RNA–Protein interactions for RNA: ENST00000547018.5

SCAF11-209, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 5

Gene SCAF11, Length 3,271 nt, Biotype non stop decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-209ENST00000547018 TDP1Q9NUW8 608 aa12.56□□□□□ -0.4
SCAF11-209ENST00000547018 ZNF225Q9UK10 706 aa12.56□□□□□ -0.4
SCAF11-209ENST00000547018 CCDC160A6NGH7 325 aa12.55□□□□□ -0.4
SCAF11-209ENST00000547018 SCAMP1O15126 338 aa12.55□□□□□ -0.4
SCAF11-209ENST00000547018 FKBP6O75344 327 aa12.55□□□□□ -0.4
SCAF11-209ENST00000547018 LRATO95237 230 aa12.55□□□□□ -0.4
SCAF11-209ENST00000547018 STAMBPO95630 424 aa12.55□□□□□ -0.4
SCAF11-209ENST00000547018 ATP6V1B1P15313 513 aa12.55□□□□□ -0.4
SCAF11-209ENST00000547018 EN2P19622 333 aaPredicted RBP12.55□□□□□ -0.4
SCAF11-209ENST00000547018 ERVPABLB-1P60509 514 aa12.55□□□□□ -0.4
SCAF11-209ENST00000547018 TYSND1Q2T9J0 566 aa12.55□□□□□ -0.4
SCAF11-209ENST00000547018 AARS2Q5JTZ9 985 aaKnown RBP12.55□□□□□ -0.4
SCAF11-209ENST00000547018 NAIF1Q69YI7 327 aaPredicted RBP12.55□□□□□ -0.4
SCAF11-209ENST00000547018 CRTC1Q6UUV9 634 aa12.55□□□□□ -0.4
SCAF11-209ENST00000547018 PGAM4Q8N0Y7 254 aa12.55□□□□□ -0.4
SCAF11-209ENST00000547018 LRTOMTQ8WZ04 291 aa12.55□□□□□ -0.4
SCAF11-209ENST00000547018 TOX2Q96NM4 488 aa12.55□□□□□ -0.4
SCAF11-209ENST00000547018 PKP2Q99959 881 aa12.55□□□□□ -0.4
SCAF11-209ENST00000547018 SUV39H2Q9H5I1 410 aa12.55□□□□□ -0.4
SCAF11-209ENST00000547018 COMMD8Q9NX08 183 aa12.55□□□□□ -0.4
SCAF11-209ENST00000547018 DNMT3BQ9UBC3 853 aaKnown RBP12.55□□□□□ -0.4
SCAF11-209ENST00000547018 NDUFAF1Q9Y375 327 aa12.55□□□□□ -0.4
SCAF11-209ENST00000547018 MRPS23Q9Y3D9 190 aaKnown RBP12.55□□□□□ -0.4
SCAF11-209ENST00000547018 DTNAQ9Y4J8 743 aa12.55□□□□□ -0.4
SCAF11-209ENST00000547018 POLR3HQ9Y535 204 aaPredicted RBP12.55□□□□□ -0.4
SCAF11-209ENST00000547018 OR51B4Q9Y5P0 310 aa12.55□□□□□ -0.4
SCAF11-209ENST00000547018 PABPN1LA6NDY0 278 aaKnown RBP12.55□□□□□ -0.4
SCAF11-209ENST00000547018 FFAR2O15552 330 aa12.55□□□□□ -0.4
SCAF11-209ENST00000547018 PPM1AP35813 382 aa12.55□□□□□ -0.4
SCAF11-209ENST00000547018 ETV3P41162 512 aa12.55□□□□□ -0.4
SCAF11-209ENST00000547018 PTGER3P43115 390 aa12.55□□□□□ -0.4
SCAF11-209ENST00000547018 METAP1P53582 386 aa12.55□□□□□ -0.4
SCAF11-209ENST00000547018 RPL38P63173 70 aaKnown RBP12.55□□□□□ -0.4
SCAF11-209ENST00000547018 ACVR1Q04771 509 aa12.55□□□□□ -0.4
SCAF11-209ENST00000547018 GK3PQ14409 553 aa12.55□□□□□ -0.4
SCAF11-209ENST00000547018 IMPG1Q17R60 797 aa12.55□□□□□ -0.4
SCAF11-209ENST00000547018 ZNF423Q2M1K9 1284 aa12.55□□□□□ -0.4
SCAF11-209ENST00000547018 MYLK3Q32MK0 819 aa12.55□□□□□ -0.4
SCAF11-209ENST00000547018 FAM109BQ6ICB4 259 aaPredicted RBP12.55□□□□□ -0.4
SCAF11-209ENST00000547018 LARP4Q71RC2 724 aaKnown RBP eCLIP12.55□□□□□ -0.46e-7■■■■□ 23.4
SCAF11-209ENST00000547018 OR4F6Q8NGB9 312 aa12.55□□□□□ -0.4
SCAF11-209ENST00000547018 OR2T11Q8NH01 316 aa12.55□□□□□ -0.4
SCAF11-209ENST00000547018 OVCA2Q8WZ82 227 aa12.55□□□□□ -0.4
SCAF11-209ENST00000547018 DLG3Q92796 817 aa12.55□□□□□ -0.4
SCAF11-209ENST00000547018 TRMT2BQ96GJ1 504 aaKnown RBP12.55□□□□□ -0.4
SCAF11-209ENST00000547018 FAR2Q96K12 515 aa12.55□□□□□ -0.4
SCAF11-209ENST00000547018 HERC2P3Q9BVR0 1158 aa12.55□□□□□ -0.4
SCAF11-209ENST00000547018 KLHL4Q9C0H6 718 aa12.55□□□□□ -0.4
SCAF11-209ENST00000547018 MEAF6Q9HAF1 191 aa12.55□□□□□ -0.4
SCAF11-209ENST00000547018 SUN2Q9UH99 717 aa12.55□□□□□ -0.4
SCAF11-209ENST00000547018 SLC25A13Q9UJS0 675 aa12.55□□□□□ -0.4
SCAF11-209ENST00000547018 GRM6O15303 877 aa12.54□□□□□ -0.4
SCAF11-209ENST00000547018 GREM1O60565 184 aa12.54□□□□□ -0.4
SCAF11-209ENST00000547018 SEC24DO94855 1032 aaPredicted RBP12.54□□□□□ -0.4
SCAF11-209ENST00000547018 TSPAN12O95859 305 aa12.54□□□□□ -0.4
SCAF11-209ENST00000547018 CKMT2P17540 419 aa12.54□□□□□ -0.4
SCAF11-209ENST00000547018 LHCGRP22888 699 aa12.54□□□□□ -0.4
SCAF11-209ENST00000547018 RGS4P49798 205 aa12.54□□□□□ -0.4
SCAF11-209ENST00000547018 LBX1P52954 281 aa12.54□□□□□ -0.4
SCAF11-209ENST00000547018 TNK2Q07912 1038 aa12.54□□□□□ -0.4
SCAF11-209ENST00000547018 PTGR1Q14914 329 aa12.54□□□□□ -0.4
SCAF11-209ENST00000547018 CRY1Q16526 586 aa12.54□□□□□ -0.4
SCAF11-209ENST00000547018 INO80DQ53TQ3 878 aaPredicted RBP12.54□□□□□ -0.4
SCAF11-209ENST00000547018 MTX3Q5HYI7 312 aa12.54□□□□□ -0.4
SCAF11-209ENST00000547018 RNF168Q8IYW5 571 aaPredicted RBP12.54□□□□□ -0.4
SCAF11-209ENST00000547018 LILRA3Q8N6C8 439 aaPredicted RBP12.54□□□□□ -0.4
SCAF11-209ENST00000547018 OR56A4Q8NGH8 313 aa12.54□□□□□ -0.4
SCAF11-209ENST00000547018 CIB1Q99828 191 aa12.54□□□□□ -0.4
SCAF11-209ENST00000547018 TBCDQ9BTW9 1192 aa12.54□□□□□ -0.4
SCAF11-209ENST00000547018 EPS15L1Q9UBC2 864 aa12.54□□□□□ -0.4
SCAF11-209ENST00000547018 LRCH1Q9Y2L9 728 aa12.54□□□□□ -0.4
SCAF11-209ENST00000547018 NOTCH4Q99466 2003 aa12.54□□□□□ -0.4
SCAF11-209ENST00000547018 COL4A6Q14031 1691 aa12.54□□□□□ -0.4
SCAF11-209ENST00000547018 ENO4A6NNW6 628 aa12.54□□□□□ -0.4
SCAF11-209ENST00000547018 ARHGEF15O94989 841 aa12.54□□□□□ -0.4
SCAF11-209ENST00000547018 PGM3O95394 542 aa12.54□□□□□ -0.4
SCAF11-209ENST00000547018 HK2P52789 917 aa12.54□□□□□ -0.4
SCAF11-209ENST00000547018 PPP1R8Q12972 351 aaKnown RBP12.54□□□□□ -0.4
SCAF11-209ENST00000547018 UGT3A2Q3SY77 523 aa12.54□□□□□ -0.4
SCAF11-209ENST00000547018 PIGGQ5H8A4 983 aa12.54□□□□□ -0.4
SCAF11-209ENST00000547018 C6orf52Q5T4I8 152 aa12.54□□□□□ -0.4
SCAF11-209ENST00000547018 C22orf39Q6P5X5 142 aa12.54□□□□□ -0.4
SCAF11-209ENST00000547018 LCA5Q86VQ0 697 aa12.54□□□□□ -0.4
SCAF11-209ENST00000547018 SFTPA1Q8IWL2 248 aa12.54□□□□□ -0.4
SCAF11-209ENST00000547018 PQLC1Q8N2U9 271 aa12.54□□□□□ -0.4
SCAF11-209ENST00000547018 OR10Q1Q8NGQ4 319 aa12.54□□□□□ -0.4
SCAF11-209ENST00000547018 GPR150Q8NGU9 434 aa12.54□□□□□ -0.4
SCAF11-209ENST00000547018 SLC25A23Q9BV35 468 aa12.54□□□□□ -0.4
SCAF11-209ENST00000547018 ZBP1Q9H171 429 aa12.54□□□□□ -0.4
SCAF11-209ENST00000547018 SCOCQ9UIL1 159 aa12.54□□□□□ -0.4
SCAF11-209ENST00000547018 PCDHGB4Q9UN71 923 aa12.54□□□□□ -0.4
SCAF11-209ENST00000547018 RNF11Q9Y3C5 154 aa12.54□□□□□ -0.4
SCAF11-209ENST00000547018 PCDHGB5Q9Y5G0 923 aa12.54□□□□□ -0.4
SCAF11-209ENST00000547018 PCDHGA7Q9Y5G6 932 aa12.54□□□□□ -0.4
SCAF11-209ENST00000547018 ESR1P03372 595 aa12.54□□□□□ -0.4
SCAF11-209ENST00000547018 GSNP06396 782 aa12.54□□□□□ -0.4
SCAF11-209ENST00000547018 PABPC1P11940 636 aaKnown RBP12.54□□□□□ -0.4
SCAF11-209ENST00000547018 PCNAP12004 261 aa12.54□□□□□ -0.4
SCAF11-209ENST00000547018 KCNK10P57789 538 aa12.54□□□□□ -0.4
SCAF11-209ENST00000547018 ATP6V0D1P61421 351 aa12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms