RNA–Protein interactions for RNA: ENST00000368012.3

NECTIN4-201, Transcript of nectin cell adhesion molecule 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NECTIN4, Length 3,502 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NECTIN4-201ENST00000368012 NISCHQ9Y2I1 1504 aa21.15■□□□□ 0.98
NECTIN4-201ENST00000368012 SHROOM4Q9ULL8 1493 aa19.21■□□□□ 0.67
NECTIN4-201ENST00000368012 SUPT5HO00267 1087 aaKnown RBP19.13■□□□□ 0.65
NECTIN4-201ENST00000368012 DCAF8L2P0C7V8 631 aa18.94■□□□□ 0.62
NECTIN4-201ENST00000368012 PCGF6Q9BYE7 350 aa18.39■□□□□ 0.53
NECTIN4-201ENST00000368012 EHMT2Q96KQ7 1210 aa18.18■□□□□ 0.5
NECTIN4-201ENST00000368012 PPARGC1BQ86YN6 1023 aaKnown RBP18.14■□□□□ 0.49
NECTIN4-201ENST00000368012 CHIC1Q5VXU3 224 aa18.06■□□□□ 0.48
NECTIN4-201ENST00000368012 HRCP23327 699 aa18.05■□□□□ 0.48
NECTIN4-201ENST00000368012 LOC105371045A0A1W2PR82 267 aa18■□□□□ 0.47
NECTIN4-201ENST00000368012 MYO15BQ96JP2 1530 aa17.93■□□□□ 0.46
NECTIN4-201ENST00000368012 FAM9AQ8IZU1 332 aaPredicted RBP17.88■□□□□ 0.45
NECTIN4-201ENST00000368012 ZCCHC6Q5VYS8 1495 aaKnown RBP17.87■□□□□ 0.45
NECTIN4-201ENST00000368012 TTBK1Q5TCY1 1321 aaPredicted RBP17.57■□□□□ 0.4
NECTIN4-201ENST00000368012 CCDC180Q9P1Z9 1646 aa17.5■□□□□ 0.39
NECTIN4-201ENST00000368012 TRIM41Q8WV44 630 aa17.49■□□□□ 0.39
NECTIN4-201ENST00000368012 TRIM26Q12899 539 aaPredicted RBP17.48■□□□□ 0.39
NECTIN4-201ENST00000368012 DCAF1Q9Y4B6 1507 aa17.27■□□□□ 0.35
NECTIN4-201ENST00000368012 CCER1Q8TC90 406 aaPredicted RBP17.19■□□□□ 0.34
NECTIN4-201ENST00000368012 SCAF1Q9H7N4 1312 aaKnown RBP17.18■□□□□ 0.34
NECTIN4-201ENST00000368012 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.17■□□□□ 0.34
NECTIN4-201ENST00000368012 ZEB1P37275 1124 aaPredicted RBP17.15■□□□□ 0.34
NECTIN4-201ENST00000368012 PELP1Q8IZL8 1130 aaKnown RBP17.09■□□□□ 0.33
NECTIN4-201ENST00000368012 ABCC9O60706 1549 aa17.05■□□□□ 0.32
NECTIN4-201ENST00000368012 RANGAP1P46060 587 aaPredicted RBP17■□□□□ 0.31
NECTIN4-201ENST00000368012 YTHDC1Q96MU7 727 aaKnown RBP17■□□□□ 0.31
NECTIN4-201ENST00000368012 RSF1Q96T23 1441 aaPredicted RBP16.99■□□□□ 0.31
NECTIN4-201ENST00000368012 SCRIBQ14160 1630 aa16.97■□□□□ 0.31
NECTIN4-201ENST00000368012 UBTFP17480 764 aaKnown RBP16.86■□□□□ 0.29
NECTIN4-201ENST00000368012 RB1CC1Q8TDY2 1594 aa16.83■□□□□ 0.28
NECTIN4-201ENST00000368012 NEUROD1Q13562 356 aa16.81■□□□□ 0.28
NECTIN4-201ENST00000368012 DIEXFQ68CQ4 756 aaKnown RBP16.8■□□□□ 0.28
NECTIN4-201ENST00000368012 GTF3C3Q9Y5Q9 886 aa16.79■□□□□ 0.28
NECTIN4-201ENST00000368012 CENPBP07199 599 aaPredicted RBP16.78■□□□□ 0.28
NECTIN4-201ENST00000368012 HNRNPUL2Q1KMD3 747 aaKnown RBP16.74■□□□□ 0.27
NECTIN4-201ENST00000368012 CECR2Q9BXF3 1484 aa16.72■□□□□ 0.27
NECTIN4-201ENST00000368012 ACIN1Q9UKV3 1341 aaKnown RBP16.7■□□□□ 0.26
NECTIN4-201ENST00000368012 APLP2Q06481 763 aa16.59■□□□□ 0.25
NECTIN4-201ENST00000368012 MROH2BQ7Z745 1585 aa16.59■□□□□ 0.25
NECTIN4-201ENST00000368012 WIZO95785 1651 aa16.48■□□□□ 0.23
NECTIN4-201ENST00000368012 PABPN1Q86U42 306 aaKnown RBP eCLIP16.46■□□□□ 0.23
NECTIN4-201ENST00000368012 ITGAEP38570 1179 aa16.43■□□□□ 0.22
NECTIN4-201ENST00000368012 ZNF316A6NFI3 1004 aaPredicted RBP16.42■□□□□ 0.22
NECTIN4-201ENST00000368012 MIER1Q8N108 512 aa16.37■□□□□ 0.21
NECTIN4-201ENST00000368012 ABCC8Q09428 1581 aa16.36■□□□□ 0.21
NECTIN4-201ENST00000368012 CSRNP3Q8WYN3 585 aa16.35■□□□□ 0.21
NECTIN4-201ENST00000368012 CCDC88BA6NC98 1476 aa16.35■□□□□ 0.21
NECTIN4-201ENST00000368012 SOGA1O94964 1423 aa16.33■□□□□ 0.2
NECTIN4-201ENST00000368012 CEP162Q5TB80 1403 aa16.31■□□□□ 0.2
NECTIN4-201ENST00000368012 NACADO15069 1562 aa16.31■□□□□ 0.2
NECTIN4-201ENST00000368012 MYT1Q01538 1121 aa16.28■□□□□ 0.2
NECTIN4-201ENST00000368012 ATP1B4Q9UN42 357 aaPredicted RBP16.25■□□□□ 0.19
NECTIN4-201ENST00000368012 RUSC2Q8N2Y8 1516 aa16.23■□□□□ 0.19
NECTIN4-201ENST00000368012 BAZ1AQ9NRL2 1556 aaPredicted RBP16.19■□□□□ 0.18
NECTIN4-201ENST00000368012 BCANQ96GW7 911 aa16.18■□□□□ 0.18
NECTIN4-201ENST00000368012 TNIKQ9UKE5 1360 aa16.16■□□□□ 0.18
NECTIN4-201ENST00000368012 WRNQ14191 1432 aaPredicted RBP eCLIP16.11■□□□□ 0.17
NECTIN4-201ENST00000368012 TOP2AP11388 1531 aaKnown RBP16.07■□□□□ 0.16
NECTIN4-201ENST00000368012 EIF4G1Q04637 1599 aaKnown RBP16.05■□□□□ 0.16
NECTIN4-201ENST00000368012 SMARCA2P51531 1590 aa16.04■□□□□ 0.16
NECTIN4-201ENST00000368012 GOLGA3Q08378 1498 aa16.02■□□□□ 0.16
NECTIN4-201ENST00000368012 SMARCA4P51532 1647 aa16■□□□□ 0.15
NECTIN4-201ENST00000368012 CLIP1P30622 1438 aa15.99■□□□□ 0.15
NECTIN4-201ENST00000368012 HIRIP3Q9BW71 556 aaPredicted RBP15.99■□□□□ 0.15
NECTIN4-201ENST00000368012 EEA1Q15075 1411 aa15.96■□□□□ 0.15
NECTIN4-201ENST00000368012 P3H3Q8IVL6 736 aa15.93■□□□□ 0.14
NECTIN4-201ENST00000368012 FAM50AQ14320 339 aaKnown RBP15.93■□□□□ 0.14
NECTIN4-201ENST00000368012 CNGB1Q14028 1251 aaPredicted RBP15.9■□□□□ 0.14
NECTIN4-201ENST00000368012 DDX10Q13206 875 aaKnown RBP15.88■□□□□ 0.13
NECTIN4-201ENST00000368012 CEP164Q9UPV0 1460 aa15.88■□□□□ 0.13
NECTIN4-201ENST00000368012 KCNH8Q96L42 1107 aa15.86■□□□□ 0.13
NECTIN4-201ENST00000368012 KANK4Q5T7N3 995 aaPredicted RBP15.86■□□□□ 0.13
NECTIN4-201ENST00000368012 RAPGEF2Q9Y4G8 1499 aa15.85■□□□□ 0.13
NECTIN4-201ENST00000368012 NEFLP07196 543 aa15.84■□□□□ 0.13
NECTIN4-201ENST00000368012 VPS8Q8N3P4 1428 aa15.83■□□□□ 0.12
NECTIN4-201ENST00000368012 FKBP8Q14318 412 aa15.82■□□□□ 0.12
NECTIN4-201ENST00000368012 SUPT16HQ9Y5B9 1047 aaKnown RBP15.82■□□□□ 0.12
NECTIN4-201ENST00000368012 TRIM52Q96A61 297 aa15.82■□□□□ 0.12
NECTIN4-201ENST00000368012 SYNJ1O43426 1573 aa15.79■□□□□ 0.12
NECTIN4-201ENST00000368012 SIN3AQ96ST3 1273 aa15.75■□□□□ 0.11
NECTIN4-201ENST00000368012 BCL11AQ9H165 835 aa15.72■□□□□ 0.11
NECTIN4-201ENST00000368012 TSHZ2Q9NRE2 1034 aa15.72■□□□□ 0.11
NECTIN4-201ENST00000368012 BAZ1BQ9UIG0 1483 aaKnown RBP15.7■□□□□ 0.1
NECTIN4-201ENST00000368012 IRX6P78412 446 aaPredicted RBP15.7■□□□□ 0.1
NECTIN4-201ENST00000368012 DHX57Q6P158 1386 aaKnown RBP15.69■□□□□ 0.1
NECTIN4-201ENST00000368012 UNC13AQ9UPW8 1703 aa15.69■□□□□ 0.1
NECTIN4-201ENST00000368012 KIF21BO75037 1637 aa15.68■□□□□ 0.1
NECTIN4-201ENST00000368012 ANP32EQ9BTT0 268 aa15.68■□□□□ 0.1
NECTIN4-201ENST00000368012 ATAD2BQ9ULI0 1458 aa15.66■□□□□ 0.1
NECTIN4-201ENST00000368012 ERICH6Q7L0X2 663 aa15.65■□□□□ 0.1
NECTIN4-201ENST00000368012 POLR3GLQ9BT43 218 aa15.64■□□□□ 0.09
NECTIN4-201ENST00000368012 ARID3CA6NKF2 412 aa15.63■□□□□ 0.09
NECTIN4-201ENST00000368012 ANP32CO43423 234 aa15.62■□□□□ 0.09
NECTIN4-201ENST00000368012 BICRAQ9NZM4 1560 aa15.61■□□□□ 0.09
NECTIN4-201ENST00000368012 SENP3-EIF4A1A0A087X0R7 540 aa15.6■□□□□ 0.09
NECTIN4-201ENST00000368012 CLSPNQ9HAW4 1339 aa15.55■□□□□ 0.08
NECTIN4-201ENST00000368012 ARAP1Q96P48 1450 aa15.55■□□□□ 0.08
NECTIN4-201ENST00000368012 CCNB3Q8WWL7 1395 aa15.54■□□□□ 0.08
NECTIN4-201ENST00000368012 HNRNPUQ00839 825 aaKnown RBP eCLIP15.53■□□□□ 0.08
NECTIN4-201ENST00000368012 CHIC2Q9UKJ5 165 aa15.5■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms