RNA–Protein interactions for RNA: ENSMUST00000108908.5

Scn8a-203, Transcript of Sodium channel protein type 8 subunit alpha, mousemouse

APPRIS ALT1 TSL 5 BASIC

Gene Scn8a, Length 7,030 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Scn8a-203ENSMUST00000108908 Rhox8Q6VSS7 320 aa19.86■□□□□ 0.77
Scn8a-203ENSMUST00000108908 Ehmt2Q9Z148 1263 aaKnown RBP17.95■□□□□ 0.46
Scn8a-203ENSMUST00000108908 Ccdc136Q3TVA9 1136 aa17.76■□□□□ 0.43
Scn8a-203ENSMUST00000108908 Cngb1E1AZ71 1325 aa17.64■□□□□ 0.41
Scn8a-203ENSMUST00000108908 Esf1Q3V1V3 845 aaKnown RBP17.63■□□□□ 0.41
Scn8a-203ENSMUST00000108908 Rpgrip1Q9EPQ2 1331 aa17.61■□□□□ 0.41
Scn8a-203ENSMUST00000108908 NischQ80TM9 1593 aa17.59■□□□□ 0.41
Scn8a-203ENSMUST00000108908 Gab3Q8BSM5 595 aa17.35■□□□□ 0.37
Scn8a-203ENSMUST00000108908 Wdr66E9Q743 1299 aa17.27■□□□□ 0.36
Scn8a-203ENSMUST00000108908 Zeb1Q64318 1117 aa17.26■□□□□ 0.35
Scn8a-203ENSMUST00000108908 Ube2uB1AUC4 352 aa17.25■□□□□ 0.35
Scn8a-203ENSMUST00000108908 Npm2Q80W85 207 aa17.2■□□□□ 0.34
Scn8a-203ENSMUST00000108908 Las1lA2BE28 776 aaKnown RBP17.2■□□□□ 0.34
Scn8a-203ENSMUST00000108908 Trim41Q5NCC3 630 aa17.18■□□□□ 0.34
Scn8a-203ENSMUST00000108908 Myt1lP97500 1187 aa17.1■□□□□ 0.33
Scn8a-203ENSMUST00000108908 Rtl1Q7M732 1744 aa16.75■□□□□ 0.27
Scn8a-203ENSMUST00000108908 Ccdc180J3QNE4 1664 aa16.74■□□□□ 0.27
Scn8a-203ENSMUST00000108908 UbtfP25976 765 aaKnown RBP16.7■□□□□ 0.26
Scn8a-203ENSMUST00000108908 Il27Q8K3I6 234 aa16.57■□□□□ 0.24
Scn8a-203ENSMUST00000108908 Pelp1Q9DBD5 1123 aaKnown RBP16.56■□□□□ 0.24
Scn8a-203ENSMUST00000108908 Abcc9P70170 1546 aa16.55■□□□□ 0.24
Scn8a-203ENSMUST00000108908 Gm35339A0A140LHH9 1649 aa16.54■□□□□ 0.24
Scn8a-203ENSMUST00000108908 Acin1Q9JIX8 1338 aaKnown RBP16.49■□□□□ 0.23
Scn8a-203ENSMUST00000108908 Slc24a1Q91WD8 1130 aa16.42■□□□□ 0.22
Scn8a-203ENSMUST00000108908 Zcchc6Q5BLK4 1491 aaKnown RBP16.42■□□□□ 0.22
Scn8a-203ENSMUST00000108908 NefmP08553 848 aa16.38■□□□□ 0.21
Scn8a-203ENSMUST00000108908 Ap3b1Q9Z1T1 1105 aa16.37■□□□□ 0.21
Scn8a-203ENSMUST00000108908 HrcG5E8J6 738 aa16.23■□□□□ 0.19
Scn8a-203ENSMUST00000108908 Fam50aQ9WV03 339 aaKnown RBP16.19■□□□□ 0.18
Scn8a-203ENSMUST00000108908 Stra8P70278 393 aa16.17■□□□□ 0.18
Scn8a-203ENSMUST00000108908 Neurod1Q60867 357 aa16.15■□□□□ 0.18
Scn8a-203ENSMUST00000108908 CenpbP27790 599 aa16.11■□□□□ 0.17
Scn8a-203ENSMUST00000108908 Ppargc1bQ8VHJ7 1014 aa16.05■□□□□ 0.16
Scn8a-203ENSMUST00000108908 NclP09405 707 aaKnown RBP16.02■□□□□ 0.15
Scn8a-203ENSMUST00000108908 Amer1Q7TS75 1132 aa16.01■□□□□ 0.15
Scn8a-203ENSMUST00000108908 Os9Q8K2C7 672 aa15.98■□□□□ 0.15
Scn8a-203ENSMUST00000108908 Cdk11bP24788 784 aaKnown RBP15.96■□□□□ 0.15
Scn8a-203ENSMUST00000108908 NrdcQ8BHG1 1161 aa15.9■□□□□ 0.14
Scn8a-203ENSMUST00000108908 Eif5bQ05D44 1216 aaKnown RBP15.9■□□□□ 0.14
Scn8a-203ENSMUST00000108908 Abcc8B2RUS7 1588 aa15.9■□□□□ 0.14
Scn8a-203ENSMUST00000108908 Pcgf6Q99NA9 353 aa15.9■□□□□ 0.14
Scn8a-203ENSMUST00000108908 Zbtb7cQ8VCZ7 619 aa15.85■□□□□ 0.13
Scn8a-203ENSMUST00000108908 Anp32bQ9EST5 272 aaKnown RBP15.83■□□□□ 0.13
Scn8a-203ENSMUST00000108908 TonslQ6NZL6 1363 aa15.83■□□□□ 0.12
Scn8a-203ENSMUST00000108908 Nop58Q6DFW4 536 aaKnown RBP15.81■□□□□ 0.12
Scn8a-203ENSMUST00000108908 Npm1Q61937 292 aaKnown RBP15.81■□□□□ 0.12
Scn8a-203ENSMUST00000108908 Lmod2Q3UHZ5 550 aa15.79■□□□□ 0.12
Scn8a-203ENSMUST00000108908 Mier1Q5UAK0 511 aa15.79■□□□□ 0.12
Scn8a-203ENSMUST00000108908 Plekhg3Q4VAC9 1341 aa15.75■□□□□ 0.11
Scn8a-203ENSMUST00000108908 Ttbk1Q6PCN3 1308 aa15.75■□□□□ 0.11
Scn8a-203ENSMUST00000108908 Supt5hO55201 1082 aaKnown RBP15.74■□□□□ 0.11
Scn8a-203ENSMUST00000108908 Ifnlr1Q8CGK5 535 aa15.72■□□□□ 0.11
Scn8a-203ENSMUST00000108908 NeflP08551 543 aa15.72■□□□□ 0.11
Scn8a-203ENSMUST00000108908 Hnrnpul2Q00PI9 745 aaKnown RBP15.65■□□□□ 0.1
Scn8a-203ENSMUST00000108908 Tnnt3Q9QZ47 272 aa15.65■□□□□ 0.1
Scn8a-203ENSMUST00000108908 Rb1cc1Q9ESK9 1588 aa15.61■□□□□ 0.09
Scn8a-203ENSMUST00000108908 Zbtb4Q5F293 982 aa15.58■□□□□ 0.09
Scn8a-203ENSMUST00000108908 Chic1Q8CBW7 227 aa15.58■□□□□ 0.08
Scn8a-203ENSMUST00000108908 4933416C03RikQ3V063 378 aa15.57■□□□□ 0.08
Scn8a-203ENSMUST00000108908 Gm13697A2AK42 830 aa15.54■□□□□ 0.08
Scn8a-203ENSMUST00000108908 Erich6D3Z6S9 713 aa15.52■□□□□ 0.08
Scn8a-203ENSMUST00000108908 Brd4Q9ESU6 1400 aaKnown RBP15.49■□□□□ 0.07
Scn8a-203ENSMUST00000108908 Fkbp15Q6P9Q6 1216 aaKnown RBP15.49■□□□□ 0.07
Scn8a-203ENSMUST00000108908 Atp1b4Q99ME6 356 aa15.47■□□□□ 0.07
Scn8a-203ENSMUST00000108908 Mapk8ip2Q9ERE9 830 aa15.47■□□□□ 0.07
Scn8a-203ENSMUST00000108908 Prdm10Q3UTQ7 1184 aa15.43■□□□□ 0.06
Scn8a-203ENSMUST00000108908 Eid3Q3V124 375 aa15.4■□□□□ 0.06
Scn8a-203ENSMUST00000108908 Clip1Q922J3 1391 aa15.39■□□□□ 0.05
Scn8a-203ENSMUST00000108908 Ubl4bQ9CQ84 188 aa15.37■□□□□ 0.05
Scn8a-203ENSMUST00000108908 ClspnQ80YR7 1315 aa15.37■□□□□ 0.05
Scn8a-203ENSMUST00000108908 Plppr3Q7TPB0 716 aa15.37■□□□□ 0.05
Scn8a-203ENSMUST00000108908 Dcaf1Q80TR8 1506 aa15.35■□□□□ 0.05
Scn8a-203ENSMUST00000108908 Nlrp6Q91WS2 869 aa15.35■□□□□ 0.05
Scn8a-203ENSMUST00000108908 Polr3glQ8R0C0 218 aa15.28■□□□□ 0.04
Scn8a-203ENSMUST00000108908 Cep164Q5DU05 1446 aa15.28■□□□□ 0.04
Scn8a-203ENSMUST00000108908 Gm13695A2AK44 830 aa15.28■□□□□ 0.04
Scn8a-203ENSMUST00000108908 4930567H17RikQ3V0K5 233 aa15.22■□□□□ 0.03
Scn8a-203ENSMUST00000108908 Chic2Q9D9G3 165 aa15.19■□□□□ 0.02
Scn8a-203ENSMUST00000108908 NacadQ5SWP3 1504 aa15.15■□□□□ 0.02
Scn8a-203ENSMUST00000108908 Myt1Q8CFC2 1127 aa15.13■□□□□ 0.01
Scn8a-203ENSMUST00000108908 Gm38655A0A286YDK6 273 aa15.12■□□□□ 0.01
Scn8a-203ENSMUST00000108908 Csrnp3P59055 597 aa15.12■□□□□ 0.01
Scn8a-203ENSMUST00000108908 Hdac5Q9Z2V6 1113 aa15.12■□□□□ 0.01
Scn8a-203ENSMUST00000108908 BlmO88700 1416 aa15.11■□□□□ 0.01
Scn8a-203ENSMUST00000108908 Rangap1P46061 589 aaKnown RBP15.11■□□□□ 0.01
Scn8a-203ENSMUST00000108908 Sall2Q9QX96 1004 aa15.11■□□□□ 0.01
Scn8a-203ENSMUST00000108908 ArxO35085 564 aa15.1■□□□□ 0.01
Scn8a-203ENSMUST00000108908 Anp32aO35381 247 aa15.08■□□□□ 0
Scn8a-203ENSMUST00000108908 Rtl5Q5DTT4 599 aa15.08■□□□□ 0
Scn8a-203ENSMUST00000108908 Baz1aO88379 1555 aa15.07■□□□□ 0
Scn8a-203ENSMUST00000108908 Ccer2J3QPU5 274 aa15.02■□□□□ -0
Scn8a-203ENSMUST00000108908 DaxxO35613 739 aa15.02■□□□□ -0
Scn8a-203ENSMUST00000108908 Rad21Q61550 635 aaKnown RBP14.99□□□□□ -0.01
Scn8a-203ENSMUST00000108908 Setd5Q5XJV7 1441 aa14.96□□□□□ -0.01
Scn8a-203ENSMUST00000108908 Kif15Q6P9L6 1387 aa14.96□□□□□ -0.02
Scn8a-203ENSMUST00000108908 Safb2Q80YR5 991 aaKnown RBP14.94□□□□□ -0.02
Scn8a-203ENSMUST00000108908 P3h3Q8CG70 732 aa14.94□□□□□ -0.02
Scn8a-203ENSMUST00000108908 Ercc6F8VPZ5 1481 aa14.93□□□□□ -0.02
Scn8a-203ENSMUST00000108908 Golga3P55937 1487 aa14.89□□□□□ -0.03
Scn8a-203ENSMUST00000108908 Kdm5dQ62240 1548 aa14.88□□□□□ -0.03
Retrieved 100 of 22,080 RNA–protein pairs in 800.1 ms