□□□□□ -0.02
EBF3-202ENST00000368648 CC2D2AQ9P2K1 1620 aa14.88□□□□□ -0.03
EBF3-202ENST00000368648 PLPPR3Q6T4P5 718 aa14.86□□□□□ -0.03
EBF3-202ENST00000368648 RBM19Q9Y4C8 960 aaKnown RBP14.86□□□□□ -0.03
EBF3-202ENST00000368648 WIZO95785 1651 aa14.86□□□□□ -0.03
EBF3-202ENST00000368648 SMARCA4P51532 1647 aa14.85□□□□□ -0.03
EBF3-202ENST00000368648 ZBTB47Q9UFB7 747 aaPredicted RBP14.83□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms