RNA–Protein interactions for RNA: YOR005C

DNL4, Transcript of DNA ligase required for nonhomologous end-joining (NHEJ), yeast

Gene DNL4, Length 2,835 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
DNL4	YOR005C	ABD1	P32783	436 aa	Predicted RBP	3.16	□□□□□ -1.9
DNL4	YOR005C	PBY1	P38254	753 aa		3.16	□□□□□ -1.9
DNL4	YOR005C	MAL11	P53048	616 aa		3.16	□□□□□ -1.9
DNL4	YOR005C	TFB2	Q02939	513 aa		3.16	□□□□□ -1.9
DNL4	YOR005C	FRK1	Q03002	865 aa	Predicted RBP	3.16	□□□□□ -1.9
DNL4	YOR005C	EMG1	Q06287	252 aa	Known RBP	3.16	□□□□□ -1.9
DNL4	YOR005C	TMA17	Q12513	150 aa		3.16	□□□□□ -1.9
DNL4	YOR005C	SNQ2	P32568	1501 aa	Known RBP	3.16	□□□□□ -1.9
DNL4	YOR005C	PAN1	P32521	1480 aa		3.16	□□□□□ -1.9
DNL4	YOR005C	ARE1	P25628	610 aa		3.15	□□□□□ -1.9
DNL4	YOR005C	LYP1	P32487	611 aa		3.15	□□□□□ -1.9
DNL4	YOR005C	RER2	P35196	286 aa		3.15	□□□□□ -1.9
DNL4	YOR005C	BET3	P36149	193 aa		3.15	□□□□□ -1.9
DNL4	YOR005C	AIM46	P38885	310 aa		3.15	□□□□□ -1.9
DNL4	YOR005C	DLD3	P39976	496 aa	Known RBP	3.15	□□□□□ -1.9
DNL4	YOR005C	HUL4	P40985	892 aa		3.15	□□□□□ -1.9
DNL4	YOR005C	YGL140C	P53120	1219 aa		3.15	□□□□□ -1.9
DNL4	YOR005C	HDA2	Q06629	674 aa		3.15	□□□□□ -1.9
DNL4	YOR005C	HEM13	P11353	328 aa	Known RBP	3.15	□□□□□ -1.91
DNL4	YOR005C	PYC2	P32327	1180 aa	Known RBP	3.15	□□□□□ -1.91
DNL4	YOR005C	PEX28	P38848	579 aa		3.15	□□□□□ -1.91
DNL4	YOR005C	SSN3	P39073	555 aa		3.15	□□□□□ -1.91
DNL4	YOR005C	BDP1	P46678	594 aa		3.15	□□□□□ -1.91
DNL4	YOR005C	YGR237C	P50089	785 aa		3.15	□□□□□ -1.91
DNL4	YOR005C	NOG1	Q02892	647 aa	Known RBP	3.15	□□□□□ -1.91
DNL4	YOR005C	SPO20	Q04359	397 aa		3.15	□□□□□ -1.91
DNL4	YOR005C	TMA64	Q04600	565 aa	Known RBP	3.15	□□□□□ -1.91
DNL4	YOR005C	PMT7	Q06644	662 aa		3.15	□□□□□ -1.91
DNL4	YOR005C	SLX4	Q12098	748 aa		3.15	□□□□□ -1.91
DNL4	YOR005C	THS1	P04801	734 aa	Known RBP	3.15	□□□□□ -1.91
DNL4	YOR005C	TRX2	P22803	104 aa	Known RBP	3.15	□□□□□ -1.91
DNL4	YOR005C	PEX6	P33760	1030 aa		3.15	□□□□□ -1.91
DNL4	YOR005C	SNF7	P39929	240 aa	Known RBP	3.15	□□□□□ -1.91
DNL4	YOR005C	ENT3	P47160	408 aa		3.15	□□□□□ -1.91
DNL4	YOR005C	SIW14	P53965	281 aa		3.15	□□□□□ -1.91
DNL4	YOR005C	SVL3	Q03088	825 aa	Known RBP	3.15	□□□□□ -1.91
DNL4	YOR005C	NKP1	Q12493	238 aa		3.15	□□□□□ -1.91
DNL4	YOR005C	TMA7	Q3E764	64 aa	Known RBP	3.15	□□□□□ -1.91
DNL4	YOR005C	ATG2	P53855	1592 aa		3.14	□□□□□ -1.91
DNL4	YOR005C	TOP2	P06786	1428 aa	Known RBP	3.14	□□□□□ -1.91
DNL4	YOR005C	SQT1	P35184	431 aa		3.14	□□□□□ -1.91
DNL4	YOR005C	SHM1	P37292	490 aa	Predicted RBP	3.14	□□□□□ -1.91
DNL4	YOR005C	ECM2	P38241	364 aa	Known RBP	3.14	□□□□□ -1.91
DNL4	YOR005C	RIM11	P38615	370 aa		3.14	□□□□□ -1.91
DNL4	YOR005C	GDH3	P39708	457 aa		3.14	□□□□□ -1.91
DNL4	YOR005C	RSM26	P47141	266 aa		3.14	□□□□□ -1.91
DNL4	YOR005C	YJR120W	P47157	116 aa		3.14	□□□□□ -1.91
DNL4	YOR005C	PMT3	P47190	753 aa		3.14	□□□□□ -1.91
DNL4	YOR005C	HLJ1	P48353	224 aa		3.14	□□□□□ -1.91
DNL4	YOR005C	YNL193W	P53870	558 aa		3.14	□□□□□ -1.91
DNL4	YOR005C	YLR225C	Q05948	407 aa	Known RBP	3.14	□□□□□ -1.91
DNL4	YOR005C	SRF1	Q12516	437 aa		3.14	□□□□□ -1.91
DNL4	YOR005C	ATP4	P05626	244 aa		3.14	□□□□□ -1.91
DNL4	YOR005C	PRP5	P21372	849 aa	Predicted RBP	3.14	□□□□□ -1.91
DNL4	YOR005C	ALA1	P40825	983 aa	Known RBP	3.14	□□□□□ -1.91
DNL4	YOR005C	JJJ2	P46997	583 aa		3.14	□□□□□ -1.91
DNL4	YOR005C	HSV2	P50079	448 aa	Predicted RBP	3.14	□□□□□ -1.91
DNL4	YOR005C	GPG1	P53130	126 aa		3.14	□□□□□ -1.91
DNL4	YOR005C	VMS1	Q04311	632 aa	Known RBP	3.14	□□□□□ -1.91
DNL4	YOR005C	MLP2	P40457	1679 aa		3.13	□□□□□ -1.91
DNL4	YOR005C	RDH54	P38086	958 aa		3.13	□□□□□ -1.91
DNL4	YOR005C	YIL165C	P40446	119 aa		3.13	□□□□□ -1.91
DNL4	YOR005C	RPA135	P22138	1203 aa	Known RBP	3.13	□□□□□ -1.91
DNL4	YOR005C	DPB3	P27344	201 aa		3.13	□□□□□ -1.91
DNL4	YOR005C	GEM1	P39722	662 aa		3.13	□□□□□ -1.91
DNL4	YOR005C	IES5	P40060	125 aa		3.13	□□□□□ -1.91
DNL4	YOR005C	YTA6	P40328	754 aa		3.13	□□□□□ -1.91
DNL4	YOR005C	ALR2	P43553	858 aa		3.13	□□□□□ -1.91
DNL4	YOR005C	MSN5	P52918	1224 aa		3.13	□□□□□ -1.91
DNL4	YOR005C	YGR021W	P53212	290 aa		3.13	□□□□□ -1.91
DNL4	YOR005C	NPL3	Q01560	414 aa	Known RBP RIP-Chip data	3.13	□□□□□ -1.91	RIP-Chip
DNL4	YOR005C	YLR001C	Q07895	862 aa		3.13	□□□□□ -1.91
DNL4	YOR005C	THI73	Q07904	523 aa		3.13	□□□□□ -1.91
DNL4	YOR005C	REC8	Q12188	680 aa		3.13	□□□□□ -1.91
DNL4	YOR005C	CMR1	Q12510	522 aa	Known RBP	3.13	□□□□□ -1.91
DNL4	YOR005C	GEA1	P47102	1408 aa	Predicted RBP	3.13	□□□□□ -1.91
DNL4	YOR005C	PIF1	P07271	859 aa		3.12	□□□□□ -1.91
DNL4	YOR005C	NPR1	P22211	790 aa		3.12	□□□□□ -1.91
DNL4	YOR005C	MRF1	P30775	413 aa	Predicted RBP	3.12	□□□□□ -1.91
DNL4	YOR005C	MKK2	P32491	506 aa		3.12	□□□□□ -1.91
DNL4	YOR005C	APM2	P38700	605 aa		3.12	□□□□□ -1.91
DNL4	YOR005C	MTR4	P47047	1073 aa	Known RBP	3.12	□□□□□ -1.91
DNL4	YOR005C	SKP1	P52286	194 aa		3.12	□□□□□ -1.91
DNL4	YOR005C	TGL2	P54857	326 aa		3.12	□□□□□ -1.91
DNL4	YOR005C	UME1	Q03010	460 aa		3.12	□□□□□ -1.91
DNL4	YOR005C	ATG16	Q03818	150 aa		3.12	□□□□□ -1.91
DNL4	YOR005C	SND1	Q04007	877 aa		3.12	□□□□□ -1.91
DNL4	YOR005C	BRE1	Q07457	700 aa	Known RBP	3.12	□□□□□ -1.91
DNL4	YOR005C	YDL124W	Q07551	312 aa	Known RBP	3.12	□□□□□ -1.91
DNL4	YOR005C	MDM12	Q92328	271 aa		3.12	□□□□□ -1.91
DNL4	YOR005C	TSC11	P40061	1430 aa		3.12	□□□□□ -1.91
DNL4	YOR005C	PRP9	P19736	530 aa	Known RBP	3.12	□□□□□ -1.91
DNL4	YOR005C	MSH3	P25336	1018 aa		3.12	□□□□□ -1.91
DNL4	YOR005C	RGA1	P39083	1007 aa		3.12	□□□□□ -1.91
DNL4	YOR005C	ERP2	P39704	215 aa		3.12	□□□□□ -1.91
DNL4	YOR005C	NIT1	P40447	199 aa		3.12	□□□□□ -1.91
DNL4	YOR005C	DAS1	P47005	663 aa		3.12	□□□□□ -1.91
DNL4	YOR005C	MDG1	P53885	366 aa		3.12	□□□□□ -1.91
DNL4	YOR005C	COG6	P53959	839 aa		3.12	□□□□□ -1.91
DNL4	YOR005C	PEX13	P80667	386 aa		3.12	□□□□□ -1.91

Retrieved 100 of 5,963 RNA–protein pairs in 28.4 ms