RNA–Protein interactions for RNA: ENST00000348069.6

NLRP3-202, Transcript of NLR family pyrin domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene NLRP3, Length 3,828 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NLRP3-202ENST00000348069 NISCHQ9Y2I1 1504 aa15.82■□□□□ 0.12
NLRP3-202ENST00000348069 DCAF8L2P0C7V8 631 aa14.74□□□□□ -0.05
NLRP3-202ENST00000348069 SHROOM4Q9ULL8 1493 aa14.25□□□□□ -0.13
NLRP3-202ENST00000348069 SUPT5HO00267 1087 aaKnown RBP13.95□□□□□ -0.18
NLRP3-202ENST00000348069 ABCC9O60706 1549 aa13.55□□□□□ -0.24
NLRP3-202ENST00000348069 EHMT2Q96KQ7 1210 aa13.29□□□□□ -0.28
NLRP3-202ENST00000348069 PABPN1Q86U42 306 aaKnown RBP eCLIP13.22□□□□□ -0.29
NLRP3-202ENST00000348069 PCGF6Q9BYE7 350 aa13.19□□□□□ -0.3
NLRP3-202ENST00000348069 PELP1Q8IZL8 1130 aaKnown RBP13.18□□□□□ -0.3
NLRP3-202ENST00000348069 ZCCHC6Q5VYS8 1495 aaKnown RBP13.17□□□□□ -0.3
NLRP3-202ENST00000348069 CCDC180Q9P1Z9 1646 aa13.14□□□□□ -0.31
NLRP3-202ENST00000348069 HRCP23327 699 aa13.11□□□□□ -0.31
NLRP3-202ENST00000348069 FAM9AQ8IZU1 332 aaPredicted RBP13.07□□□□□ -0.32
NLRP3-202ENST00000348069 SCRIBQ14160 1630 aa12.95□□□□□ -0.34
NLRP3-202ENST00000348069 PPARGC1BQ86YN6 1023 aaKnown RBP12.94□□□□□ -0.34
NLRP3-202ENST00000348069 MYT1Q01538 1121 aa12.87□□□□□ -0.35
NLRP3-202ENST00000348069 CHIC1Q5VXU3 224 aa12.82□□□□□ -0.36
NLRP3-202ENST00000348069 TRIM41Q8WV44 630 aa12.82□□□□□ -0.36
NLRP3-202ENST00000348069 LOC105371045A0A1W2PR82 267 aa12.76□□□□□ -0.37
NLRP3-202ENST00000348069 RANGAP1P46060 587 aaPredicted RBP12.72□□□□□ -0.37
NLRP3-202ENST00000348069 TTBK1Q5TCY1 1321 aaPredicted RBP12.69□□□□□ -0.38
NLRP3-202ENST00000348069 DCAF1Q9Y4B6 1507 aa12.66□□□□□ -0.38
NLRP3-202ENST00000348069 CECR2Q9BXF3 1484 aa12.63□□□□□ -0.39
NLRP3-202ENST00000348069 TRIM26Q12899 539 aaPredicted RBP12.63□□□□□ -0.39
NLRP3-202ENST00000348069 ZEB1P37275 1124 aaPredicted RBP12.61□□□□□ -0.39
NLRP3-202ENST00000348069 MYO15BQ96JP2 1530 aa12.59□□□□□ -0.39
NLRP3-202ENST00000348069 RB1CC1Q8TDY2 1594 aa12.58□□□□□ -0.4
NLRP3-202ENST00000348069 NACADO15069 1562 aa12.57□□□□□ -0.4
NLRP3-202ENST00000348069 RSF1Q96T23 1441 aaPredicted RBP12.56□□□□□ -0.4
NLRP3-202ENST00000348069 UBTFP17480 764 aaKnown RBP12.46□□□□□ -0.41
NLRP3-202ENST00000348069 MROH2BQ7Z745 1585 aa12.4□□□□□ -0.42
NLRP3-202ENST00000348069 CENPBP07199 599 aaPredicted RBP12.38□□□□□ -0.43
NLRP3-202ENST00000348069 CCER1Q8TC90 406 aaPredicted RBP12.38□□□□□ -0.43
NLRP3-202ENST00000348069 SCAF1Q9H7N4 1312 aaKnown RBP12.34□□□□□ -0.43
NLRP3-202ENST00000348069 ATP1B4Q9UN42 357 aaPredicted RBP12.28□□□□□ -0.44
NLRP3-202ENST00000348069 WIZO95785 1651 aa12.23□□□□□ -0.45
NLRP3-202ENST00000348069 YTHDC1Q96MU7 727 aaKnown RBP12.23□□□□□ -0.45
NLRP3-202ENST00000348069 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.23□□□□□ -0.45
NLRP3-202ENST00000348069 GTF3C3Q9Y5Q9 886 aa12.2□□□□□ -0.46
NLRP3-202ENST00000348069 BAZ1AQ9NRL2 1556 aaPredicted RBP12.19□□□□□ -0.46
NLRP3-202ENST00000348069 APLP2Q06481 763 aa12.17□□□□□ -0.46
NLRP3-202ENST00000348069 ACIN1Q9UKV3 1341 aaKnown RBP12.17□□□□□ -0.46
NLRP3-202ENST00000348069 DIEXFQ68CQ4 756 aaKnown RBP12.16□□□□□ -0.46
NLRP3-202ENST00000348069 BAZ1BQ9UIG0 1483 aaKnown RBP12.14□□□□□ -0.47
NLRP3-202ENST00000348069 CCDC88BA6NC98 1476 aa12.12□□□□□ -0.47
NLRP3-202ENST00000348069 PRKCSHP14314 528 aaPredicted RBP12.12□□□□□ -0.47
NLRP3-202ENST00000348069 NEUROD1Q13562 356 aa12.11□□□□□ -0.47
NLRP3-202ENST00000348069 DNAJC5BQ9UF47 199 aa12.11□□□□□ -0.47
NLRP3-202ENST00000348069 CSRNP3Q8WYN3 585 aa12.11□□□□□ -0.47
NLRP3-202ENST00000348069 P3H3Q8IVL6 736 aa12.07□□□□□ -0.48
NLRP3-202ENST00000348069 ABCC8Q09428 1581 aa12.06□□□□□ -0.48
NLRP3-202ENST00000348069 ATAD2BQ9ULI0 1458 aa12.03□□□□□ -0.48
NLRP3-202ENST00000348069 SMARCA4P51532 1647 aa12.03□□□□□ -0.48
NLRP3-202ENST00000348069 ITGAEP38570 1179 aa12.02□□□□□ -0.48
NLRP3-202ENST00000348069 FBLN2P98095 1184 aa12.02□□□□□ -0.49
NLRP3-202ENST00000348069 BICRAQ9NZM4 1560 aa12.01□□□□□ -0.49
NLRP3-202ENST00000348069 SOGA1O94964 1423 aa12□□□□□ -0.49
NLRP3-202ENST00000348069 BCL11AQ9H165 835 aa12□□□□□ -0.49
NLRP3-202ENST00000348069 ARID3CA6NKF2 412 aa11.99□□□□□ -0.49
NLRP3-202ENST00000348069 HNRNPUL2Q1KMD3 747 aaKnown RBP11.98□□□□□ -0.49
NLRP3-202ENST00000348069 WRNQ14191 1432 aaPredicted RBP eCLIP11.97□□□□□ -0.49
NLRP3-202ENST00000348069 TOP2AP11388 1531 aaKnown RBP11.93□□□□□ -0.5
NLRP3-202ENST00000348069 RUSC2Q8N2Y8 1516 aa11.89□□□□□ -0.51
NLRP3-202ENST00000348069 UNC13AQ9UPW8 1703 aa11.89□□□□□ -0.51
NLRP3-202ENST00000348069 EIF4G1Q04637 1599 aaKnown RBP11.88□□□□□ -0.51
NLRP3-202ENST00000348069 ZNF316A6NFI3 1004 aaPredicted RBP11.88□□□□□ -0.51
NLRP3-202ENST00000348069 SMARCA2P51531 1590 aa11.87□□□□□ -0.51
NLRP3-202ENST00000348069 CADPSQ9ULU8 1353 aa11.79□□□□□ -0.52
NLRP3-202ENST00000348069 NESP48681 1621 aa11.77□□□□□ -0.53
NLRP3-202ENST00000348069 TDRD9Q8NDG6 1382 aaKnown RBP11.76□□□□□ -0.53
NLRP3-202ENST00000348069 NCAPD3P42695 1498 aa11.76□□□□□ -0.53
NLRP3-202ENST00000348069 ERICH6Q7L0X2 663 aa11.75□□□□□ -0.53
NLRP3-202ENST00000348069 FAM50AQ14320 339 aaKnown RBP11.74□□□□□ -0.53
NLRP3-202ENST00000348069 MIER1Q8N108 512 aa11.74□□□□□ -0.53
NLRP3-202ENST00000348069 CEP162Q5TB80 1403 aa11.74□□□□□ -0.53
NLRP3-202ENST00000348069 CC2D2AQ9P2K1 1620 aa11.72□□□□□ -0.53
NLRP3-202ENST00000348069 CUX2O14529 1486 aa11.72□□□□□ -0.53
NLRP3-202ENST00000348069 CLIP1P30622 1438 aa11.7□□□□□ -0.54
NLRP3-202ENST00000348069 KIF27Q86VH2 1401 aa11.68□□□□□ -0.54
NLRP3-202ENST00000348069 ERCC6Q03468 1493 aa11.68□□□□□ -0.54
NLRP3-202ENST00000348069 CHMP7Q8WUX9 453 aaPredicted RBP11.66□□□□□ -0.54
NLRP3-202ENST00000348069 NEFLP07196 543 aa11.65□□□□□ -0.54
NLRP3-202ENST00000348069 FANCD2Q9BXW9 1451 aa11.65□□□□□ -0.54
NLRP3-202ENST00000348069 GOLGA3Q08378 1498 aa11.65□□□□□ -0.55
NLRP3-202ENST00000348069 BCANQ96GW7 911 aa11.64□□□□□ -0.55
NLRP3-202ENST00000348069 RAPGEF2Q9Y4G8 1499 aa11.64□□□□□ -0.55
NLRP3-202ENST00000348069 RAD54L2Q9Y4B4 1467 aa11.63□□□□□ -0.55
NLRP3-202ENST00000348069 TNIKQ9UKE5 1360 aa11.63□□□□□ -0.55
NLRP3-202ENST00000348069 CARMIL1Q5VZK9 1371 aa11.62□□□□□ -0.55
NLRP3-202ENST00000348069 SYNJ1O43426 1573 aa11.61□□□□□ -0.55
NLRP3-202ENST00000348069 CEP164Q9UPV0 1460 aa11.59□□□□□ -0.55
NLRP3-202ENST00000348069 EEA1Q15075 1411 aa11.59□□□□□ -0.55
NLRP3-202ENST00000348069 PDS5BQ9NTI5 1447 aa11.59□□□□□ -0.55
NLRP3-202ENST00000348069 KANK4Q5T7N3 995 aaPredicted RBP11.59□□□□□ -0.55
NLRP3-202ENST00000348069 CFTRP13569 1480 aa11.58□□□□□ -0.56
NLRP3-202ENST00000348069 ZNF777Q9ULD5 760 aaPredicted RBP11.56□□□□□ -0.56
NLRP3-202ENST00000348069 FGD5Q6ZNL6 1462 aa11.55□□□□□ -0.56
NLRP3-202ENST00000348069 MYT1LQ9UL68 1186 aa11.53□□□□□ -0.56
NLRP3-202ENST00000348069 CHIC2Q9UKJ5 165 aa11.53□□□□□ -0.56
NLRP3-202ENST00000348069 IGF1RP08069 1367 aa11.53□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms