RNA–Protein interactions for RNA: YNL288W

CAF40, Transcript of Component of the CCR4-NOT transcriptional complex, yeastyeast

Gene CAF40, Length 1,122 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CAF40YNL288W YNL193WP53870 558 aa7.29□□□□□ -1.24
CAF40YNL288W RPN7Q06103 429 aaKnown RBP7.29□□□□□ -1.24
CAF40YNL288W ACK1Q07622 623 aaPredicted RBP7.29□□□□□ -1.24
CAF40YNL288W WRS1Q12109 432 aaKnown RBP7.29□□□□□ -1.24
CAF40YNL288W WTM2Q12206 467 aa7.29□□□□□ -1.24
CAF40YNL288W NOT3P06102 836 aaKnown RBP7.28□□□□□ -1.24
CAF40YNL288W CDC16P09798 840 aa7.28□□□□□ -1.24
CAF40YNL288W ECM21P38167 1117 aaKnown RBP7.28□□□□□ -1.24
CAF40YNL288W FET4P40988 552 aa7.28□□□□□ -1.24
CAF40YNL288W GSM1P42950 618 aa7.28□□□□□ -1.24
CAF40YNL288W YFH7P43591 353 aa7.28□□□□□ -1.24
CAF40YNL288W TRM44Q02648 567 aaKnown RBP7.28□□□□□ -1.24
CAF40YNL288W TOS4Q06266 489 aa7.28□□□□□ -1.24
CAF40YNL288W RFC1P38630 861 aaKnown RBP7.27□□□□□ -1.25
CAF40YNL288W HDA3Q06623 655 aa7.27□□□□□ -1.25
CAF40YNL288W FLO11P08640 1367 aa7.27□□□□□ -1.25
CAF40YNL288W CYB2P00175 591 aa7.26□□□□□ -1.25
CAF40YNL288W GEF1P37020 779 aa7.26□□□□□ -1.25
CAF40YNL288W KTR3P38130 404 aaPredicted RBP7.26□□□□□ -1.25
CAF40YNL288W OSH3P38713 996 aaKnown RBP7.26□□□□□ -1.25
CAF40YNL288W YIR042CP40586 236 aa7.26□□□□□ -1.25
CAF40YNL288W YGR117CP53270 476 aa7.26□□□□□ -1.25
CAF40YNL288W ALO1P54783 526 aaKnown RBP7.26□□□□□ -1.25
CAF40YNL288W SEN54Q02825 467 aaPredicted RBP7.26□□□□□ -1.25
CAF40YNL288W INM2Q05533 292 aa7.26□□□□□ -1.25
CAF40YNL288W NKP2Q06162 153 aa7.26□□□□□ -1.25
CAF40YNL288W BRE1Q07457 700 aaKnown RBP7.26□□□□□ -1.25
CAF40YNL288W CBC2Q08920 208 aaKnown RBP RIP-Chip data7.26□□□□□ -1.25not detected
CAF40YNL288W RAD50P12753 1312 aa7.26□□□□□ -1.25
CAF40YNL288W SSA4P22202 642 aaKnown RBP7.25□□□□□ -1.25
CAF40YNL288W RPS7AP26786 190 aaKnown RBP7.25□□□□□ -1.25
CAF40YNL288W RPT3P33298 428 aaKnown RBP7.25□□□□□ -1.25
CAF40YNL288W PTK1P36002 662 aaPredicted RBP7.25□□□□□ -1.25
CAF40YNL288W STV1P37296 890 aa7.25□□□□□ -1.25
CAF40YNL288W VPS4P52917 437 aa7.25□□□□□ -1.25
CAF40YNL288W TY1A-BLQ12266 440 aa7.25□□□□□ -1.25
CAF40YNL288W SNF3P10870 884 aa7.24□□□□□ -1.25
CAF40YNL288W HPR1P17629 752 aaKnown RBP7.24□□□□□ -1.25
CAF40YNL288W SIS2P36024 562 aa7.24□□□□□ -1.25
CAF40YNL288W ENP2P48234 707 aaKnown RBP7.24□□□□□ -1.25
CAF40YNL288W PEP12P32854 288 aa7.23□□□□□ -1.25
CAF40YNL288W MDL2P33311 773 aa7.23□□□□□ -1.25
CAF40YNL288W BOI1P38041 980 aaKnown RBP7.23□□□□□ -1.25
CAF40YNL288W CAF120P53836 1060 aa7.23□□□□□ -1.25
CAF40YNL288W YPL062WQ02781 134 aa7.23□□□□□ -1.25
CAF40YNL288W PBY1P38254 753 aa7.22□□□□□ -1.25
CAF40YNL288W ACO2P39533 789 aa7.22□□□□□ -1.25
CAF40YNL288W UTP7P40055 554 aaKnown RBP7.22□□□□□ -1.25
CAF40YNL288W SLX8P40072 274 aa7.22□□□□□ -1.25
CAF40YNL288W PEA2P40091 420 aa7.22□□□□□ -1.25
CAF40YNL288W KTR7P40504 517 aa7.22□□□□□ -1.25
CAF40YNL288W YFL034WP43564 1073 aa7.22□□□□□ -1.25
CAF40YNL288W MRPS35P53292 345 aa7.22□□□□□ -1.25
CAF40YNL288W FLO1P32768 1537 aa7.22□□□□□ -1.25
CAF40YNL288W AIM9P40053 627 aaKnown RBP7.21□□□□□ -1.26
CAF40YNL288W IOC3P43596 787 aa7.21□□□□□ -1.26
CAF40YNL288W IRC8P47046 822 aa7.21□□□□□ -1.26
CAF40YNL288W PIP2P52960 996 aa7.21□□□□□ -1.26
CAF40YNL288W YDL176WQ12027 708 aa7.21□□□□□ -1.26
CAF40YNL288W GRX7P38068 203 aa7.2□□□□□ -1.26
CAF40YNL288W OSH7P38755 437 aa7.2□□□□□ -1.26
CAF40YNL288W YMR147WP40218 223 aaKnown RBP7.2□□□□□ -1.26
CAF40YNL288W VTC4P47075 721 aa7.2□□□□□ -1.26
CAF40YNL288W MTC3P53077 123 aa7.2□□□□□ -1.26
CAF40YNL288W RMD1Q03441 430 aa7.2□□□□□ -1.26
CAF40YNL288W CBP1P07252 654 aa7.19□□□□□ -1.26
CAF40YNL288W VAS1P07806 1104 aaKnown RBP7.19□□□□□ -1.26
CAF40YNL288W OPI1P21957 404 aa7.19□□□□□ -1.26
CAF40YNL288W DAL1P32375 460 aa7.19□□□□□ -1.26
CAF40YNL288W STM1P39015 273 aaKnown RBP7.19□□□□□ -1.26
CAF40YNL288W MSH4P40965 878 aaPredicted RBP7.19□□□□□ -1.26
CAF40YNL288W NOP2P40991 618 aaKnown RBP7.19□□□□□ -1.26
CAF40YNL288W CWC15Q03772 175 aaKnown RBP7.19□□□□□ -1.26
CAF40YNL288W KAR5Q04746 504 aa7.19□□□□□ -1.26
CAF40YNL288W TAH18Q12181 623 aa7.19□□□□□ -1.26
CAF40YNL288W RGA1P39083 1007 aa7.18□□□□□ -1.26
CAF40YNL288W NIT1P40447 199 aa7.18□□□□□ -1.26
CAF40YNL288W YIL089WP40500 205 aa7.18□□□□□ -1.26
CAF40YNL288W ALA1P40825 983 aaKnown RBP7.18□□□□□ -1.26
CAF40YNL288W SUM1P46676 1062 aa7.18□□□□□ -1.26
CAF40YNL288W PIB2P53191 635 aa7.18□□□□□ -1.26
CAF40YNL288W RIM20Q12033 661 aa7.18□□□□□ -1.26
CAF40YNL288W TSC13Q99190 310 aa7.18□□□□□ -1.26
CAF40YNL288W SWI5P08153 709 aa7.17□□□□□ -1.26
CAF40YNL288W GAL2P13181 574 aa7.17□□□□□ -1.26
CAF40YNL288W TPM1P17536 199 aaKnown RBP7.17□□□□□ -1.26
CAF40YNL288W TTI1P36097 1038 aa7.17□□□□□ -1.26
CAF40YNL288W YIR007WP40566 764 aa7.17□□□□□ -1.26
CAF40YNL288W PCL8Q08966 492 aa7.17□□□□□ -1.26
CAF40YNL288W MET1P36150 593 aa7.16□□□□□ -1.26
CAF40YNL288W SSN3P39073 555 aa7.16□□□□□ -1.26
CAF40YNL288W RRT6P53117 311 aaPredicted RBP7.16□□□□□ -1.26
CAF40YNL288W NSG2P53898 299 aa7.16□□□□□ -1.26
CAF40YNL288W FPR4Q06205 392 aaPredicted RBP7.16□□□□□ -1.26
CAF40YNL288W CSR2Q12734 1121 aa7.16□□□□□ -1.26
CAF40YNL288W LAM4P38800 1345 aa7.16□□□□□ -1.26
CAF40YNL288W PMA1P05030 918 aaKnown RBP7.15□□□□□ -1.26
CAF40YNL288W RPS6AP0CX37 236 aaKnown RBP7.15□□□□□ -1.26
CAF40YNL288W RPS6BP0CX38 236 aaPredicted RBP7.15□□□□□ -1.26
CAF40YNL288W ADP1P25371 1049 aa7.15□□□□□ -1.26
Retrieved 100 of 5,963 RNA–protein pairs in 29.3 ms