RNA–Protein interactions for RNA: ENST00000183605.9

CLDN18-201, Transcript of claudin 18, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CLDN18, Length 3,520 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN18-201ENST00000183605 NISCHQ9Y2I1 1504 aa18.64■□□□□ 0.57
CLDN18-201ENST00000183605 CCDC180Q9P1Z9 1646 aa17.24■□□□□ 0.35
CLDN18-201ENST00000183605 HRCP23327 699 aa16.76■□□□□ 0.27
CLDN18-201ENST00000183605 SUPT5HO00267 1087 aaKnown RBP16.74■□□□□ 0.27
CLDN18-201ENST00000183605 PCGF6Q9BYE7 350 aa16.66■□□□□ 0.26
CLDN18-201ENST00000183605 SHROOM4Q9ULL8 1493 aa16.61■□□□□ 0.25
CLDN18-201ENST00000183605 PPARGC1BQ86YN6 1023 aaKnown RBP16.54■□□□□ 0.24
CLDN18-201ENST00000183605 PELP1Q8IZL8 1130 aaKnown RBP16.51■□□□□ 0.23
CLDN18-201ENST00000183605 MYO15BQ96JP2 1530 aa16.19■□□□□ 0.18
CLDN18-201ENST00000183605 CHIC1Q5VXU3 224 aa16.1■□□□□ 0.17
CLDN18-201ENST00000183605 DCAF8L2P0C7V8 631 aa15.97■□□□□ 0.15
CLDN18-201ENST00000183605 DCAF1Q9Y4B6 1507 aa15.96■□□□□ 0.15
CLDN18-201ENST00000183605 MYT1Q01538 1121 aa15.94■□□□□ 0.14
CLDN18-201ENST00000183605 TRIM26Q12899 539 aaPredicted RBP15.93■□□□□ 0.14
CLDN18-201ENST00000183605 LOC105371045A0A1W2PR82 267 aa15.92■□□□□ 0.14
CLDN18-201ENST00000183605 NACADO15069 1562 aa15.92■□□□□ 0.14
CLDN18-201ENST00000183605 ZEB1P37275 1124 aaPredicted RBP15.91■□□□□ 0.14
CLDN18-201ENST00000183605 SCAF1Q9H7N4 1312 aaKnown RBP15.9■□□□□ 0.14
CLDN18-201ENST00000183605 RB1CC1Q8TDY2 1594 aa15.83■□□□□ 0.12
CLDN18-201ENST00000183605 ABCC9O60706 1549 aa15.79■□□□□ 0.12
CLDN18-201ENST00000183605 UNC13AQ9UPW8 1703 aa15.78■□□□□ 0.12
CLDN18-201ENST00000183605 EHMT2Q96KQ7 1210 aa15.7■□□□□ 0.1
CLDN18-201ENST00000183605 CENPBP07199 599 aaPredicted RBP15.67■□□□□ 0.1
CLDN18-201ENST00000183605 ZCCHC6Q5VYS8 1495 aaKnown RBP15.64■□□□□ 0.09
CLDN18-201ENST00000183605 GTF3C3Q9Y5Q9 886 aa15.59■□□□□ 0.09
CLDN18-201ENST00000183605 ACIN1Q9UKV3 1341 aaKnown RBP15.59■□□□□ 0.09
CLDN18-201ENST00000183605 FAM9AQ8IZU1 332 aaPredicted RBP15.58■□□□□ 0.08
CLDN18-201ENST00000183605 NEUROD1Q13562 356 aa15.52■□□□□ 0.08
CLDN18-201ENST00000183605 CCER1Q8TC90 406 aaPredicted RBP15.51■□□□□ 0.07
CLDN18-201ENST00000183605 BICRAQ9NZM4 1560 aa15.49■□□□□ 0.07
CLDN18-201ENST00000183605 YTHDC1Q96MU7 727 aaKnown RBP15.43■□□□□ 0.06
CLDN18-201ENST00000183605 DIEXFQ68CQ4 756 aaKnown RBP15.4■□□□□ 0.06
CLDN18-201ENST00000183605 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.39■□□□□ 0.05
CLDN18-201ENST00000183605 TRIM41Q8WV44 630 aa15.38■□□□□ 0.05
CLDN18-201ENST00000183605 TTBK1Q5TCY1 1321 aaPredicted RBP15.32■□□□□ 0.04
CLDN18-201ENST00000183605 ZNF316A6NFI3 1004 aaPredicted RBP15□□□□□ -0.01
CLDN18-201ENST00000183605 MIER1Q8N108 512 aa14.9□□□□□ -0.02
CLDN18-201ENST00000183605 EIF4G1Q04637 1599 aaKnown RBP14.88□□□□□ -0.03
CLDN18-201ENST00000183605 SCRIBQ14160 1630 aa14.86□□□□□ -0.03
CLDN18-201ENST00000183605 PEG3Q9GZU2 1588 aa14.85□□□□□ -0.03
CLDN18-201ENST00000183605 BCL11AQ9H165 835 aa14.82□□□□□ -0.04
CLDN18-201ENST00000183605 HNRNPUL2Q1KMD3 747 aaKnown RBP14.8□□□□□ -0.04
CLDN18-201ENST00000183605 CC2D2AQ9P2K1 1620 aa14.8□□□□□ -0.04
CLDN18-201ENST00000183605 ANP32EQ9BTT0 268 aa14.77□□□□□ -0.04
CLDN18-201ENST00000183605 UBTFP17480 764 aaKnown RBP14.73□□□□□ -0.05
CLDN18-201ENST00000183605 BCANQ96GW7 911 aa14.72□□□□□ -0.05
CLDN18-201ENST00000183605 HMGXB3Q12766 1538 aa14.68□□□□□ -0.06
CLDN18-201ENST00000183605 SMARCA2P51531 1590 aa14.68□□□□□ -0.06
CLDN18-201ENST00000183605 APLP2Q06481 763 aa14.67□□□□□ -0.06
CLDN18-201ENST00000183605 SUPT16HQ9Y5B9 1047 aaKnown RBP14.67□□□□□ -0.06
CLDN18-201ENST00000183605 ERICH6Q7L0X2 663 aa14.64□□□□□ -0.07
CLDN18-201ENST00000183605 CLSPNQ9HAW4 1339 aa14.61□□□□□ -0.07
CLDN18-201ENST00000183605 CSRNP3Q8WYN3 585 aa14.61□□□□□ -0.07
CLDN18-201ENST00000183605 NEFLP07196 543 aa14.61□□□□□ -0.07
CLDN18-201ENST00000183605 TSHZ2Q9NRE2 1034 aa14.6□□□□□ -0.07
CLDN18-201ENST00000183605 SMARCA4P51532 1647 aa14.6□□□□□ -0.07
CLDN18-201ENST00000183605 RANGAP1P46060 587 aaPredicted RBP14.58□□□□□ -0.07
CLDN18-201ENST00000183605 RSF1Q96T23 1441 aaPredicted RBP14.55□□□□□ -0.08
CLDN18-201ENST00000183605 DNAJC5BQ9UF47 199 aa14.54□□□□□ -0.08
CLDN18-201ENST00000183605 NCAPD3P42695 1498 aa14.54□□□□□ -0.08
CLDN18-201ENST00000183605 FKBP8Q14318 412 aa14.5□□□□□ -0.09
CLDN18-201ENST00000183605 BAZ1AQ9NRL2 1556 aaPredicted RBP14.49□□□□□ -0.09
CLDN18-201ENST00000183605 CECR2Q9BXF3 1484 aa14.44□□□□□ -0.1
CLDN18-201ENST00000183605 PRDM2Q13029 1718 aa14.43□□□□□ -0.1
CLDN18-201ENST00000183605 CEP162Q5TB80 1403 aa14.4□□□□□ -0.1
CLDN18-201ENST00000183605 ITGAEP38570 1179 aa14.38□□□□□ -0.11
CLDN18-201ENST00000183605 ATAD2BQ9ULI0 1458 aa14.35□□□□□ -0.11
CLDN18-201ENST00000183605 RBM19Q9Y4C8 960 aaKnown RBP14.35□□□□□ -0.11
CLDN18-201ENST00000183605 PABPN1Q86U42 306 aaKnown RBP eCLIP14.3□□□□□ -0.12
CLDN18-201ENST00000183605 LAMC3Q9Y6N6 1575 aa14.29□□□□□ -0.12
CLDN18-201ENST00000183605 THOC2Q8NI27 1593 aaKnown RBP14.26□□□□□ -0.13
CLDN18-201ENST00000183605 TRIM52Q96A61 297 aa14.26□□□□□ -0.13
CLDN18-201ENST00000183605 CDK11AQ9UQ88 783 aaPredicted RBP14.25□□□□□ -0.13
CLDN18-201ENST00000183605 WRNQ14191 1432 aaPredicted RBP eCLIP14.25□□□□□ -0.13
CLDN18-201ENST00000183605 KCNH8Q96L42 1107 aa14.24□□□□□ -0.13
CLDN18-201ENST00000183605 TNIKQ9UKE5 1360 aa14.24□□□□□ -0.13
CLDN18-201ENST00000183605 DDX10Q13206 875 aaKnown RBP14.23□□□□□ -0.13
CLDN18-201ENST00000183605 CUX2O14529 1486 aa14.23□□□□□ -0.13
CLDN18-201ENST00000183605 MROH2BQ7Z745 1585 aa14.17□□□□□ -0.14
CLDN18-201ENST00000183605 IRX6P78412 446 aaPredicted RBP14.15□□□□□ -0.14
CLDN18-201ENST00000183605 SOGA1O94964 1423 aa14.15□□□□□ -0.14
CLDN18-201ENST00000183605 ANP32CO43423 234 aa14.15□□□□□ -0.14
CLDN18-201ENST00000183605 PRKCSHP14314 528 aaPredicted RBP14.15□□□□□ -0.14
CLDN18-201ENST00000183605 TOP2AP11388 1531 aaKnown RBP14.13□□□□□ -0.15
CLDN18-201ENST00000183605 NBR1Q14596 966 aa14.12□□□□□ -0.15
CLDN18-201ENST00000183605 CCDC88BA6NC98 1476 aa14.1□□□□□ -0.15
CLDN18-201ENST00000183605 DEKP35659 375 aaKnown RBP14.1□□□□□ -0.15
CLDN18-201ENST00000183605 HIRIP3Q9BW71 556 aaPredicted RBP14.09□□□□□ -0.15
CLDN18-201ENST00000183605 MYT1LQ9UL68 1186 aa14.09□□□□□ -0.15
CLDN18-201ENST00000183605 RTL5Q5HYW3 569 aaPredicted RBP14.08□□□□□ -0.15
CLDN18-201ENST00000183605 CLIP1P30622 1438 aa14.08□□□□□ -0.15
CLDN18-201ENST00000183605 KIF21AQ7Z4S6 1674 aa14.07□□□□□ -0.16
CLDN18-201ENST00000183605 GOLGA3Q08378 1498 aa14.06□□□□□ -0.16
CLDN18-201ENST00000183605 WDR62O43379 1518 aa14.06□□□□□ -0.16
CLDN18-201ENST00000183605 BAZ1BQ9UIG0 1483 aaKnown RBP14.06□□□□□ -0.16
CLDN18-201ENST00000183605 ABCC8Q09428 1581 aa14.05□□□□□ -0.16
CLDN18-201ENST00000183605 WIZO95785 1651 aa14.05□□□□□ -0.16
CLDN18-201ENST00000183605 MSH5O43196 834 aa14.04□□□□□ -0.16
CLDN18-201ENST00000183605 HNRNPUQ00839 825 aaKnown RBP eCLIP14.04□□□□□ -0.16
CLDN18-201ENST00000183605 DHX57Q6P158 1386 aaKnown RBP14.02□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms