RNA–Protein interactions for RNA: ENST00000596457.1

LIG1-211, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 792 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-211ENST00000596457 HEXDCQ8WVB3 486 aa10.9□□□□□ -0.66
LIG1-211ENST00000596457 SLCO2A1Q92959 643 aa10.9□□□□□ -0.66
LIG1-211ENST00000596457 ZNF669Q96BR6 464 aaPredicted RBP10.9□□□□□ -0.66
LIG1-211ENST00000596457 SERPINB12Q96P63 405 aa10.9□□□□□ -0.66
LIG1-211ENST00000596457 GFM1Q96RP9 751 aaKnown RBP10.9□□□□□ -0.66
LIG1-211ENST00000596457 TTC1Q99614 292 aa10.9□□□□□ -0.66
LIG1-211ENST00000596457 C19orf43Q9BQ61 176 aa10.9□□□□□ -0.66
LIG1-211ENST00000596457 TRIM56Q9BRZ2 755 aaKnown RBP10.9□□□□□ -0.66
LIG1-211ENST00000596457 ZMYND15Q9H091 742 aa10.9□□□□□ -0.66
LIG1-211ENST00000596457 DPH5Q9H2P9 285 aa10.9□□□□□ -0.66
LIG1-211ENST00000596457 XAB2Q9HCS7 855 aaKnown RBP10.9□□□□□ -0.66
LIG1-211ENST00000596457 CATSPERZQ9NTU4 200 aa10.9□□□□□ -0.66
LIG1-211ENST00000596457 SCHIP1Q9P0W5 487 aaPredicted RBP10.9□□□□□ -0.66
LIG1-211ENST00000596457 RIMKLBQ9ULI2 386 aa10.9□□□□□ -0.66
LIG1-211ENST00000596457 ATXN7L1Q9ULK2 861 aaPredicted RBP10.9□□□□□ -0.66
LIG1-211ENST00000596457 SOX13Q9UN79 622 aa10.9□□□□□ -0.66
LIG1-211ENST00000596457 CLCA2Q9UQC9 943 aa10.9□□□□□ -0.66
LIG1-211ENST00000596457 SNX24Q9Y343 169 aa10.9□□□□□ -0.66
LIG1-211ENST00000596457 TRBV5-4A0A0C4DH59 114 aa10.89□□□□□ -0.67
LIG1-211ENST00000596457 AGAP14A8MT82 685 aa10.89□□□□□ -0.67
LIG1-211ENST00000596457 PPM1DO15297 605 aa10.89□□□□□ -0.67
LIG1-211ENST00000596457 CD3EAPO15446 510 aaKnown RBP10.89□□□□□ -0.67
LIG1-211ENST00000596457 OR1I1O60431 355 aa10.89□□□□□ -0.67
LIG1-211ENST00000596457 VAPBO95292 243 aa10.89□□□□□ -0.67
LIG1-211ENST00000596457 MLNP12872 115 aa10.89□□□□□ -0.67
LIG1-211ENST00000596457 F3P13726 295 aa10.89□□□□□ -0.67
LIG1-211ENST00000596457 ITGB6P18564 788 aa10.89□□□□□ -0.67
LIG1-211ENST00000596457 ITGA8P53708 1063 aa10.89□□□□□ -0.67
LIG1-211ENST00000596457 HHEXQ03014 270 aa10.89□□□□□ -0.67
LIG1-211ENST00000596457 ACVR1Q04771 509 aa10.89□□□□□ -0.67
LIG1-211ENST00000596457 TARDBPQ13148 414 aaKnown RBP eCLIP10.89□□□□□ -0.67
LIG1-211ENST00000596457 SPIDRQ14159 915 aa10.89□□□□□ -0.67
LIG1-211ENST00000596457 SEMA3AQ14563 771 aa10.89□□□□□ -0.67
LIG1-211ENST00000596457 BRD3Q15059 726 aa10.89□□□□□ -0.67
LIG1-211ENST00000596457 BBS9Q3SYG4 887 aa10.89□□□□□ -0.67
LIG1-211ENST00000596457 HP1BP3Q5SSJ5 553 aaPredicted RBP10.89□□□□□ -0.67
LIG1-211ENST00000596457 LYPLAL1Q5VWZ2 237 aa10.89□□□□□ -0.67
LIG1-211ENST00000596457 IYDQ6PHW0 289 aa10.89□□□□□ -0.67
LIG1-211ENST00000596457 FAM83HQ6ZRV2 1179 aaPredicted RBP10.89□□□□□ -0.67
LIG1-211ENST00000596457 SLC9B2Q86UD5 537 aa10.89□□□□□ -0.67
LIG1-211ENST00000596457 TMPRSS12Q86WS5 348 aa10.89□□□□□ -0.67
LIG1-211ENST00000596457 LURAP1LQ8IV03 231 aa10.89□□□□□ -0.67
LIG1-211ENST00000596457 CCNJLQ8IV13 435 aa10.89□□□□□ -0.67
LIG1-211ENST00000596457 CLDN19Q8N6F1 224 aa10.89□□□□□ -0.67
LIG1-211ENST00000596457 CXorf40BQ96DE9 158 aa10.89□□□□□ -0.67
LIG1-211ENST00000596457 SNF8Q96H20 258 aa10.89□□□□□ -0.67
LIG1-211ENST00000596457 ZNF514Q96K75 400 aaPredicted RBP10.89□□□□□ -0.67
LIG1-211ENST00000596457 PWWP2AQ96N64 755 aa10.89□□□□□ -0.67
LIG1-211ENST00000596457 SLC38A3Q99624 504 aa10.89□□□□□ -0.67
LIG1-211ENST00000596457 KIFC1Q9BW19 673 aa10.89□□□□□ -0.67
LIG1-211ENST00000596457 LRRN3Q9H3W5 708 aa10.89□□□□□ -0.67
LIG1-211ENST00000596457 STN1Q9H668 368 aaKnown RBP10.89□□□□□ -0.67
LIG1-211ENST00000596457 TREX1Q9NSU2 369 aa10.89□□□□□ -0.67
LIG1-211ENST00000596457 KCNK4Q9NYG8 393 aa10.89□□□□□ -0.67
LIG1-211ENST00000596457 IL1RAPL1Q9NZN1 696 aa10.89□□□□□ -0.67
LIG1-211ENST00000596457 CDC23Q9UJX2 597 aa10.89□□□□□ -0.67
LIG1-211ENST00000596457 DNMT3AQ9Y6K1 912 aaPredicted RBP10.89□□□□□ -0.67
LIG1-211ENST00000596457 PRSS21Q9Y6M0 314 aa10.89□□□□□ -0.67
LIG1-211ENST00000596457 ITPR1Q14643 2758 aa10.89□□□□□ -0.67
LIG1-211ENST00000596457 PRAMEF33A0A0G2JMD5 474 aa10.88□□□□□ -0.67
LIG1-211ENST00000596457 UBA6A0AVT1 1052 aaPredicted RBP10.88□□□□□ -0.67
LIG1-211ENST00000596457 MGAT4DA6NG13 374 aa10.88□□□□□ -0.67
LIG1-211ENST00000596457 OR5K4A6NMS3 321 aa10.88□□□□□ -0.67
LIG1-211ENST00000596457 OR52A4PA6NMU1 304 aa10.88□□□□□ -0.67
LIG1-211ENST00000596457 RAD51CO43502 376 aa10.88□□□□□ -0.67
LIG1-211ENST00000596457 B4GAT1O43505 415 aa10.88□□□□□ -0.67
LIG1-211ENST00000596457 SGTAO43765 313 aa10.88□□□□□ -0.67
LIG1-211ENST00000596457 NUDT21O43809 227 aaKnown RBP10.88□□□□□ -0.67
LIG1-211ENST00000596457 KCNJ13O60928 360 aa10.88□□□□□ -0.67
LIG1-211ENST00000596457 CSO75390 466 aaKnown RBP10.88□□□□□ -0.67
LIG1-211ENST00000596457 NDUFS3O75489 264 aa10.88□□□□□ -0.67
LIG1-211ENST00000596457 VIPP01282 170 aa10.88□□□□□ -0.67
LIG1-211ENST00000596457 PAMP19021 973 aa10.88□□□□□ -0.67
LIG1-211ENST00000596457 PSMA3P25788 255 aa10.88□□□□□ -0.67
LIG1-211ENST00000596457 IVDP26440 423 aa10.88□□□□□ -0.67
LIG1-211ENST00000596457 PPARGP37231 505 aaPredicted RBP10.88□□□□□ -0.67
LIG1-211ENST00000596457 HALP42357 657 aa10.88□□□□□ -0.67
LIG1-211ENST00000596457 NSG1P42857 185 aa10.88□□□□□ -0.67
LIG1-211ENST00000596457 CLCNKAP51800 687 aa10.88□□□□□ -0.67
LIG1-211ENST00000596457 CSE1LP55060 971 aaKnown RBP10.88□□□□□ -0.67
LIG1-211ENST00000596457 CKAP4Q07065 602 aaKnown RBP10.88□□□□□ -0.67
LIG1-211ENST00000596457 DHX9Q08211 1270 aaKnown RBP10.88□□□□□ -0.67
LIG1-211ENST00000596457 CLCA4Q14CN2 919 aa10.88□□□□□ -0.67
LIG1-211ENST00000596457 ANKRD20A4Q4UJ75 823 aa10.88□□□□□ -0.67
LIG1-211ENST00000596457 BCL7AQ4VC05 210 aa10.88□□□□□ -0.67
LIG1-211ENST00000596457 NKAIN2Q5VXU1 208 aa10.88□□□□□ -0.67
LIG1-211ENST00000596457 FOXR1Q6PIV2 292 aa10.88□□□□□ -0.67
LIG1-211ENST00000596457 NAPRTQ6XQN6 538 aa10.88□□□□□ -0.67
LIG1-211ENST00000596457 USP53Q70EK8 1073 aa10.88□□□□□ -0.67
LIG1-211ENST00000596457 MAATS1Q7Z4T9 603 aa10.88□□□□□ -0.67
LIG1-211ENST00000596457 CACTIN-AS1Q8N1I8 211 aa10.88□□□□□ -0.67
LIG1-211ENST00000596457 SFRP1Q8N474 314 aa10.88□□□□□ -0.67
LIG1-211ENST00000596457 LILRA3Q8N6C8 439 aaPredicted RBP10.88□□□□□ -0.67
LIG1-211ENST00000596457 OR2L2Q8NH16 312 aa10.88□□□□□ -0.67
LIG1-211ENST00000596457 ZCCHC14Q8WYQ9 949 aaKnown RBP10.88□□□□□ -0.67
LIG1-211ENST00000596457 STAMBPL1Q96FJ0 436 aa10.88□□□□□ -0.67
LIG1-211ENST00000596457 AHCYL2Q96HN2 611 aaKnown RBP10.88□□□□□ -0.67
LIG1-211ENST00000596457 FCRL3Q96P31 734 aaPredicted RBP10.88□□□□□ -0.67
LIG1-211ENST00000596457 DEPDC7Q96QD5 511 aa10.88□□□□□ -0.67
LIG1-211ENST00000596457 CCM2Q9BSQ5 444 aa10.88□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms