RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 FGFR1OP2Q9NVK5 253 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 INTS10Q9NVR2 710 aaKnown RBP3.22□□□□□ -1.89
VPS35-208ENST00000568612 PNPOQ9NVS9 261 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 CMTM6Q9NX76 183 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 GDAP2Q9NXN4 497 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 NDE1Q9NXR1 346 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 MTMR4Q9NYA4 1195 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 VSX1Q9NZR4 365 aaPredicted RBP3.22□□□□□ -1.89
VPS35-208ENST00000568612 NYAP2Q9P242 653 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 KLHL9Q9P2J3 617 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 TXNDC16Q9P2K2 825 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 EIF3KQ9UBQ5 218 aaKnown RBP3.22□□□□□ -1.89
VPS35-208ENST00000568612 CNOT8Q9UFF9 292 aaKnown RBP3.22□□□□□ -1.89
VPS35-208ENST00000568612 CHORDC1Q9UHD1 332 aaPredicted RBP3.22□□□□□ -1.89
VPS35-208ENST00000568612 CYTH4Q9UIA0 394 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 TRMT6Q9UJA5 497 aaKnown RBP3.22□□□□□ -1.89
VPS35-208ENST00000568612 STOML2Q9UJZ1 356 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 PSME2Q9UL46 239 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 MAN2B2Q9Y2E5 1009 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 SNX24Q9Y343 169 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 INSL6Q9Y581 213 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 NFS1Q9Y697 457 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 AP1M2Q9Y6Q5 423 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 DGKBQ9Y6T7 804 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 MYH8P13535 1937 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 USP32Q8NFA0 1604 aa3.22□□□□□ -1.89
VPS35-208ENST00000568612 NEDD4P46934 1319 aa3.21□□□□□ -1.89
VPS35-208ENST00000568612 AOX1Q06278 1338 aa3.21□□□□□ -1.89
VPS35-208ENST00000568612 SPATA31A6Q5VVP1 1343 aa3.21□□□□□ -1.89
VPS35-208ENST00000568612 ZNF532Q9HCE3 1301 aa3.21□□□□□ -1.89
VPS35-208ENST00000568612 KIF13AQ9H1H9 1805 aa3.21□□□□□ -1.89
VPS35-208ENST00000568612 MYH4Q9Y623 1939 aa3.21□□□□□ -1.9
VPS35-208ENST00000568612 RIMS1Q86UR5 1692 aaKnown RBP3.21□□□□□ -1.9
VPS35-208ENST00000568612 PRAG1Q86YV5 1406 aa3.21□□□□□ -1.9
VPS35-208ENST00000568612 PPLO60437 1756 aa3.21□□□□□ -1.9
VPS35-208ENST00000568612 A0A0B4J269 797 aa3.21□□□□□ -1.9
VPS35-208ENST00000568612 A0A1W2PRG6 482 aa3.21□□□□□ -1.9
VPS35-208ENST00000568612 PQLC2LA1A4F0 135 aa3.21□□□□□ -1.9
VPS35-208ENST00000568612 MTMR11A4FU01 709 aa3.21□□□□□ -1.9
VPS35-208ENST00000568612 PRR23AA6NEV1 266 aa3.21□□□□□ -1.9
VPS35-208ENST00000568612 MEI4A8MW99 385 aa3.21□□□□□ -1.9
VPS35-208ENST00000568612 ZNF487B1APH4 448 aa3.21□□□□□ -1.9
VPS35-208ENST00000568612 F8W8V4 182 aa3.21□□□□□ -1.9
VPS35-208ENST00000568612 H0YIV9 168 aa3.21□□□□□ -1.9
VPS35-208ENST00000568612 TRIM38O00635 465 aa3.21□□□□□ -1.9
VPS35-208ENST00000568612 FPGTO14772 594 aa3.21□□□□□ -1.9
VPS35-208ENST00000568612 TP73O15350 636 aa3.21□□□□□ -1.9
VPS35-208ENST00000568612 NUPL2O15504 423 aaKnown RBP3.21□□□□□ -1.9
VPS35-208ENST00000568612 THAP12O43422 761 aa3.21□□□□□ -1.9
VPS35-208ENST00000568612 SMAD6O43541 496 aaKnown RBP3.21□□□□□ -1.9
VPS35-208ENST00000568612 ASNA1O43681 348 aa3.21□□□□□ -1.9
VPS35-208ENST00000568612 CIDEAO60543 219 aa3.21□□□□□ -1.9
VPS35-208ENST00000568612 GMDSO60547 372 aa3.21□□□□□ -1.9
VPS35-208ENST00000568612 TBX10O75333 385 aa3.21□□□□□ -1.9
VPS35-208ENST00000568612 ENTPD5O75356 428 aa3.21□□□□□ -1.9
VPS35-208ENST00000568612 BCAS1O75363 584 aaPredicted RBP3.21□□□□□ -1.9
VPS35-208ENST00000568612 CBR3O75828 277 aa3.21□□□□□ -1.9
VPS35-208ENST00000568612 CCNKO75909 580 aa3.21□□□□□ -1.9
VPS35-208ENST00000568612 MYO1DO94832 1006 aa3.21□□□□□ -1.9
VPS35-208ENST00000568612 PGM3O95394 542 aa3.21□□□□□ -1.9
VPS35-208ENST00000568612 SCGB1D2O95969 90 aa3.21□□□□□ -1.9
VPS35-208ENST00000568612 SHBGP04278 402 aa3.21□□□□□ -1.9
VPS35-208ENST00000568612 ATP1A1P05023 1023 aaKnown RBP3.21□□□□□ -1.9
VPS35-208ENST00000568612 KRT8P05787 483 aa3.21□□□□□ -1.9
VPS35-208ENST00000568612 PLEKP08567 350 aaPredicted RBP3.21□□□□□ -1.9
VPS35-208ENST00000568612 SMIM6P0DI80 62 aa3.21□□□□□ -1.9
VPS35-208ENST00000568612 CLUP10909 449 aa3.21□□□□□ -1.9
VPS35-208ENST00000568612 CDH1P12830 882 aa3.21□□□□□ -1.9
VPS35-208ENST00000568612 PRG2P13727 222 aa3.21□□□□□ -1.9
VPS35-208ENST00000568612 TRIM27P14373 513 aa3.21□□□□□ -1.9
VPS35-208ENST00000568612 TYRP14679 529 aa3.21□□□□□ -1.9
VPS35-208ENST00000568612 PPP3CBP16298 524 aa3.21□□□□□ -1.9
VPS35-208ENST00000568612 ZNF23P17027 643 aa3.21□□□□□ -1.9
VPS35-208ENST00000568612 HDCP19113 662 aa3.21□□□□□ -1.9
VPS35-208ENST00000568612 NCF2P19878 526 aaPredicted RBP3.21□□□□□ -1.9
VPS35-208ENST00000568612 GJB2P29033 226 aa3.21□□□□□ -1.9
VPS35-208ENST00000568612 PTPN4P29074 926 aa3.21□□□□□ -1.9
VPS35-208ENST00000568612 EPHB2P29323 1055 aa3.21□□□□□ -1.9
VPS35-208ENST00000568612 PDHA2P29803 388 aa3.21□□□□□ -1.9
VPS35-208ENST00000568612 PRDX6P30041 224 aa3.21□□□□□ -1.9
VPS35-208ENST00000568612 PDIA3P30101 505 aaKnown RBP3.21□□□□□ -1.9
VPS35-208ENST00000568612 CCND2P30279 289 aa3.21□□□□□ -1.9
VPS35-208ENST00000568612 CHRNA5P30532 468 aa3.21□□□□□ -1.9
VPS35-208ENST00000568612 OXTRP30559 389 aa3.21□□□□□ -1.9
VPS35-208ENST00000568612 FOLR3P41439 243 aa3.21□□□□□ -1.9
VPS35-208ENST00000568612 NR4A2P43354 598 aa3.21□□□□□ -1.9
VPS35-208ENST00000568612 MMP13P45452 471 aa3.21□□□□□ -1.9
VPS35-208ENST00000568612 MAPK9P45984 424 aa3.21□□□□□ -1.9
VPS35-208ENST00000568612 ALDH3B2P48448 385 aa3.21□□□□□ -1.9
VPS35-208ENST00000568612 DIO1P49895 249 aa3.21□□□□□ -1.9
VPS35-208ENST00000568612 MEOX2P50222 304 aa3.21□□□□□ -1.9
VPS35-208ENST00000568612 RAB13P51153 203 aa3.21□□□□□ -1.9
VPS35-208ENST00000568612 TPMTP51580 245 aa3.21□□□□□ -1.9
VPS35-208ENST00000568612 ITGA8P53708 1063 aa3.21□□□□□ -1.9
VPS35-208ENST00000568612 MAPK12P53778 367 aa3.21□□□□□ -1.9
VPS35-208ENST00000568612 EPHB1P54762 984 aa3.21□□□□□ -1.9
VPS35-208ENST00000568612 EIF3BP55884 814 aaKnown RBP3.21□□□□□ -1.9
VPS35-208ENST00000568612 ABATP80404 500 aa3.21□□□□□ -1.9
VPS35-208ENST00000568612 MGAT3Q09327 533 aa3.21□□□□□ -1.9
VPS35-208ENST00000568612 PMS2P3Q13401 168 aa3.21□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms