RNA–Protein interactions for RNA: ENSMUST00000121963.2

Col6a4-201, Transcript of Collagen alpha-4(VI) chain, mousemouse

APPRIS P1 TSL 5 BASIC

Gene Col6a4, Length 7,371 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a4-201ENSMUST00000121963 Rhox8Q6VSS7 320 aa19.65■□□□□ 0.74
Col6a4-201ENSMUST00000121963 Esf1Q3V1V3 845 aaKnown RBP17.79■□□□□ 0.44
Col6a4-201ENSMUST00000121963 Ube2uB1AUC4 352 aa17.69■□□□□ 0.42
Col6a4-201ENSMUST00000121963 Zeb1Q64318 1117 aa17.67■□□□□ 0.42
Col6a4-201ENSMUST00000121963 Cngb1E1AZ71 1325 aa17.55■□□□□ 0.4
Col6a4-201ENSMUST00000121963 Npm2Q80W85 207 aa17.31■□□□□ 0.36
Col6a4-201ENSMUST00000121963 Ccdc136Q3TVA9 1136 aa17.29■□□□□ 0.36
Col6a4-201ENSMUST00000121963 Ehmt2Q9Z148 1263 aaKnown RBP17.18■□□□□ 0.34
Col6a4-201ENSMUST00000121963 Myt1lP97500 1187 aa17.03■□□□□ 0.32
Col6a4-201ENSMUST00000121963 Gab3Q8BSM5 595 aa17.01■□□□□ 0.31
Col6a4-201ENSMUST00000121963 Wdr66E9Q743 1299 aa16.95■□□□□ 0.3
Col6a4-201ENSMUST00000121963 Las1lA2BE28 776 aaKnown RBP16.91■□□□□ 0.3
Col6a4-201ENSMUST00000121963 Trim41Q5NCC3 630 aa16.75■□□□□ 0.27
Col6a4-201ENSMUST00000121963 Il27Q8K3I6 234 aa16.68■□□□□ 0.26
Col6a4-201ENSMUST00000121963 Pelp1Q9DBD5 1123 aaKnown RBP16.64■□□□□ 0.25
Col6a4-201ENSMUST00000121963 Os9Q8K2C7 672 aa16.43■□□□□ 0.22
Col6a4-201ENSMUST00000121963 Rpgrip1Q9EPQ2 1331 aa16.42■□□□□ 0.22
Col6a4-201ENSMUST00000121963 Slc24a1Q91WD8 1130 aa16.37■□□□□ 0.21
Col6a4-201ENSMUST00000121963 Plppr3Q7TPB0 716 aa16.33■□□□□ 0.21
Col6a4-201ENSMUST00000121963 Gm13697A2AK42 830 aa16.33■□□□□ 0.2
Col6a4-201ENSMUST00000121963 Ifnlr1Q8CGK5 535 aa16.3■□□□□ 0.2
Col6a4-201ENSMUST00000121963 UbtfP25976 765 aaKnown RBP16.25■□□□□ 0.19
Col6a4-201ENSMUST00000121963 Gm35339A0A140LHH9 1649 aa16.24■□□□□ 0.19
Col6a4-201ENSMUST00000121963 Ttbk1Q6PCN3 1308 aa16.23■□□□□ 0.19
Col6a4-201ENSMUST00000121963 HrcG5E8J6 738 aa16.23■□□□□ 0.19
Col6a4-201ENSMUST00000121963 NischQ80TM9 1593 aa16.21■□□□□ 0.18
Col6a4-201ENSMUST00000121963 Ap3b1Q9Z1T1 1105 aa16.2■□□□□ 0.18
Col6a4-201ENSMUST00000121963 Abcc9P70170 1546 aa16.16■□□□□ 0.18
Col6a4-201ENSMUST00000121963 Neurod1Q60867 357 aa16.11■□□□□ 0.17
Col6a4-201ENSMUST00000121963 Zbtb7cQ8VCZ7 619 aa16.08■□□□□ 0.16
Col6a4-201ENSMUST00000121963 Chic1Q8CBW7 227 aa16.03■□□□□ 0.16
Col6a4-201ENSMUST00000121963 Fam50aQ9WV03 339 aaKnown RBP16.01■□□□□ 0.15
Col6a4-201ENSMUST00000121963 Atp1b4Q99ME6 356 aa15.97■□□□□ 0.15
Col6a4-201ENSMUST00000121963 Gm13695A2AK44 830 aa15.94■□□□□ 0.14
Col6a4-201ENSMUST00000121963 Amer1Q7TS75 1132 aa15.94■□□□□ 0.14
Col6a4-201ENSMUST00000121963 Anp32bQ9EST5 272 aaKnown RBP15.92■□□□□ 0.14
Col6a4-201ENSMUST00000121963 Hnrnpul2Q00PI9 745 aaKnown RBP15.91■□□□□ 0.14
Col6a4-201ENSMUST00000121963 NclP09405 707 aaKnown RBP15.9■□□□□ 0.14
Col6a4-201ENSMUST00000121963 Npm1Q61937 292 aaKnown RBP15.89■□□□□ 0.13
Col6a4-201ENSMUST00000121963 Stra8P70278 393 aa15.85■□□□□ 0.13
Col6a4-201ENSMUST00000121963 Zcchc6Q5BLK4 1491 aaKnown RBP15.81■□□□□ 0.12
Col6a4-201ENSMUST00000121963 DiexfQ8BTT6 772 aaKnown RBP15.8■□□□□ 0.12
Col6a4-201ENSMUST00000121963 Erich6D3Z6S9 713 aa15.77■□□□□ 0.12
Col6a4-201ENSMUST00000121963 NrdcQ8BHG1 1161 aa15.74■□□□□ 0.11
Col6a4-201ENSMUST00000121963 Safb2Q80YR5 991 aaKnown RBP15.73■□□□□ 0.11
Col6a4-201ENSMUST00000121963 Fkbp15Q6P9Q6 1216 aaKnown RBP15.71■□□□□ 0.11
Col6a4-201ENSMUST00000121963 NeflP08551 543 aa15.65■□□□□ 0.1
Col6a4-201ENSMUST00000121963 Eif5bQ05D44 1216 aaKnown RBP15.59■□□□□ 0.09
Col6a4-201ENSMUST00000121963 Zbtb4Q5F293 982 aa15.57■□□□□ 0.08
Col6a4-201ENSMUST00000121963 Prdm10Q3UTQ7 1184 aa15.56■□□□□ 0.08
Col6a4-201ENSMUST00000121963 Lmod2Q3UHZ5 550 aa15.53■□□□□ 0.08
Col6a4-201ENSMUST00000121963 NefmP08553 848 aa15.52■□□□□ 0.08
Col6a4-201ENSMUST00000121963 4930567H17RikQ3V0K5 233 aa15.51■□□□□ 0.07
Col6a4-201ENSMUST00000121963 Acin1Q9JIX8 1338 aaKnown RBP15.43■□□□□ 0.06
Col6a4-201ENSMUST00000121963 Nlrp6Q91WS2 869 aa15.42■□□□□ 0.06
Col6a4-201ENSMUST00000121963 Ubl4bQ9CQ84 188 aa15.38■□□□□ 0.05
Col6a4-201ENSMUST00000121963 Polr3glQ8R0C0 218 aa15.34■□□□□ 0.05
Col6a4-201ENSMUST00000121963 MyclP10166 368 aa15.33■□□□□ 0.04
Col6a4-201ENSMUST00000121963 P3h3Q8CG70 732 aa15.33■□□□□ 0.04
Col6a4-201ENSMUST00000121963 4933416C03RikQ3V063 378 aa15.32■□□□□ 0.04
Col6a4-201ENSMUST00000121963 Rtl1Q7M732 1744 aa15.32■□□□□ 0.04
Col6a4-201ENSMUST00000121963 Ccdc180J3QNE4 1664 aa15.32■□□□□ 0.04
Col6a4-201ENSMUST00000121963 Cdk11bP24788 784 aaKnown RBP15.29■□□□□ 0.04
Col6a4-201ENSMUST00000121963 CenpbP27790 599 aa15.29■□□□□ 0.04
Col6a4-201ENSMUST00000121963 Hdac5Q9Z2V6 1113 aa15.27■□□□□ 0.04
Col6a4-201ENSMUST00000121963 Ppargc1bQ8VHJ7 1014 aa15.24■□□□□ 0.03
Col6a4-201ENSMUST00000121963 Rangap1P46061 589 aaKnown RBP15.17■□□□□ 0.02
Col6a4-201ENSMUST00000121963 Plekhg3Q4VAC9 1341 aa15.14■□□□□ 0.01
Col6a4-201ENSMUST00000121963 TonslQ6NZL6 1363 aa15.09■□□□□ 0.01
Col6a4-201ENSMUST00000121963 Ggt6Q6PDE7 497 aa15.02■□□□□ -0
Col6a4-201ENSMUST00000121963 Irx6Q9ER75 438 aa15.02□□□□□ -0.01
Col6a4-201ENSMUST00000121963 Znf326O88291 580 aa14.99□□□□□ -0.01
Col6a4-201ENSMUST00000121963 Ppp1r18Q8BQ30 594 aa14.96□□□□□ -0.01
Col6a4-201ENSMUST00000121963 Tnnt3Q9QZ47 272 aa14.92□□□□□ -0.02
Col6a4-201ENSMUST00000121963 ArxO35085 564 aa14.9□□□□□ -0.02
Col6a4-201ENSMUST00000121963 MlecQ6ZQI3 291 aaKnown RBP14.9□□□□□ -0.02
Col6a4-201ENSMUST00000121963 NgefQ8CHT1 710 aa14.89□□□□□ -0.03
Col6a4-201ENSMUST00000121963 Nop58Q6DFW4 536 aaKnown RBP14.86□□□□□ -0.03
Col6a4-201ENSMUST00000121963 Ythdc1E9Q5K9 736 aaKnown RBP14.86□□□□□ -0.03
Col6a4-201ENSMUST00000121963 Rtn4Q99P72 1162 aaKnown RBP14.85□□□□□ -0.03
Col6a4-201ENSMUST00000121963 Hsp90aa1P07901 733 aaKnown RBP14.84□□□□□ -0.03
Col6a4-201ENSMUST00000121963 Fgd1P52734 960 aa14.81□□□□□ -0.04
Col6a4-201ENSMUST00000121963 Chic2Q9D9G3 165 aa14.79□□□□□ -0.04
Col6a4-201ENSMUST00000121963 Arhgap27A2AB59 869 aa14.78□□□□□ -0.04
Col6a4-201ENSMUST00000121963 Q8BT18 775 aa14.77□□□□□ -0.04
Col6a4-201ENSMUST00000121963 Clstn2Q9ER65 966 aa14.76□□□□□ -0.05
Col6a4-201ENSMUST00000121963 Clstn1Q9EPL2 979 aa14.75□□□□□ -0.05
Col6a4-201ENSMUST00000121963 Aplp2Q06335 707 aa14.74□□□□□ -0.05
Col6a4-201ENSMUST00000121963 Ercc6F8VPZ5 1481 aa14.74□□□□□ -0.05
Col6a4-201ENSMUST00000121963 IqubQ8CDK3 788 aa14.74□□□□□ -0.05
Col6a4-201ENSMUST00000121963 Mapk8ip2Q9ERE9 830 aa14.73□□□□□ -0.05
Col6a4-201ENSMUST00000121963 Ppm1fQ8CGA0 452 aa14.72□□□□□ -0.05
Col6a4-201ENSMUST00000121963 Ecm2Q5FW85 670 aa14.71□□□□□ -0.05
Col6a4-201ENSMUST00000121963 Ubap1lG3UW59 384 aa14.71□□□□□ -0.06
Col6a4-201ENSMUST00000121963 Mier1Q5UAK0 511 aa14.71□□□□□ -0.06
Col6a4-201ENSMUST00000121963 Trim26Q99PN3 545 aa14.68□□□□□ -0.06
Col6a4-201ENSMUST00000121963 Brd4Q9ESU6 1400 aaKnown RBP14.68□□□□□ -0.06
Col6a4-201ENSMUST00000121963 Clip1Q922J3 1391 aa14.67□□□□□ -0.06
Col6a4-201ENSMUST00000121963 Rad21Q61550 635 aaKnown RBP14.64□□□□□ -0.07
Col6a4-201ENSMUST00000121963 Eid3Q3V124 375 aa14.64□□□□□ -0.07
Retrieved 100 of 22,080 RNA–protein pairs in 232.5 ms