RNA–Protein interactions for RNA: ENSMUST00000022646.8

Nkx3-1-201, Transcript of Homeobox protein Nkx-3.1, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Nkx3-1, Length 3,195 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1-201ENSMUST00000022646 NischQ80TM9 1593 aa29.02■■■□□ 2.24
Nkx3-1-201ENSMUST00000022646 Gm35339A0A140LHH9 1649 aa28.42■■■□□ 2.14
Nkx3-1-201ENSMUST00000022646 Abcc9P70170 1546 aa28.17■■■□□ 2.1
Nkx3-1-201ENSMUST00000022646 Abcc8B2RUS7 1588 aa27.52■■■□□ 2
Nkx3-1-201ENSMUST00000022646 Rhox8Q6VSS7 320 aa27.05■■□□□ 1.92
Nkx3-1-201ENSMUST00000022646 Rtl1Q7M732 1744 aa26.62■■□□□ 1.85
Nkx3-1-201ENSMUST00000022646 Ccdc180J3QNE4 1664 aa26.18■■□□□ 1.78
Nkx3-1-201ENSMUST00000022646 Zcchc6Q5BLK4 1491 aaKnown RBP25.7■■□□□ 1.7
Nkx3-1-201ENSMUST00000022646 Dcaf1Q80TR8 1506 aa25.64■■□□□ 1.7
Nkx3-1-201ENSMUST00000022646 ScribQ80U72 1612 aa25.62■■□□□ 1.69
Nkx3-1-201ENSMUST00000022646 Rb1cc1Q9ESK9 1588 aa25.44■■□□□ 1.66
Nkx3-1-201ENSMUST00000022646 Kdm5dQ62240 1548 aa25.18■■□□□ 1.62
Nkx3-1-201ENSMUST00000022646 Baz1aO88379 1555 aa25.13■■□□□ 1.61
Nkx3-1-201ENSMUST00000022646 Ccdc136Q3TVA9 1136 aa25.08■■□□□ 1.61
Nkx3-1-201ENSMUST00000022646 HrcG5E8J6 738 aa24.94■■□□□ 1.58
Nkx3-1-201ENSMUST00000022646 NacadQ5SWP3 1504 aa24.94■■□□□ 1.58
Nkx3-1-201ENSMUST00000022646 Rpgrip1Q9EPQ2 1331 aa24.84■■□□□ 1.57
Nkx3-1-201ENSMUST00000022646 Crybg2B7ZCC2 1516 aa24.6■■□□□ 1.53
Nkx3-1-201ENSMUST00000022646 Smarca2Q6DIC0 1577 aa24.57■■□□□ 1.52
Nkx3-1-201ENSMUST00000022646 Acin1Q9JIX8 1338 aaKnown RBP24.52■■□□□ 1.52
Nkx3-1-201ENSMUST00000022646 Trim41Q5NCC3 630 aa24.52■■□□□ 1.52
Nkx3-1-201ENSMUST00000022646 Ehmt2Q9Z148 1263 aaKnown RBP24.51■■□□□ 1.51
Nkx3-1-201ENSMUST00000022646 Sycp2Q9CUU3 1500 aa24.4■■□□□ 1.5
Nkx3-1-201ENSMUST00000022646 Cep164Q5DU05 1446 aa24.21■■□□□ 1.47
Nkx3-1-201ENSMUST00000022646 Brd4Q9ESU6 1400 aaKnown RBP24■■□□□ 1.43
Nkx3-1-201ENSMUST00000022646 Cecr2E9Q2Z1 1453 aa23.99■■□□□ 1.43
Nkx3-1-201ENSMUST00000022646 Cngb1E1AZ71 1325 aa23.98■■□□□ 1.43
Nkx3-1-201ENSMUST00000022646 Rsf1E9PWW9 1441 aaKnown RBP23.9■■□□□ 1.42
Nkx3-1-201ENSMUST00000022646 Chic1Q8CBW7 227 aa23.88■■□□□ 1.41
Nkx3-1-201ENSMUST00000022646 BicraF8VPZ9 1578 aa23.85■■□□□ 1.41
Nkx3-1-201ENSMUST00000022646 Synj1Q8CHC4 1574 aa23.81■■□□□ 1.4
Nkx3-1-201ENSMUST00000022646 Golga3P55937 1487 aa23.79■■□□□ 1.4
Nkx3-1-201ENSMUST00000022646 Gab3Q8BSM5 595 aa23.75■■□□□ 1.39
Nkx3-1-201ENSMUST00000022646 Ccdc88bQ4QRL3 1481 aa23.74■■□□□ 1.39
Nkx3-1-201ENSMUST00000022646 CftrP26361 1476 aa23.64■■□□□ 1.37
Nkx3-1-201ENSMUST00000022646 Esf1Q3V1V3 845 aaKnown RBP23.58■■□□□ 1.37
Nkx3-1-201ENSMUST00000022646 Pcgf6Q99NA9 353 aa23.52■■□□□ 1.36
Nkx3-1-201ENSMUST00000022646 Cttnbp2B9EJA2 1648 aa23.49■■□□□ 1.35
Nkx3-1-201ENSMUST00000022646 Top2bQ64511 1612 aa23.48■■□□□ 1.35
Nkx3-1-201ENSMUST00000022646 Smarca4Q3TKT4 1613 aaKnown RBP23.37■■□□□ 1.33
Nkx3-1-201ENSMUST00000022646 Cc2d2aQ8CFW7 1633 aa23.29■■□□□ 1.32
Nkx3-1-201ENSMUST00000022646 Supt5hO55201 1082 aaKnown RBP23.19■■□□□ 1.3
Nkx3-1-201ENSMUST00000022646 Mier1Q5UAK0 511 aa23.15■■□□□ 1.3
Nkx3-1-201ENSMUST00000022646 Fmn1Q05860 1466 aa23.13■■□□□ 1.29
Nkx3-1-201ENSMUST00000022646 Rapgef2Q8CHG7 1496 aa23.09■■□□□ 1.29
Nkx3-1-201ENSMUST00000022646 NefmP08553 848 aa23.08■■□□□ 1.29
Nkx3-1-201ENSMUST00000022646 Iqgap2Q3UQ44 1575 aa23.06■■□□□ 1.28
Nkx3-1-201ENSMUST00000022646 Top2aQ01320 1528 aaKnown RBP23.06■■□□□ 1.28
Nkx3-1-201ENSMUST00000022646 Zeb1Q64318 1117 aa23■■□□□ 1.27
Nkx3-1-201ENSMUST00000022646 Cep162Q6ZQ06 1403 aa22.91■■□□□ 1.26
Nkx3-1-201ENSMUST00000022646 Atad2bE9Q166 1460 aaKnown RBP22.89■■□□□ 1.25
Nkx3-1-201ENSMUST00000022646 UbtfP25976 765 aaKnown RBP22.87■■□□□ 1.25
Nkx3-1-201ENSMUST00000022646 Myt1lP97500 1187 aa22.87■■□□□ 1.25
Nkx3-1-201ENSMUST00000022646 Npm2Q80W85 207 aa22.79■■□□□ 1.24
Nkx3-1-201ENSMUST00000022646 Pds5bQ4VA53 1446 aaKnown RBP22.75■■□□□ 1.23
Nkx3-1-201ENSMUST00000022646 TnnQ80Z71 1560 aa22.69■■□□□ 1.22
Nkx3-1-201ENSMUST00000022646 Eif4g1Q6NZJ6 1600 aaKnown RBP22.67■■□□□ 1.22
Nkx3-1-201ENSMUST00000022646 Sall2Q9QX96 1004 aa22.63■■□□□ 1.21
Nkx3-1-201ENSMUST00000022646 Clip1Q922J3 1391 aa22.61■■□□□ 1.21
Nkx3-1-201ENSMUST00000022646 Frmpd1A2AKB4 1549 aa22.59■■□□□ 1.21
Nkx3-1-201ENSMUST00000022646 Wdr62Q3U3T8 1523 aa22.56■■□□□ 1.2
Nkx3-1-201ENSMUST00000022646 Neurod1Q60867 357 aa22.53■■□□□ 1.2
Nkx3-1-201ENSMUST00000022646 Plekhg3Q4VAC9 1341 aa22.52■■□□□ 1.2
Nkx3-1-201ENSMUST00000022646 Las1lA2BE28 776 aaKnown RBP22.5■■□□□ 1.19
Nkx3-1-201ENSMUST00000022646 Arhgap35Q91YM2 1499 aa22.5■■□□□ 1.19
Nkx3-1-201ENSMUST00000022646 PtprkP35822 1457 aa22.49■■□□□ 1.19
Nkx3-1-201ENSMUST00000022646 Lamc3Q9R0B6 1581 aa22.48■■□□□ 1.19
Nkx3-1-201ENSMUST00000022646 Il27Q8K3I6 234 aa22.45■■□□□ 1.18
Nkx3-1-201ENSMUST00000022646 NrkQ9R0G8 1455 aa22.44■■□□□ 1.18
Nkx3-1-201ENSMUST00000022646 Kif15Q6P9L6 1387 aa22.43■■□□□ 1.18
Nkx3-1-201ENSMUST00000022646 Wdr66E9Q743 1299 aa22.4■■□□□ 1.18
Nkx3-1-201ENSMUST00000022646 Aebp2Q9Z248 504 aaKnown RBP22.4■■□□□ 1.18
Nkx3-1-201ENSMUST00000022646 Ercc6F8VPZ5 1481 aa22.38■■□□□ 1.17
Nkx3-1-201ENSMUST00000022646 Ncapd3Q6ZQK0 1506 aa22.35■■□□□ 1.17
Nkx3-1-201ENSMUST00000022646 Unc13aQ4KUS2 1712 aa22.34■■□□□ 1.17
Nkx3-1-201ENSMUST00000022646 Eea1Q8BL66 1411 aa22.34■■□□□ 1.17
Nkx3-1-201ENSMUST00000022646 Shroom4Q1W617 1475 aa22.34■■□□□ 1.17
Nkx3-1-201ENSMUST00000022646 Camsap1A2AHC3 1581 aa22.34■■□□□ 1.17
Nkx3-1-201ENSMUST00000022646 Arap1Q4LDD4 1452 aa22.33■■□□□ 1.16
Nkx3-1-201ENSMUST00000022646 TonslQ6NZL6 1363 aa22.29■■□□□ 1.16
Nkx3-1-201ENSMUST00000022646 Ap3b1Q9Z1T1 1105 aa22.27■■□□□ 1.16
Nkx3-1-201ENSMUST00000022646 Setd5Q5XJV7 1441 aa22.25■■□□□ 1.15
Nkx3-1-201ENSMUST00000022646 Map3k1P53349 1493 aa22.24■■□□□ 1.15
Nkx3-1-201ENSMUST00000022646 ClspnQ80YR7 1315 aa22.24■■□□□ 1.15
Nkx3-1-201ENSMUST00000022646 Arhgef5E9Q7D5 1581 aa22.23■■□□□ 1.15
Nkx3-1-201ENSMUST00000022646 Ccdc18Q640L5 1455 aa22.21■■□□□ 1.15
Nkx3-1-201ENSMUST00000022646 Grin2bQ01097 1482 aa22.2■■□□□ 1.14
Nkx3-1-201ENSMUST00000022646 Ppargc1bQ8VHJ7 1014 aa22.13■■□□□ 1.13
Nkx3-1-201ENSMUST00000022646 Mroh2bQ7M6Y6 1581 aa22.13■■□□□ 1.13
Nkx3-1-201ENSMUST00000022646 Baz1bQ9Z277 1479 aa22.1■■□□□ 1.13
Nkx3-1-201ENSMUST00000022646 Tiam1Q60610 1591 aa22.09■■□□□ 1.13
Nkx3-1-201ENSMUST00000022646 Ankrd26Q811D2 1581 aa22.04■■□□□ 1.12
Nkx3-1-201ENSMUST00000022646 Anks4bQ8K3X6 423 aa22.04■■□□□ 1.12
Nkx3-1-201ENSMUST00000022646 Phldb1Q6PDH0 1371 aaKnown RBP22.04■■□□□ 1.12
Nkx3-1-201ENSMUST00000022646 Kdm5bQ80Y84 1544 aa22.03■■□□□ 1.12
Nkx3-1-201ENSMUST00000022646 Erich3F6QRE9 1637 aa22.03■■□□□ 1.12
Nkx3-1-201ENSMUST00000022646 Cux2P70298 1426 aa22.02■■□□□ 1.12
Nkx3-1-201ENSMUST00000022646 Naip1Q9QWK5 1403 aa22.01■■□□□ 1.11
Nkx3-1-201ENSMUST00000022646 Nop58Q6DFW4 536 aaKnown RBP22■■□□□ 1.11
Nkx3-1-201ENSMUST00000022646 BlmO88700 1416 aa22■■□□□ 1.11
Retrieved 100 of 22,080 RNA–protein pairs in 12.6 ms