RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 FAM170BA6NMN3 283 aa14.05□□□□□ -0.16
USP39-220ENST00000613444 A8MT66 165 aa14.05□□□□□ -0.16
USP39-220ENST00000613444 RAD51BO15315 384 aa14.05□□□□□ -0.16
USP39-220ENST00000613444 ITM2AO43736 263 aa14.05□□□□□ -0.16
USP39-220ENST00000613444 MAGEC1O60732 1142 aa14.05□□□□□ -0.16
USP39-220ENST00000613444 IGLV3-19P01714 112 aa14.05□□□□□ -0.16
USP39-220ENST00000613444 PCCBP05166 539 aa14.05□□□□□ -0.16
USP39-220ENST00000613444 ACADMP11310 421 aa14.05□□□□□ -0.16
USP39-220ENST00000613444 ATP5F1P24539 256 aaPredicted RBP14.05□□□□□ -0.16
USP39-220ENST00000613444 TEAD1P28347 426 aa14.05□□□□□ -0.16
USP39-220ENST00000613444 TRIM23P36406 574 aa14.05□□□□□ -0.16
USP39-220ENST00000613444 PRLHRP49683 370 aa14.05□□□□□ -0.16
USP39-220ENST00000613444 IRF4Q15306 451 aa14.05□□□□□ -0.16
USP39-220ENST00000613444 ZNF658BQ4V348 819 aaPredicted RBP14.05□□□□□ -0.16
USP39-220ENST00000613444 TMEM31Q5JXX7 168 aa14.05□□□□□ -0.16
USP39-220ENST00000613444 ATG16L1Q676U5 607 aa14.05□□□□□ -0.16
USP39-220ENST00000613444 TRIM67Q6ZTA4 783 aa14.05□□□□□ -0.16
USP39-220ENST00000613444 PIWIL4Q7Z3Z4 852 aaKnown RBP14.05□□□□□ -0.16
USP39-220ENST00000613444 MOCOSQ96EN8 888 aa14.05□□□□□ -0.16
USP39-220ENST00000613444 SHDQ96IW2 340 aa14.05□□□□□ -0.16
USP39-220ENST00000613444 HIC2Q96JB3 615 aa14.05□□□□□ -0.16
USP39-220ENST00000613444 TSSK1BQ9BXA7 367 aa14.05□□□□□ -0.16
USP39-220ENST00000613444 SLC17A9Q9BYT1 436 aa14.05□□□□□ -0.16
USP39-220ENST00000613444 EPHX3Q9H6B9 360 aa14.05□□□□□ -0.16
USP39-220ENST00000613444 TRIM39Q9HCM9 518 aa14.05□□□□□ -0.16
USP39-220ENST00000613444 GULP1Q9UBP9 304 aa14.05□□□□□ -0.16
USP39-220ENST00000613444 CDYLQ9Y232 598 aa14.05□□□□□ -0.16
USP39-220ENST00000613444 NCKAP1Q9Y2A7 1128 aa14.05□□□□□ -0.16
USP39-220ENST00000613444 TBC1D3DA0A087WVF3 549 aa14.04□□□□□ -0.16
USP39-220ENST00000613444 TBC1D3IA0A087WXS9 549 aa14.04□□□□□ -0.16
USP39-220ENST00000613444 TBC1D3EA0A087X179 549 aa14.04□□□□□ -0.16
USP39-220ENST00000613444 TBC1D3KA0A087X1G2 549 aa14.04□□□□□ -0.16
USP39-220ENST00000613444 NPEPPSL1A6NEC2 478 aa14.04□□□□□ -0.16
USP39-220ENST00000613444 TBC1D3FA6NER0 549 aaPredicted RBP14.04□□□□□ -0.16
USP39-220ENST00000613444 PRR23AA6NEV1 266 aa14.04□□□□□ -0.16
USP39-220ENST00000613444 TBC1D3LB9A6J9 549 aa14.04□□□□□ -0.16
USP39-220ENST00000613444 KERAO60938 352 aa14.04□□□□□ -0.16
USP39-220ENST00000613444 TBC1D3HP0C7X1 549 aa14.04□□□□□ -0.16
USP39-220ENST00000613444 DNAJB13P59910 316 aa14.04□□□□□ -0.16
USP39-220ENST00000613444 STX3Q13277 289 aa14.04□□□□□ -0.16
USP39-220ENST00000613444 TBC1D3GQ6DHY5 549 aa14.04□□□□□ -0.16
USP39-220ENST00000613444 TBC1D3CQ6IPX1 549 aa14.04□□□□□ -0.16
USP39-220ENST00000613444 HEATR4Q86WZ0 1026 aa14.04□□□□□ -0.16
USP39-220ENST00000613444 TBC1D3Q8IZP1 549 aaPredicted RBP14.04□□□□□ -0.16
USP39-220ENST00000613444 STAG3L4Q8TBR4 150 aa14.04□□□□□ -0.16
USP39-220ENST00000613444 C7orf26Q96N11 449 aa14.04□□□□□ -0.16
USP39-220ENST00000613444 LGR4Q9BXB1 951 aa14.04□□□□□ -0.16
USP39-220ENST00000613444 TEX101Q9BY14 249 aa14.04□□□□□ -0.16
USP39-220ENST00000613444 POLMQ9NP87 494 aaPredicted RBP14.04□□□□□ -0.16
USP39-220ENST00000613444 ATXN10Q9UBB4 475 aa14.04□□□□□ -0.16
USP39-220ENST00000613444 CCDC189A1A4V9 331 aa14.03□□□□□ -0.16
USP39-220ENST00000613444 TMEM202A6NGA9 273 aa14.03□□□□□ -0.16
USP39-220ENST00000613444 BTN3A1O00481 513 aa14.03□□□□□ -0.16
USP39-220ENST00000613444 SNX3O60493 162 aa14.03□□□□□ -0.16
USP39-220ENST00000613444 DGKAP23743 735 aa14.03□□□□□ -0.16
USP39-220ENST00000613444 GRK2P25098 689 aa14.03□□□□□ -0.16
USP39-220ENST00000613444 PRKAA2P54646 552 aa14.03□□□□□ -0.16
USP39-220ENST00000613444 CDK3Q00526 305 aa14.03□□□□□ -0.16
USP39-220ENST00000613444 NFKB2Q00653 900 aa14.03□□□□□ -0.16
USP39-220ENST00000613444 SBSNQ6UWP8 590 aa14.03□□□□□ -0.16
USP39-220ENST00000613444 ZNF547Q8IVP9 402 aa14.03□□□□□ -0.16
USP39-220ENST00000613444 UBALD2Q8IYN6 164 aa14.03□□□□□ -0.16
USP39-220ENST00000613444 ASB12Q8WXK4 309 aa14.03□□□□□ -0.16
USP39-220ENST00000613444 NELL2Q99435 816 aa14.03□□□□□ -0.16
USP39-220ENST00000613444 SORT1Q99523 831 aa14.03□□□□□ -0.16
USP39-220ENST00000613444 ELAC2Q9BQ52 826 aaKnown RBP14.03□□□□□ -0.16
USP39-220ENST00000613444 OR2AG1Q9H205 316 aa14.03□□□□□ -0.16
USP39-220ENST00000613444 ACSS2Q9NR19 701 aa14.03□□□□□ -0.16
USP39-220ENST00000613444 THAP1Q9NVV9 213 aa14.03□□□□□ -0.16
USP39-220ENST00000613444 PCYT1BQ9Y5K3 369 aaPredicted RBP14.03□□□□□ -0.16
USP39-220ENST00000613444 ZFC3H1O60293 1989 aaKnown RBP14.03□□□□□ -0.16
USP39-220ENST00000613444 UBXN8O00124 270 aa14.03□□□□□ -0.16
USP39-220ENST00000613444 QSOX1O00391 747 aa14.03□□□□□ -0.16
USP39-220ENST00000613444 GPC4O75487 556 aa14.03□□□□□ -0.16
USP39-220ENST00000613444 LYPLA1O75608 230 aaPredicted RBP14.03□□□□□ -0.16
USP39-220ENST00000613444 IPO13O94829 963 aaKnown RBP14.03□□□□□ -0.16
USP39-220ENST00000613444 CDK14O94921 469 aa14.03□□□□□ -0.16
USP39-220ENST00000613444 CBSLP0DN79 551 aa14.03□□□□□ -0.16
USP39-220ENST00000613444 CBSP35520 551 aa14.03□□□□□ -0.16
USP39-220ENST00000613444 SLC1A6P48664 564 aa14.03□□□□□ -0.16
USP39-220ENST00000613444 RGS4P49798 205 aa14.03□□□□□ -0.16
USP39-220ENST00000613444 HK3P52790 923 aa14.03□□□□□ -0.16
USP39-220ENST00000613444 NAGLUP54802 743 aa14.03□□□□□ -0.16
USP39-220ENST00000613444 SFSWAPQ12872 951 aaKnown RBP14.03□□□□□ -0.16
USP39-220ENST00000613444 INPP5AQ14642 412 aa14.03□□□□□ -0.16
USP39-220ENST00000613444 PPP1R3AQ16821 1122 aa14.03□□□□□ -0.16
USP39-220ENST00000613444 BCL7AQ4VC05 210 aa14.03□□□□□ -0.16
USP39-220ENST00000613444 TMEM220Q6QAJ8 160 aa14.03□□□□□ -0.16
USP39-220ENST00000613444 XKR5Q6UX68 686 aa14.03□□□□□ -0.16
USP39-220ENST00000613444 VRK3Q8IV63 474 aa14.03□□□□□ -0.16
USP39-220ENST00000613444 TMEM237Q96Q45 408 aa14.03□□□□□ -0.16
USP39-220ENST00000613444 NSRP1Q9H0G5 558 aaKnown RBP14.03□□□□□ -0.16
USP39-220ENST00000613444 CD320Q9NPF0 282 aa14.03□□□□□ -0.16
USP39-220ENST00000613444 EIF3FO00303 357 aaPredicted RBP14.02□□□□□ -0.16
USP39-220ENST00000613444 KLK8O60259 260 aa14.02□□□□□ -0.16
USP39-220ENST00000613444 NUAK1O60285 661 aa14.02□□□□□ -0.16
USP39-220ENST00000613444 FTH1P02794 183 aa14.02□□□□□ -0.16
USP39-220ENST00000613444 ZNF8P17098 575 aaPredicted RBP14.02□□□□□ -0.16
USP39-220ENST00000613444 MAT2AP31153 395 aaKnown RBP14.02□□□□□ -0.16
USP39-220ENST00000613444 IGFALSP35858 605 aa14.02□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms