RNA–Protein interactions for RNA: ENST00000343060.4

HOXA1-201, Transcript of homeobox A1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXA1, Length 2,517 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1-201ENST00000343060 NISCHQ9Y2I1 1504 aa19.01■□□□□ 0.63
HOXA1-201ENST00000343060 HRCP23327 699 aa16.34■□□□□ 0.21
HOXA1-201ENST00000343060 SHROOM4Q9ULL8 1493 aa16.32■□□□□ 0.2
HOXA1-201ENST00000343060 ZCCHC6Q5VYS8 1495 aaKnown RBP16.21■□□□□ 0.18
HOXA1-201ENST00000343060 MYO15BQ96JP2 1530 aa16.18■□□□□ 0.18
HOXA1-201ENST00000343060 SUPT5HO00267 1087 aaKnown RBP16.17■□□□□ 0.18
HOXA1-201ENST00000343060 CHIC1Q5VXU3 224 aa16.06■□□□□ 0.16
HOXA1-201ENST00000343060 CCDC180Q9P1Z9 1646 aa16.04■□□□□ 0.16
HOXA1-201ENST00000343060 DCAF1Q9Y4B6 1507 aa15.95■□□□□ 0.14
HOXA1-201ENST00000343060 PCGF6Q9BYE7 350 aa15.9■□□□□ 0.14
HOXA1-201ENST00000343060 PPARGC1BQ86YN6 1023 aaKnown RBP15.81■□□□□ 0.12
HOXA1-201ENST00000343060 PELP1Q8IZL8 1130 aaKnown RBP15.6■□□□□ 0.09
HOXA1-201ENST00000343060 TRIM26Q12899 539 aaPredicted RBP15.59■□□□□ 0.09
HOXA1-201ENST00000343060 LOC105371045A0A1W2PR82 267 aa15.51■□□□□ 0.07
HOXA1-201ENST00000343060 ZEB1P37275 1124 aaPredicted RBP15.48■□□□□ 0.07
HOXA1-201ENST00000343060 ABCC9O60706 1549 aa15.4■□□□□ 0.06
HOXA1-201ENST00000343060 DCAF8L2P0C7V8 631 aa15.31■□□□□ 0.04
HOXA1-201ENST00000343060 SCAF1Q9H7N4 1312 aaKnown RBP15.29■□□□□ 0.04
HOXA1-201ENST00000343060 RSF1Q96T23 1441 aaPredicted RBP15.18■□□□□ 0.02
HOXA1-201ENST00000343060 RB1CC1Q8TDY2 1594 aa15.13■□□□□ 0.01
HOXA1-201ENST00000343060 TRIM41Q8WV44 630 aa15.08■□□□□ 0
HOXA1-201ENST00000343060 ACIN1Q9UKV3 1341 aaKnown RBP15.01□□□□□ -0.01
HOXA1-201ENST00000343060 MYT1Q01538 1121 aa14.98□□□□□ -0.01
HOXA1-201ENST00000343060 SCRIBQ14160 1630 aa14.98□□□□□ -0.01
HOXA1-201ENST00000343060 NEUROD1Q13562 356 aa14.91□□□□□ -0.02
HOXA1-201ENST00000343060 FAM9AQ8IZU1 332 aaPredicted RBP14.89□□□□□ -0.03
HOXA1-201ENST00000343060 EIF4G1Q04637 1599 aaKnown RBP14.85□□□□□ -0.03
HOXA1-201ENST00000343060 CENPBP07199 599 aaPredicted RBP14.83□□□□□ -0.04
HOXA1-201ENST00000343060 WRNQ14191 1432 aaPredicted RBP eCLIP14.81□□□□□ -0.04
HOXA1-201ENST00000343060 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.8□□□□□ -0.04
HOXA1-201ENST00000343060 CCER1Q8TC90 406 aaPredicted RBP14.79□□□□□ -0.04
HOXA1-201ENST00000343060 GTF3C3Q9Y5Q9 886 aa14.79□□□□□ -0.04
HOXA1-201ENST00000343060 DIEXFQ68CQ4 756 aaKnown RBP14.79□□□□□ -0.04
HOXA1-201ENST00000343060 MROH2BQ7Z745 1585 aa14.77□□□□□ -0.04
HOXA1-201ENST00000343060 BAZ1AQ9NRL2 1556 aaPredicted RBP14.74□□□□□ -0.05
HOXA1-201ENST00000343060 CECR2Q9BXF3 1484 aa14.74□□□□□ -0.05
HOXA1-201ENST00000343060 WIZO95785 1651 aa14.71□□□□□ -0.05
HOXA1-201ENST00000343060 NACADO15069 1562 aa14.67□□□□□ -0.06
HOXA1-201ENST00000343060 EHMT2Q96KQ7 1210 aa14.67□□□□□ -0.06
HOXA1-201ENST00000343060 CEP162Q5TB80 1403 aa14.62□□□□□ -0.07
HOXA1-201ENST00000343060 ZNF316A6NFI3 1004 aaPredicted RBP14.59□□□□□ -0.07
HOXA1-201ENST00000343060 TNIKQ9UKE5 1360 aa14.59□□□□□ -0.07
HOXA1-201ENST00000343060 TOP2AP11388 1531 aaKnown RBP14.54□□□□□ -0.08
HOXA1-201ENST00000343060 EEA1Q15075 1411 aa14.54□□□□□ -0.08
HOXA1-201ENST00000343060 CCDC88BA6NC98 1476 aa14.53□□□□□ -0.08
HOXA1-201ENST00000343060 ABCC8Q09428 1581 aa14.51□□□□□ -0.09
HOXA1-201ENST00000343060 SMARCA2P51531 1590 aa14.47□□□□□ -0.09
HOXA1-201ENST00000343060 SOGA1O94964 1423 aa14.44□□□□□ -0.1
HOXA1-201ENST00000343060 GOLGA3Q08378 1498 aa14.43□□□□□ -0.1
HOXA1-201ENST00000343060 MIER1Q8N108 512 aa14.41□□□□□ -0.1
HOXA1-201ENST00000343060 SMARCA4P51532 1647 aa14.4□□□□□ -0.1
HOXA1-201ENST00000343060 CLSPNQ9HAW4 1339 aa14.38□□□□□ -0.11
HOXA1-201ENST00000343060 CSRNP3Q8WYN3 585 aa14.37□□□□□ -0.11
HOXA1-201ENST00000343060 YTHDC1Q96MU7 727 aaKnown RBP14.36□□□□□ -0.11
HOXA1-201ENST00000343060 KIF21BO75037 1637 aa14.35□□□□□ -0.11
HOXA1-201ENST00000343060 RUSC2Q8N2Y8 1516 aa14.35□□□□□ -0.11
HOXA1-201ENST00000343060 TTBK1Q5TCY1 1321 aaPredicted RBP14.35□□□□□ -0.11
HOXA1-201ENST00000343060 CEP164Q9UPV0 1460 aa14.3□□□□□ -0.12
HOXA1-201ENST00000343060 VPS8Q8N3P4 1428 aa14.28□□□□□ -0.12
HOXA1-201ENST00000343060 UBTFP17480 764 aaKnown RBP14.26□□□□□ -0.13
HOXA1-201ENST00000343060 BAZ1BQ9UIG0 1483 aaKnown RBP14.26□□□□□ -0.13
HOXA1-201ENST00000343060 CLIP1P30622 1438 aa14.24□□□□□ -0.13
HOXA1-201ENST00000343060 HNRNPUL2Q1KMD3 747 aaKnown RBP14.2□□□□□ -0.14
HOXA1-201ENST00000343060 SUPT16HQ9Y5B9 1047 aaKnown RBP14.19□□□□□ -0.14
HOXA1-201ENST00000343060 SYNJ1O43426 1573 aa14.18□□□□□ -0.14
HOXA1-201ENST00000343060 PEG3Q9GZU2 1588 aa14.17□□□□□ -0.14
HOXA1-201ENST00000343060 UNC13AQ9UPW8 1703 aa14.16□□□□□ -0.14
HOXA1-201ENST00000343060 DHX57Q6P158 1386 aaKnown RBP14.15□□□□□ -0.14
HOXA1-201ENST00000343060 CUX2O14529 1486 aa14.1□□□□□ -0.15
HOXA1-201ENST00000343060 RAPGEF2Q9Y4G8 1499 aa14.1□□□□□ -0.15
HOXA1-201ENST00000343060 TSHZ2Q9NRE2 1034 aa14.09□□□□□ -0.15
HOXA1-201ENST00000343060 ANP32EQ9BTT0 268 aa14.06□□□□□ -0.16
HOXA1-201ENST00000343060 APLP2Q06481 763 aa14.05□□□□□ -0.16
HOXA1-201ENST00000343060 ERICH3Q5RHP9 1530 aa14.05□□□□□ -0.16
HOXA1-201ENST00000343060 RRBP1Q9P2E9 1410 aaKnown RBP14.04□□□□□ -0.16
HOXA1-201ENST00000343060 ARAP1Q96P48 1450 aa14.02□□□□□ -0.17
HOXA1-201ENST00000343060 TOP2BQ02880 1626 aa14□□□□□ -0.17
HOXA1-201ENST00000343060 BIVM-ERCC5R4GMW8 1640 aa13.97□□□□□ -0.17
HOXA1-201ENST00000343060 PRXQ9BXM0 1461 aa13.97□□□□□ -0.17
HOXA1-201ENST00000343060 BICRAQ9NZM4 1560 aa13.95□□□□□ -0.18
HOXA1-201ENST00000343060 MAPKBP1O60336 1514 aa13.91□□□□□ -0.18
HOXA1-201ENST00000343060 ATAD2BQ9ULI0 1458 aa13.89□□□□□ -0.19
HOXA1-201ENST00000343060 CCNB3Q8WWL7 1395 aa13.88□□□□□ -0.19
HOXA1-201ENST00000343060 KANK4Q5T7N3 995 aaPredicted RBP13.88□□□□□ -0.19
HOXA1-201ENST00000343060 BCL11AQ9H165 835 aa13.87□□□□□ -0.19
HOXA1-201ENST00000343060 MAP3K1Q13233 1512 aa13.83□□□□□ -0.2
HOXA1-201ENST00000343060 KCNH8Q96L42 1107 aa13.82□□□□□ -0.2
HOXA1-201ENST00000343060 RAB3GAP2Q9H2M9 1393 aa13.8□□□□□ -0.2
HOXA1-201ENST00000343060 ARHGAP35Q9NRY4 1499 aa13.8□□□□□ -0.2
HOXA1-201ENST00000343060 WDR97A6NE52 1622 aa13.78□□□□□ -0.2
HOXA1-201ENST00000343060 FKBP8Q14318 412 aa13.77□□□□□ -0.21
HOXA1-201ENST00000343060 TIAM1Q13009 1591 aa13.76□□□□□ -0.21
HOXA1-201ENST00000343060 RANGAP1P46060 587 aaPredicted RBP13.75□□□□□ -0.21
HOXA1-201ENST00000343060 PPP1R15AO75807 674 aaPredicted RBP13.75□□□□□ -0.21
HOXA1-201ENST00000343060 CCER2I3L3R5 266 aa13.74□□□□□ -0.21
HOXA1-201ENST00000343060 RBM19Q9Y4C8 960 aaKnown RBP13.74□□□□□ -0.21
HOXA1-201ENST00000343060 SETD5Q9C0A6 1442 aa13.74□□□□□ -0.21
HOXA1-201ENST00000343060 KIF27Q86VH2 1401 aa13.74□□□□□ -0.21
HOXA1-201ENST00000343060 CUX1P39880 1505 aa13.74□□□□□ -0.21
HOXA1-201ENST00000343060 BCANQ96GW7 911 aa13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms