RNA–Protein interactions for RNA: ENSMUST00000088171.10

Rtn3-204, Transcript of Reticulon-3, mousemouse

TSL 1 (best) BASIC

Gene Rtn3, Length 4,973 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Rtn3-204ENSMUST00000088171 Rhox8Q6VSS7 320 aa18.83■□□□□ 0.61
Rtn3-204ENSMUST00000088171 Esf1Q3V1V3 845 aaKnown RBP16.89■□□□□ 0.3
Rtn3-204ENSMUST00000088171 Zeb1Q64318 1117 aa16.77■□□□□ 0.27
Rtn3-204ENSMUST00000088171 Ube2uB1AUC4 352 aa16.72■□□□□ 0.27
Rtn3-204ENSMUST00000088171 Cngb1E1AZ71 1325 aa16.55■□□□□ 0.24
Rtn3-204ENSMUST00000088171 Npm2Q80W85 207 aa16.45■□□□□ 0.22
Rtn3-204ENSMUST00000088171 NischQ80TM9 1593 aa16.43■□□□□ 0.22
Rtn3-204ENSMUST00000088171 Ccdc136Q3TVA9 1136 aa16.4■□□□□ 0.22
Rtn3-204ENSMUST00000088171 Trim41Q5NCC3 630 aa16.27■□□□□ 0.19
Rtn3-204ENSMUST00000088171 Las1lA2BE28 776 aaKnown RBP16.19■□□□□ 0.18
Rtn3-204ENSMUST00000088171 Gab3Q8BSM5 595 aa16.13■□□□□ 0.17
Rtn3-204ENSMUST00000088171 Myt1lP97500 1187 aa16.12■□□□□ 0.17
Rtn3-204ENSMUST00000088171 Rpgrip1Q9EPQ2 1331 aa16.07■□□□□ 0.16
Rtn3-204ENSMUST00000088171 Pelp1Q9DBD5 1123 aaKnown RBP16.07■□□□□ 0.16
Rtn3-204ENSMUST00000088171 Wdr66E9Q743 1299 aa16.05■□□□□ 0.16
Rtn3-204ENSMUST00000088171 Ehmt2Q9Z148 1263 aaKnown RBP16■□□□□ 0.15
Rtn3-204ENSMUST00000088171 Abcc9P70170 1546 aa15.89■□□□□ 0.13
Rtn3-204ENSMUST00000088171 Il27Q8K3I6 234 aa15.79■□□□□ 0.12
Rtn3-204ENSMUST00000088171 Os9Q8K2C7 672 aa15.53■□□□□ 0.08
Rtn3-204ENSMUST00000088171 Anp32bQ9EST5 272 aaKnown RBP15.46■□□□□ 0.07
Rtn3-204ENSMUST00000088171 Gm13697A2AK42 830 aa15.44■□□□□ 0.06
Rtn3-204ENSMUST00000088171 Stra8P70278 393 aa15.42■□□□□ 0.06
Rtn3-204ENSMUST00000088171 UbtfP25976 765 aaKnown RBP15.4■□□□□ 0.06
Rtn3-204ENSMUST00000088171 Gm35339A0A140LHH9 1649 aa15.35■□□□□ 0.05
Rtn3-204ENSMUST00000088171 Slc24a1Q91WD8 1130 aa15.35■□□□□ 0.05
Rtn3-204ENSMUST00000088171 NclP09405 707 aaKnown RBP15.34■□□□□ 0.05
Rtn3-204ENSMUST00000088171 Npm1Q61937 292 aaKnown RBP15.32■□□□□ 0.04
Rtn3-204ENSMUST00000088171 Zcchc6Q5BLK4 1491 aaKnown RBP15.24■□□□□ 0.03
Rtn3-204ENSMUST00000088171 Fam50aQ9WV03 339 aaKnown RBP15.24■□□□□ 0.03
Rtn3-204ENSMUST00000088171 HrcG5E8J6 738 aa15.23■□□□□ 0.03
Rtn3-204ENSMUST00000088171 Ttbk1Q6PCN3 1308 aa15.2■□□□□ 0.02
Rtn3-204ENSMUST00000088171 NefmP08553 848 aa15.19■□□□□ 0.02
Rtn3-204ENSMUST00000088171 Neurod1Q60867 357 aa15.18■□□□□ 0.02
Rtn3-204ENSMUST00000088171 Ifnlr1Q8CGK5 535 aa15.16■□□□□ 0.02
Rtn3-204ENSMUST00000088171 NrdcQ8BHG1 1161 aa15.14■□□□□ 0.01
Rtn3-204ENSMUST00000088171 Abcc8B2RUS7 1588 aa15.14■□□□□ 0.01
Rtn3-204ENSMUST00000088171 Ap3b1Q9Z1T1 1105 aa15.14■□□□□ 0.01
Rtn3-204ENSMUST00000088171 Gm13695A2AK44 830 aa15.09■□□□□ 0.01
Rtn3-204ENSMUST00000088171 Hnrnpul2Q00PI9 745 aaKnown RBP15.08■□□□□ 0
Rtn3-204ENSMUST00000088171 Plppr3Q7TPB0 716 aa15.08■□□□□ 0
Rtn3-204ENSMUST00000088171 Amer1Q7TS75 1132 aa15.06■□□□□ 0
Rtn3-204ENSMUST00000088171 NeflP08551 543 aa15.02□□□□□ -0.01
Rtn3-204ENSMUST00000088171 Zbtb7cQ8VCZ7 619 aa15.01□□□□□ -0.01
Rtn3-204ENSMUST00000088171 Atp1b4Q99ME6 356 aa15□□□□□ -0.01
Rtn3-204ENSMUST00000088171 Ubl4bQ9CQ84 188 aa15□□□□□ -0.01
Rtn3-204ENSMUST00000088171 DiexfQ8BTT6 772 aaKnown RBP14.98□□□□□ -0.01
Rtn3-204ENSMUST00000088171 4930567H17RikQ3V0K5 233 aa14.97□□□□□ -0.01
Rtn3-204ENSMUST00000088171 NacadQ5SWP3 1504 aa14.95□□□□□ -0.02
Rtn3-204ENSMUST00000088171 Ercc6F8VPZ5 1481 aa14.94□□□□□ -0.02
Rtn3-204ENSMUST00000088171 Hdac5Q9Z2V6 1113 aa14.9□□□□□ -0.02
Rtn3-204ENSMUST00000088171 Chic1Q8CBW7 227 aa14.89□□□□□ -0.03
Rtn3-204ENSMUST00000088171 CenpbP27790 599 aa14.85□□□□□ -0.03
Rtn3-204ENSMUST00000088171 Safb2Q80YR5 991 aaKnown RBP14.85□□□□□ -0.03
Rtn3-204ENSMUST00000088171 Erich6D3Z6S9 713 aa14.84□□□□□ -0.03
Rtn3-204ENSMUST00000088171 Fkbp15Q6P9Q6 1216 aaKnown RBP14.8□□□□□ -0.04
Rtn3-204ENSMUST00000088171 Brd4Q9ESU6 1400 aaKnown RBP14.76□□□□□ -0.05
Rtn3-204ENSMUST00000088171 Lmod2Q3UHZ5 550 aa14.75□□□□□ -0.05
Rtn3-204ENSMUST00000088171 Pds5bQ4VA53 1446 aaKnown RBP14.73□□□□□ -0.05
Rtn3-204ENSMUST00000088171 Rb1cc1Q9ESK9 1588 aa14.68□□□□□ -0.06
Rtn3-204ENSMUST00000088171 Eif5bQ05D44 1216 aaKnown RBP14.65□□□□□ -0.06
Rtn3-204ENSMUST00000088171 Nlrp6Q91WS2 869 aa14.63□□□□□ -0.07
Rtn3-204ENSMUST00000088171 Acin1Q9JIX8 1338 aaKnown RBP14.58□□□□□ -0.08
Rtn3-204ENSMUST00000088171 4933416C03RikQ3V063 378 aa14.58□□□□□ -0.08
Rtn3-204ENSMUST00000088171 Cdk11bP24788 784 aaKnown RBP14.58□□□□□ -0.08
Rtn3-204ENSMUST00000088171 Tnnt3Q9QZ47 272 aa14.56□□□□□ -0.08
Rtn3-204ENSMUST00000088171 Zbtb4Q5F293 982 aa14.55□□□□□ -0.08
Rtn3-204ENSMUST00000088171 Prdm10Q3UTQ7 1184 aa14.54□□□□□ -0.08
Rtn3-204ENSMUST00000088171 Rsf1E9PWW9 1441 aaKnown RBP14.51□□□□□ -0.09
Rtn3-204ENSMUST00000088171 Rtl1Q7M732 1744 aa14.48□□□□□ -0.09
Rtn3-204ENSMUST00000088171 TonslQ6NZL6 1363 aa14.47□□□□□ -0.09
Rtn3-204ENSMUST00000088171 Cep164Q5DU05 1446 aa14.46□□□□□ -0.1
Rtn3-204ENSMUST00000088171 Clstn2Q9ER65 966 aa14.42□□□□□ -0.1
Rtn3-204ENSMUST00000088171 Polr3glQ8R0C0 218 aa14.42□□□□□ -0.1
Rtn3-204ENSMUST00000088171 Ccdc18Q640L5 1455 aa14.38□□□□□ -0.11
Rtn3-204ENSMUST00000088171 P3h3Q8CG70 732 aa14.38□□□□□ -0.11
Rtn3-204ENSMUST00000088171 Plekhg3Q4VAC9 1341 aa14.37□□□□□ -0.11
Rtn3-204ENSMUST00000088171 Nop58Q6DFW4 536 aaKnown RBP14.36□□□□□ -0.11
Rtn3-204ENSMUST00000088171 MyclP10166 368 aa14.34□□□□□ -0.11
Rtn3-204ENSMUST00000088171 Ccdc180J3QNE4 1664 aa14.34□□□□□ -0.11
Rtn3-204ENSMUST00000088171 Dcaf1Q80TR8 1506 aa14.31□□□□□ -0.12
Rtn3-204ENSMUST00000088171 Kif15Q6P9L6 1387 aa14.29□□□□□ -0.12
Rtn3-204ENSMUST00000088171 Znf326O88291 580 aa14.26□□□□□ -0.13
Rtn3-204ENSMUST00000088171 Ccer2J3QPU5 274 aa14.24□□□□□ -0.13
Rtn3-204ENSMUST00000088171 Ppargc1bQ8VHJ7 1014 aa14.22□□□□□ -0.13
Rtn3-204ENSMUST00000088171 Phldb1Q6PDH0 1371 aaKnown RBP14.22□□□□□ -0.13
Rtn3-204ENSMUST00000088171 Ggt6Q6PDE7 497 aa14.17□□□□□ -0.14
Rtn3-204ENSMUST00000088171 Rsph4aQ8BYM7 716 aa14.17□□□□□ -0.14
Rtn3-204ENSMUST00000088171 Baz1aO88379 1555 aa14.17□□□□□ -0.14
Rtn3-204ENSMUST00000088171 Ppp1r18Q8BQ30 594 aa14.16□□□□□ -0.14
Rtn3-204ENSMUST00000088171 Kdm5dQ62240 1548 aa14.15□□□□□ -0.14
Rtn3-204ENSMUST00000088171 Hsp90aa1P07901 733 aaKnown RBP14.13□□□□□ -0.15
Rtn3-204ENSMUST00000088171 Pabpn1Q8CCS6 302 aaKnown RBP14.13□□□□□ -0.15
Rtn3-204ENSMUST00000088171 Fgd1P52734 960 aa14.13□□□□□ -0.15
Rtn3-204ENSMUST00000088171 Clip1Q922J3 1391 aa14.12□□□□□ -0.15
Rtn3-204ENSMUST00000088171 IqubQ8CDK3 788 aa14.11□□□□□ -0.15
Rtn3-204ENSMUST00000088171 Atad2bE9Q166 1460 aaKnown RBP14.1□□□□□ -0.15
Rtn3-204ENSMUST00000088171 Rangap1P46061 589 aaKnown RBP14.1□□□□□ -0.15
Rtn3-204ENSMUST00000088171 Sycp2Q9CUU3 1500 aa14.09□□□□□ -0.15
Rtn3-204ENSMUST00000088171 Zfp777B9EKF4 885 aa14.08□□□□□ -0.16
Rtn3-204ENSMUST00000088171 Mier1Q5UAK0 511 aa14.06□□□□□ -0.16
Retrieved 100 of 22,080 RNA–protein pairs in 14.3 ms