RNA–Protein interactions for RNA: ENST00000347652.6

VCAM1-202, Transcript of vascular cell adhesion molecule 1, humanhuman

TSL 1 (best) BASIC

Gene VCAM1, Length 2,812 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAM1-202ENST00000347652 NISCHQ9Y2I1 1504 aa11.87□□□□□ -0.51
VCAM1-202ENST00000347652 CHIC1Q5VXU3 224 aa10.99□□□□□ -0.65
VCAM1-202ENST00000347652 SLC24A1O60721 1099 aa10.74□□□□□ -0.69
VCAM1-202ENST00000347652 AEBP2Q6ZN18 517 aaPredicted RBP10.52□□□□□ -0.73
VCAM1-202ENST00000347652 CCDC180Q9P1Z9 1646 aa10.49□□□□□ -0.73
VCAM1-202ENST00000347652 EHMT2Q96KQ7 1210 aa10.46□□□□□ -0.74
VCAM1-202ENST00000347652 ABCC9O60706 1549 aa10.33□□□□□ -0.76
VCAM1-202ENST00000347652 PLPPR3Q6T4P5 718 aa10.15□□□□□ -0.79
VCAM1-202ENST00000347652 PHF23Q9BUL5 403 aaPredicted RBP10.04□□□□□ -0.8
VCAM1-202ENST00000347652 DCAF8L2P0C7V8 631 aa9.97□□□□□ -0.81
VCAM1-202ENST00000347652 RTN4Q9NQC3 1192 aaKnown RBP9.94□□□□□ -0.82
VCAM1-202ENST00000347652 ZCCHC6Q5VYS8 1495 aaKnown RBP9.89□□□□□ -0.83
VCAM1-202ENST00000347652 RB1CC1Q8TDY2 1594 aa9.86□□□□□ -0.83
VCAM1-202ENST00000347652 NACADO15069 1562 aa9.85□□□□□ -0.83
VCAM1-202ENST00000347652 DCAF1Q9Y4B6 1507 aa9.78□□□□□ -0.84
VCAM1-202ENST00000347652 MYO15BQ96JP2 1530 aa9.77□□□□□ -0.84
VCAM1-202ENST00000347652 UNC13AQ9UPW8 1703 aa9.72□□□□□ -0.85
VCAM1-202ENST00000347652 KCNA4P22459 653 aa9.71□□□□□ -0.85
VCAM1-202ENST00000347652 CSRNP3Q8WYN3 585 aa9.71□□□□□ -0.86
VCAM1-202ENST00000347652 PABPN1Q86U42 306 aaKnown RBP eCLIP9.69□□□□□ -0.86
VCAM1-202ENST00000347652 SCRIBQ14160 1630 aa9.66□□□□□ -0.86
VCAM1-202ENST00000347652 BICRAQ9NZM4 1560 aa9.63□□□□□ -0.87
VCAM1-202ENST00000347652 PRKCSHP14314 528 aaPredicted RBP9.52□□□□□ -0.89
VCAM1-202ENST00000347652 NCBP3Q53F19 620 aaKnown RBP9.5□□□□□ -0.89
VCAM1-202ENST00000347652 DNAJC5BQ9UF47 199 aa9.5□□□□□ -0.89
VCAM1-202ENST00000347652 AMER1Q5JTC6 1135 aaPredicted RBP9.5□□□□□ -0.89
VCAM1-202ENST00000347652 SHROOM4Q9ULL8 1493 aa9.5□□□□□ -0.89
VCAM1-202ENST00000347652 DAXXQ9UER7 740 aaPredicted RBP9.46□□□□□ -0.89
VCAM1-202ENST00000347652 EIF4G1Q04637 1599 aaKnown RBP9.36□□□□□ -0.91
VCAM1-202ENST00000347652 CC2D2AQ9P2K1 1620 aa9.32□□□□□ -0.92
VCAM1-202ENST00000347652 CECR2Q9BXF3 1484 aa9.3□□□□□ -0.92
VCAM1-202ENST00000347652 SMARCA4P51532 1647 aa9.21□□□□□ -0.94
VCAM1-202ENST00000347652 SLC4A1APQ9BWU0 796 aaKnown RBP9.2□□□□□ -0.94
VCAM1-202ENST00000347652 TIMELESSQ9UNS1 1208 aa9.19□□□□□ -0.94
VCAM1-202ENST00000347652 MROH2BQ7Z745 1585 aa9.19□□□□□ -0.94
VCAM1-202ENST00000347652 BAZ1AQ9NRL2 1556 aaPredicted RBP9.17□□□□□ -0.94
VCAM1-202ENST00000347652 ATAD2BQ9ULI0 1458 aa9.15□□□□□ -0.94
VCAM1-202ENST00000347652 ADRA2BP18089 450 aa9.12□□□□□ -0.95
VCAM1-202ENST00000347652 NCAPD3P42695 1498 aa9.11□□□□□ -0.95
VCAM1-202ENST00000347652 WIZO95785 1651 aa9.1□□□□□ -0.95
VCAM1-202ENST00000347652 SMARCA2P51531 1590 aa9.09□□□□□ -0.95
VCAM1-202ENST00000347652 PEG3Q9GZU2 1588 aa9.08□□□□□ -0.96
VCAM1-202ENST00000347652 RSF1Q96T23 1441 aaPredicted RBP9.08□□□□□ -0.96
VCAM1-202ENST00000347652 TAOK2Q9UL54 1235 aa9.07□□□□□ -0.96
VCAM1-202ENST00000347652 BAZ1BQ9UIG0 1483 aaKnown RBP9.07□□□□□ -0.96
VCAM1-202ENST00000347652 HMGXB3Q12766 1538 aa9.06□□□□□ -0.96
VCAM1-202ENST00000347652 TULP1O00294 542 aaPredicted RBP9.04□□□□□ -0.96
VCAM1-202ENST00000347652 ZBTB22O15209 634 aa9.03□□□□□ -0.96
VCAM1-202ENST00000347652 SUPT5HO00267 1087 aaKnown RBP8.97□□□□□ -0.97
VCAM1-202ENST00000347652 NESP48681 1621 aa8.97□□□□□ -0.97
VCAM1-202ENST00000347652 TPRNQ4KMQ1 711 aa8.97□□□□□ -0.97
VCAM1-202ENST00000347652 ARXQ96QS3 562 aa8.96□□□□□ -0.97
VCAM1-202ENST00000347652 TOP2AP11388 1531 aaKnown RBP8.95□□□□□ -0.98
VCAM1-202ENST00000347652 CCDC88BA6NC98 1476 aa8.88□□□□□ -0.99
VCAM1-202ENST00000347652 BCANQ96GW7 911 aa8.86□□□□□ -0.99
VCAM1-202ENST00000347652 CADPSQ9ULU8 1353 aa8.86□□□□□ -0.99
VCAM1-202ENST00000347652 LAMC3Q9Y6N6 1575 aa8.86□□□□□ -0.99
VCAM1-202ENST00000347652 ERCC6Q03468 1493 aa8.86□□□□□ -0.99
VCAM1-202ENST00000347652 PLCB2Q00722 1185 aa8.85□□□□□ -0.99
VCAM1-202ENST00000347652 KIF21AQ7Z4S6 1674 aa8.84□□□□□ -0.99
VCAM1-202ENST00000347652 CFTRP13569 1480 aa8.82□□□□□ -1
VCAM1-202ENST00000347652 HAP1P54257 671 aaPredicted RBP8.8□□□□□ -1
VCAM1-202ENST00000347652 PDS5BQ9NTI5 1447 aa8.79□□□□□ -1
VCAM1-202ENST00000347652 THOC2Q8NI27 1593 aaKnown RBP8.78□□□□□ -1
VCAM1-202ENST00000347652 FANCD2Q9BXW9 1451 aa8.77□□□□□ -1
VCAM1-202ENST00000347652 APLP2Q06481 763 aa8.76□□□□□ -1.01
VCAM1-202ENST00000347652 KLHL34Q8N239 644 aa8.75□□□□□ -1.01
VCAM1-202ENST00000347652 CEP164Q9UPV0 1460 aa8.74□□□□□ -1.01
VCAM1-202ENST00000347652 HOMEZQ8IX15 550 aa8.74□□□□□ -1.01
VCAM1-202ENST00000347652 PRDM2Q13029 1718 aa8.74□□□□□ -1.01
VCAM1-202ENST00000347652 MRC2Q9UBG0 1479 aa8.72□□□□□ -1.01
VCAM1-202ENST00000347652 URB2Q14146 1524 aaKnown RBP8.71□□□□□ -1.02
VCAM1-202ENST00000347652 CUX2O14529 1486 aa8.71□□□□□ -1.02
VCAM1-202ENST00000347652 WDR62O43379 1518 aa8.7□□□□□ -1.02
VCAM1-202ENST00000347652 GTF3C3Q9Y5Q9 886 aa8.69□□□□□ -1.02
VCAM1-202ENST00000347652 PODXL2Q9NZ53 605 aa8.68□□□□□ -1.02
VCAM1-202ENST00000347652 NPM3O75607 178 aaKnown RBP8.68□□□□□ -1.02
VCAM1-202ENST00000347652 FKBP8Q14318 412 aa8.68□□□□□ -1.02
VCAM1-202ENST00000347652 TOPBP1Q92547 1522 aa8.64□□□□□ -1.03
VCAM1-202ENST00000347652 RANGAP1P46060 587 aaPredicted RBP8.63□□□□□ -1.03
VCAM1-202ENST00000347652 DNMBPQ6XZF7 1577 aa8.61□□□□□ -1.03
VCAM1-202ENST00000347652 CUX1P39880 1505 aa8.61□□□□□ -1.03
VCAM1-202ENST00000347652 PPP6R1Q9UPN7 881 aa8.61□□□□□ -1.03
VCAM1-202ENST00000347652 ABCC8Q09428 1581 aa8.6□□□□□ -1.03
VCAM1-202ENST00000347652 KDM2AQ9Y2K7 1162 aa8.58□□□□□ -1.04
VCAM1-202ENST00000347652 ZNF608Q9ULD9 1512 aaPredicted RBP8.58□□□□□ -1.04
VCAM1-202ENST00000347652 POLA1P09884 1462 aaPredicted RBP8.58□□□□□ -1.04
VCAM1-202ENST00000347652 RAD54L2Q9Y4B4 1467 aa8.58□□□□□ -1.04
VCAM1-202ENST00000347652 FGD5Q6ZNL6 1462 aa8.56□□□□□ -1.04
VCAM1-202ENST00000347652 FBLN2P98095 1184 aa8.56□□□□□ -1.04
VCAM1-202ENST00000347652 SYNJ1O43426 1573 aa8.55□□□□□ -1.04
VCAM1-202ENST00000347652 TARBP1Q13395 1621 aaKnown RBP8.55□□□□□ -1.04
VCAM1-202ENST00000347652 IFT140Q96RY7 1462 aa8.54□□□□□ -1.04
VCAM1-202ENST00000347652 WRNQ14191 1432 aaPredicted RBP eCLIP8.54□□□□□ -1.04
VCAM1-202ENST00000347652 SOGA1O94964 1423 aa8.53□□□□□ -1.04
VCAM1-202ENST00000347652 AQRO60306 1485 aaKnown RBP eCLIP8.53□□□□□ -1.04
VCAM1-202ENST00000347652 TDRD9Q8NDG6 1382 aaKnown RBP8.52□□□□□ -1.05
VCAM1-202ENST00000347652 EIF4G3O43432 1585 aaKnown RBP8.51□□□□□ -1.05
VCAM1-202ENST00000347652 TOP2BQ02880 1626 aa8.51□□□□□ -1.05
VCAM1-202ENST00000347652 BIVM-ERCC5R4GMW8 1640 aa8.51□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms