RNA–Protein interactions for RNA: ENST00000620676.4

VPS13D-214, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VPS13D, Length 16,320 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-214ENST00000620676 TRAFD1O14545 582 aaPredicted RBP4.96□□□□□ -1.62
VPS13D-214ENST00000620676 DLX3O60479 287 aa4.96□□□□□ -1.62
VPS13D-214ENST00000620676 APOC2P02655 101 aa4.96□□□□□ -1.62
VPS13D-214ENST00000620676 PSMA1P25786 263 aaKnown RBP4.96□□□□□ -1.62
VPS13D-214ENST00000620676 BUD31P41223 144 aaPredicted RBP4.96□□□□□ -1.62
VPS13D-214ENST00000620676 CSKP41240 450 aa4.96□□□□□ -1.62
VPS13D-214ENST00000620676 NR2C2P49116 596 aa4.96□□□□□ -1.62
VPS13D-214ENST00000620676 UGT2B15P54855 530 aa4.96□□□□□ -1.62
VPS13D-214ENST00000620676 DYRK1AQ13627 763 aa4.96□□□□□ -1.62
VPS13D-214ENST00000620676 SGCDQ92629 289 aa4.96□□□□□ -1.62
VPS13D-214ENST00000620676 PEX13Q92968 403 aa4.96□□□□□ -1.62
VPS13D-214ENST00000620676 TSSK3Q96PN8 268 aa4.96□□□□□ -1.62
VPS13D-214ENST00000620676 BBS4Q96RK4 519 aa4.96□□□□□ -1.62
VPS13D-214ENST00000620676 TMPRSS4Q9NRS4 437 aa4.96□□□□□ -1.62
VPS13D-214ENST00000620676 ZNF223Q9UK11 482 aaPredicted RBP4.96□□□□□ -1.62
VPS13D-214ENST00000620676 FEM1BQ9UK73 627 aa4.96□□□□□ -1.62
VPS13D-214ENST00000620676 VIRMAQ69YN4 1812 aaKnown RBP4.96□□□□□ -1.62
VPS13D-214ENST00000620676 ARAP3Q8WWN8 1544 aa4.96□□□□□ -1.62
VPS13D-214ENST00000620676 CARNS1A5YM72 827 aa4.96□□□□□ -1.62
VPS13D-214ENST00000620676 OGTO15294 1046 aa4.96□□□□□ -1.62
VPS13D-214ENST00000620676 SNAPC2Q13487 334 aa4.96□□□□□ -1.62
VPS13D-214ENST00000620676 HMGN2P46Q86SG4 172 aa4.96□□□□□ -1.62
VPS13D-214ENST00000620676 SLC51AQ86UW1 340 aa4.96□□□□□ -1.62
VPS13D-214ENST00000620676 OR5K1Q8NHB7 308 aa4.96□□□□□ -1.62
VPS13D-214ENST00000620676 WASHC1A8K0Z3 465 aa4.96□□□□□ -1.62
VPS13D-214ENST00000620676 ZNF705GA8MUZ8 300 aaPredicted RBP4.96□□□□□ -1.62
VPS13D-214ENST00000620676 TYROBPO43914 113 aa4.96□□□□□ -1.62
VPS13D-214ENST00000620676 DAG1Q14118 895 aa4.96□□□□□ -1.62
VPS13D-214ENST00000620676 C6orf141Q5SZD1 244 aa4.96□□□□□ -1.62
VPS13D-214ENST00000620676 LRRN1Q6UXK5 716 aa4.96□□□□□ -1.62
VPS13D-214ENST00000620676 KCTD9Q7L273 389 aa4.96□□□□□ -1.62
VPS13D-214ENST00000620676 ASB9Q96DX5 294 aa4.96□□□□□ -1.62
VPS13D-214ENST00000620676 SUCNR1Q9BXA5 334 aa4.96□□□□□ -1.62
VPS13D-214ENST00000620676 HOXC10Q9NYD6 342 aa4.96□□□□□ -1.62
VPS13D-214ENST00000620676 RNF11Q9Y3C5 154 aa4.96□□□□□ -1.62
VPS13D-214ENST00000620676 CEP170Q5SW79 1584 aa4.96□□□□□ -1.62
VPS13D-214ENST00000620676 ELOVL7A1L3X0 281 aa4.96□□□□□ -1.62
VPS13D-214ENST00000620676 CD8B2A6NJW9 211 aa4.96□□□□□ -1.62
VPS13D-214ENST00000620676 MT-ND2P03891 347 aa4.96□□□□□ -1.62
VPS13D-214ENST00000620676 CD8BP10966 210 aa4.96□□□□□ -1.62
VPS13D-214ENST00000620676 PVALBP20472 110 aaPredicted RBP4.96□□□□□ -1.62
VPS13D-214ENST00000620676 DDCP20711 480 aa4.96□□□□□ -1.62
VPS13D-214ENST00000620676 SOX3P41225 446 aa4.96□□□□□ -1.62
VPS13D-214ENST00000620676 POM121L1PQ3SYA9 428 aa4.96□□□□□ -1.62
VPS13D-214ENST00000620676 USP39Q53GS9 565 aaKnown RBP4.96□□□□□ -1.62
VPS13D-214ENST00000620676 ZNF362Q5T0B9 420 aaPredicted RBP4.96□□□□□ -1.62
VPS13D-214ENST00000620676 POGLUT1Q8NBL1 392 aa4.96□□□□□ -1.62
VPS13D-214ENST00000620676 ZNF675Q8TD23 568 aa4.96□□□□□ -1.62
VPS13D-214ENST00000620676 SNRNP25Q9BV90 132 aaKnown RBP4.96□□□□□ -1.62
VPS13D-214ENST00000620676 PPA2Q9H2U2 334 aa4.96□□□□□ -1.62
VPS13D-214ENST00000620676 TPT1P8Q9HAU6 139 aa4.96□□□□□ -1.62
VPS13D-214ENST00000620676 AGO4Q9HCK5 861 aaKnown RBP4.96□□□□□ -1.62
VPS13D-214ENST00000620676 PDGFCQ9NRA1 345 aa4.96□□□□□ -1.62
VPS13D-214ENST00000620676 HIF3AQ9Y2N7 669 aa4.96□□□□□ -1.62
VPS13D-214ENST00000620676 SPDEFO95238 335 aa4.96□□□□□ -1.62
VPS13D-214ENST00000620676 GSRP00390 522 aa4.96□□□□□ -1.62
VPS13D-214ENST00000620676 CYP11A1P05108 521 aa4.96□□□□□ -1.62
VPS13D-214ENST00000620676 TAGLNQ01995 201 aaKnown RBP4.96□□□□□ -1.62
VPS13D-214ENST00000620676 GRIK5Q16478 980 aa4.96□□□□□ -1.62
VPS13D-214ENST00000620676 SPATS1Q496A3 300 aa4.96□□□□□ -1.62
VPS13D-214ENST00000620676 LAPTM4BQ86VI4 370 aa4.96□□□□□ -1.62
VPS13D-214ENST00000620676 DCP2Q8IU60 420 aaKnown RBP4.96□□□□□ -1.62
VPS13D-214ENST00000620676 OR5T3Q8NGG3 340 aa4.96□□□□□ -1.62
VPS13D-214ENST00000620676 OR6C2Q9NZP2 312 aa4.96□□□□□ -1.62
VPS13D-214ENST00000620676 MAN2B2Q9Y2E5 1009 aa4.96□□□□□ -1.62
VPS13D-214ENST00000620676 PSAT1Q9Y617 370 aa4.96□□□□□ -1.62
VPS13D-214ENST00000620676 SIX6O95475 246 aa4.96□□□□□ -1.62
VPS13D-214ENST00000620676 CPN2P22792 545 aa4.96□□□□□ -1.62
VPS13D-214ENST00000620676 CREB5Q02930 508 aa4.96□□□□□ -1.62
VPS13D-214ENST00000620676 COMTD1Q86VU5 262 aa4.96□□□□□ -1.62
VPS13D-214ENST00000620676 HOPXQ9BPY8 73 aaPredicted RBP4.96□□□□□ -1.62
VPS13D-214ENST00000620676 LTB4R2Q9NPC1 389 aa4.96□□□□□ -1.62
VPS13D-214ENST00000620676 FKBP7Q9Y680 259 aa4.96□□□□□ -1.62
VPS13D-214ENST00000620676 LACTBL1A8MY62 500 aa4.96□□□□□ -1.62
VPS13D-214ENST00000620676 RFPL1O75677 317 aa4.96□□□□□ -1.62
VPS13D-214ENST00000620676 MBL2P11226 248 aaPredicted RBP4.96□□□□□ -1.62
VPS13D-214ENST00000620676 CHRNA5P30532 468 aa4.96□□□□□ -1.62
VPS13D-214ENST00000620676 HNF1BP35680 557 aa4.96□□□□□ -1.62
VPS13D-214ENST00000620676 RAB33AQ14088 237 aa4.96□□□□□ -1.62
VPS13D-214ENST00000620676 BTG3Q14201 252 aaPredicted RBP4.96□□□□□ -1.62
VPS13D-214ENST00000620676 KIAA1161Q6NSJ0 714 aa4.96□□□□□ -1.62
VPS13D-214ENST00000620676 ANKRD52Q8NB46 1076 aa4.96□□□□□ -1.62
VPS13D-214ENST00000620676 B3GNT5Q9BYG0 378 aa4.96□□□□□ -1.62
VPS13D-214ENST00000620676 TJP2Q9UDY2 1190 aa4.96□□□□□ -1.62
VPS13D-214ENST00000620676 TSPAN16Q9UKR8 245 aa4.96□□□□□ -1.62
VPS13D-214ENST00000620676 MAB21L2Q9Y586 359 aa4.96□□□□□ -1.62
VPS13D-214ENST00000620676 TFAP2AP05549 437 aa4.96□□□□□ -1.62
VPS13D-214ENST00000620676 ITPKAP23677 461 aa4.96□□□□□ -1.62
VPS13D-214ENST00000620676 CHRNA4P43681 627 aa4.96□□□□□ -1.62
VPS13D-214ENST00000620676 GSK3BP49841 420 aa4.96□□□□□ -1.62
VPS13D-214ENST00000620676 ATXN1P54253 815 aaKnown RBP4.96□□□□□ -1.62
VPS13D-214ENST00000620676 MBTPS1Q14703 1052 aa4.96□□□□□ -1.62
VPS13D-214ENST00000620676 HSD17B12Q53GQ0 312 aa4.96□□□□□ -1.62
VPS13D-214ENST00000620676 PDZD11Q5EBL8 140 aa4.96□□□□□ -1.62
VPS13D-214ENST00000620676 PIGGQ5H8A4 983 aa4.96□□□□□ -1.62
VPS13D-214ENST00000620676 EMC10Q5UCC4 262 aa4.96□□□□□ -1.62
VPS13D-214ENST00000620676 PNCKQ6P2M8 343 aa4.96□□□□□ -1.62
VPS13D-214ENST00000620676 SMARCD3Q6STE5 483 aa4.96□□□□□ -1.62
VPS13D-214ENST00000620676 SPNS2Q8IVW8 549 aa4.96□□□□□ -1.62
VPS13D-214ENST00000620676 CMIPQ8IY22 773 aa4.96□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms