RNA–Protein interactions for RNA: ENST00000219299.8

CCDC113-201, Transcript of coiled-coil domain containing 113, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC113, Length 5,272 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC113-201ENST00000219299 NISCHQ9Y2I1 1504 aa18.4■□□□□ 0.54
CCDC113-201ENST00000219299 DCAF8L2P0C7V8 631 aa17.55■□□□□ 0.4
CCDC113-201ENST00000219299 SHROOM4Q9ULL8 1493 aa16.5■□□□□ 0.23
CCDC113-201ENST00000219299 SUPT5HO00267 1087 aaKnown RBP16.29■□□□□ 0.2
CCDC113-201ENST00000219299 ABCC9O60706 1549 aa15.95■□□□□ 0.14
CCDC113-201ENST00000219299 PABPN1Q86U42 306 aaKnown RBP eCLIP15.52■□□□□ 0.08
CCDC113-201ENST00000219299 CCDC180Q9P1Z9 1646 aa15.44■□□□□ 0.06
CCDC113-201ENST00000219299 EHMT2Q96KQ7 1210 aa15.43■□□□□ 0.06
CCDC113-201ENST00000219299 FAM9AQ8IZU1 332 aaPredicted RBP15.26■□□□□ 0.03
CCDC113-201ENST00000219299 ZCCHC6Q5VYS8 1495 aaKnown RBP15.25■□□□□ 0.03
CCDC113-201ENST00000219299 TRIM41Q8WV44 630 aa15.15■□□□□ 0.02
CCDC113-201ENST00000219299 SCRIBQ14160 1630 aa15.06■□□□□ 0
CCDC113-201ENST00000219299 RB1CC1Q8TDY2 1594 aa14.96□□□□□ -0.01
CCDC113-201ENST00000219299 RANGAP1P46060 587 aaPredicted RBP14.95□□□□□ -0.02
CCDC113-201ENST00000219299 NACADO15069 1562 aa14.89□□□□□ -0.03
CCDC113-201ENST00000219299 UBTFP17480 764 aaKnown RBP14.83□□□□□ -0.04
CCDC113-201ENST00000219299 APLP2Q06481 763 aa14.83□□□□□ -0.04
CCDC113-201ENST00000219299 CHIC1Q5VXU3 224 aa14.78□□□□□ -0.04
CCDC113-201ENST00000219299 TTBK1Q5TCY1 1321 aaPredicted RBP14.75□□□□□ -0.05
CCDC113-201ENST00000219299 DCAF1Q9Y4B6 1507 aa14.72□□□□□ -0.05
CCDC113-201ENST00000219299 ATP1B4Q9UN42 357 aaPredicted RBP14.7□□□□□ -0.06
CCDC113-201ENST00000219299 LOC105371045A0A1W2PR82 267 aa14.58□□□□□ -0.08
CCDC113-201ENST00000219299 PELP1Q8IZL8 1130 aaKnown RBP14.57□□□□□ -0.08
CCDC113-201ENST00000219299 RSF1Q96T23 1441 aaPredicted RBP14.51□□□□□ -0.09
CCDC113-201ENST00000219299 CECR2Q9BXF3 1484 aa14.49□□□□□ -0.09
CCDC113-201ENST00000219299 MYO15BQ96JP2 1530 aa14.47□□□□□ -0.09
CCDC113-201ENST00000219299 PPARGC1BQ86YN6 1023 aaKnown RBP14.44□□□□□ -0.1
CCDC113-201ENST00000219299 PCGF6Q9BYE7 350 aa14.42□□□□□ -0.1
CCDC113-201ENST00000219299 FBLN2P98095 1184 aa14.41□□□□□ -0.1
CCDC113-201ENST00000219299 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.38□□□□□ -0.11
CCDC113-201ENST00000219299 HNRNPUL2Q1KMD3 747 aaKnown RBP14.38□□□□□ -0.11
CCDC113-201ENST00000219299 BAZ1BQ9UIG0 1483 aaKnown RBP14.36□□□□□ -0.11
CCDC113-201ENST00000219299 BAZ1AQ9NRL2 1556 aaPredicted RBP14.36□□□□□ -0.11
CCDC113-201ENST00000219299 MYT1Q01538 1121 aa14.28□□□□□ -0.12
CCDC113-201ENST00000219299 CSRNP3Q8WYN3 585 aa14.27□□□□□ -0.13
CCDC113-201ENST00000219299 MROH2BQ7Z745 1585 aa14.27□□□□□ -0.13
CCDC113-201ENST00000219299 ITGAEP38570 1179 aa14.16□□□□□ -0.14
CCDC113-201ENST00000219299 P3H3Q8IVL6 736 aa14.15□□□□□ -0.14
CCDC113-201ENST00000219299 MYT1LQ9UL68 1186 aa14.1□□□□□ -0.15
CCDC113-201ENST00000219299 CENPBP07199 599 aaPredicted RBP14.1□□□□□ -0.15
CCDC113-201ENST00000219299 SMARCA2P51531 1590 aa14.09□□□□□ -0.15
CCDC113-201ENST00000219299 CCER1Q8TC90 406 aaPredicted RBP14.09□□□□□ -0.15
CCDC113-201ENST00000219299 ERCC6Q03468 1493 aa14.06□□□□□ -0.16
CCDC113-201ENST00000219299 ATAD2BQ9ULI0 1458 aa14.06□□□□□ -0.16
CCDC113-201ENST00000219299 WRNQ14191 1432 aaPredicted RBP eCLIP14.06□□□□□ -0.16
CCDC113-201ENST00000219299 ARID3CA6NKF2 412 aa14.06□□□□□ -0.16
CCDC113-201ENST00000219299 ZEB1P37275 1124 aaPredicted RBP14.05□□□□□ -0.16
CCDC113-201ENST00000219299 CCDC88BA6NC98 1476 aa14.04□□□□□ -0.16
CCDC113-201ENST00000219299 WIZO95785 1651 aa14.03□□□□□ -0.16
CCDC113-201ENST00000219299 TRIM26Q12899 539 aaPredicted RBP14.03□□□□□ -0.16
CCDC113-201ENST00000219299 CHMP7Q8WUX9 453 aaPredicted RBP14.01□□□□□ -0.17
CCDC113-201ENST00000219299 SMARCA4P51532 1647 aa13.99□□□□□ -0.17
CCDC113-201ENST00000219299 FAM50AQ14320 339 aaKnown RBP13.93□□□□□ -0.18
CCDC113-201ENST00000219299 CADPSQ9ULU8 1353 aa13.93□□□□□ -0.18
CCDC113-201ENST00000219299 TOP2AP11388 1531 aaKnown RBP13.92□□□□□ -0.18
CCDC113-201ENST00000219299 ERICH6Q7L0X2 663 aa13.92□□□□□ -0.18
CCDC113-201ENST00000219299 PDS5BQ9NTI5 1447 aa13.91□□□□□ -0.18
CCDC113-201ENST00000219299 EIF4G1Q04637 1599 aaKnown RBP13.91□□□□□ -0.18
CCDC113-201ENST00000219299 KIF27Q86VH2 1401 aa13.87□□□□□ -0.19
CCDC113-201ENST00000219299 NCAPD3P42695 1498 aa13.83□□□□□ -0.2
CCDC113-201ENST00000219299 ABCC8Q09428 1581 aa13.81□□□□□ -0.2
CCDC113-201ENST00000219299 BICRAQ9NZM4 1560 aa13.81□□□□□ -0.2
CCDC113-201ENST00000219299 DNAJC5BQ9UF47 199 aa13.81□□□□□ -0.2
CCDC113-201ENST00000219299 CDK11AQ9UQ88 783 aaPredicted RBP13.8□□□□□ -0.2
CCDC113-201ENST00000219299 EEA1Q15075 1411 aa13.8□□□□□ -0.2
CCDC113-201ENST00000219299 CUX2O14529 1486 aa13.79□□□□□ -0.2
CCDC113-201ENST00000219299 NPM1P06748 294 aaKnown RBP eCLIP13.79□□□□□ -0.2
CCDC113-201ENST00000219299 TDRD9Q8NDG6 1382 aaKnown RBP13.79□□□□□ -0.2
CCDC113-201ENST00000219299 SOGA1O94964 1423 aa13.78□□□□□ -0.2
CCDC113-201ENST00000219299 ZNF777Q9ULD5 760 aaPredicted RBP13.77□□□□□ -0.21
CCDC113-201ENST00000219299 CLIP1P30622 1438 aa13.73□□□□□ -0.21
CCDC113-201ENST00000219299 CC2D2AQ9P2K1 1620 aa13.72□□□□□ -0.21
CCDC113-201ENST00000219299 TRIM52Q96A61 297 aa13.72□□□□□ -0.21
CCDC113-201ENST00000219299 CARMIL1Q5VZK9 1371 aa13.72□□□□□ -0.21
CCDC113-201ENST00000219299 FANCD2Q9BXW9 1451 aa13.72□□□□□ -0.21
CCDC113-201ENST00000219299 CEP164Q9UPV0 1460 aa13.71□□□□□ -0.21
CCDC113-201ENST00000219299 GOLGA3Q08378 1498 aa13.7□□□□□ -0.22
CCDC113-201ENST00000219299 HRCP23327 699 aa13.69□□□□□ -0.22
CCDC113-201ENST00000219299 CEP162Q5TB80 1403 aa13.64□□□□□ -0.23
CCDC113-201ENST00000219299 KCNH8Q96L42 1107 aa13.63□□□□□ -0.23
CCDC113-201ENST00000219299 NESP48681 1621 aa13.61□□□□□ -0.23
CCDC113-201ENST00000219299 MTUS2Q5JR59 1369 aa13.61□□□□□ -0.23
CCDC113-201ENST00000219299 TNIKQ9UKE5 1360 aa13.61□□□□□ -0.23
CCDC113-201ENST00000219299 NEFLP07196 543 aa13.61□□□□□ -0.23
CCDC113-201ENST00000219299 UNC13AQ9UPW8 1703 aa13.58□□□□□ -0.24
CCDC113-201ENST00000219299 PLEKHD1A6NEE1 506 aa13.57□□□□□ -0.24
CCDC113-201ENST00000219299 NEUROD1Q13562 356 aa13.56□□□□□ -0.24
CCDC113-201ENST00000219299 YTHDC1Q96MU7 727 aaKnown RBP13.56□□□□□ -0.24
CCDC113-201ENST00000219299 HMGXB3Q12766 1538 aa13.55□□□□□ -0.24
CCDC113-201ENST00000219299 POLR3GLQ9BT43 218 aa13.55□□□□□ -0.24
CCDC113-201ENST00000219299 CFTRP13569 1480 aa13.54□□□□□ -0.24
CCDC113-201ENST00000219299 CHIC2Q9UKJ5 165 aa13.54□□□□□ -0.24
CCDC113-201ENST00000219299 RUSC2Q8N2Y8 1516 aa13.51□□□□□ -0.25
CCDC113-201ENST00000219299 RAD54L2Q9Y4B4 1467 aa13.5□□□□□ -0.25
CCDC113-201ENST00000219299 FGD5Q6ZNL6 1462 aa13.5□□□□□ -0.25
CCDC113-201ENST00000219299 TSPY4P0CV99 314 aa13.48□□□□□ -0.25
CCDC113-201ENST00000219299 TSPY10P0CW01 314 aa13.48□□□□□ -0.25
CCDC113-201ENST00000219299 ZNF326Q5BKZ1 582 aaKnown RBP13.46□□□□□ -0.25
CCDC113-201ENST00000219299 JPH4Q96JJ6 628 aa13.45□□□□□ -0.26
CCDC113-201ENST00000219299 CNGB1Q14028 1251 aaPredicted RBP13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms