RNA–Protein interactions for RNA: YLR412W

BER1, Transcript of Protein involved in microtubule-related processes, yeast

Gene BER1, Length 825 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
BER1	YLR412W	TAF1	P46677	1066 aa		4.87	□□□□□ -1.63
BER1	YLR412W	GCD1	P09032	578 aa	Predicted RBP	4.86	□□□□□ -1.63
BER1	YLR412W	MCM2	P29469	868 aa		4.86	□□□□□ -1.63
BER1	YLR412W	PRP43	P53131	767 aa	Known RBP	4.86	□□□□□ -1.63
BER1	YLR412W	YGR122W	P53272	402 aa		4.86	□□□□□ -1.63
BER1	YLR412W	RCM1	P53972	490 aa		4.86	□□□□□ -1.63
BER1	YLR412W	UTP5	Q04177	643 aa	Known RBP	4.86	□□□□□ -1.63
BER1	YLR412W	YOR059C	Q08448	450 aa	Known RBP	4.86	□□□□□ -1.63
BER1	YLR412W	NSI1	Q12457	570 aa		4.86	□□□□□ -1.63
BER1	YLR412W	NFS1	P25374	497 aa		4.85	□□□□□ -1.63
BER1	YLR412W	RPS26A	P39938	119 aa	Known RBP	4.85	□□□□□ -1.63
BER1	YLR412W	RPS26B	P39939	119 aa	Known RBP	4.85	□□□□□ -1.63
BER1	YLR412W	PIC2	P40035	300 aa		4.85	□□□□□ -1.63
BER1	YLR412W	XKS1	P42826	600 aa		4.85	□□□□□ -1.63
BER1	YLR412W	ALT1	P52893	592 aa		4.85	□□□□□ -1.63
BER1	YLR412W	YGL140C	P53120	1219 aa		4.85	□□□□□ -1.63
BER1	YLR412W	EAR1	Q03212	550 aa		4.85	□□□□□ -1.63
BER1	YLR412W	RRP15	Q06511	250 aa	Predicted RBP	4.85	□□□□□ -1.63
BER1	YLR412W	VMA4	P22203	233 aa	Known RBP	4.84	□□□□□ -1.63
BER1	YLR412W	SMY2	P32909	740 aa	Known RBP	4.84	□□□□□ -1.63
BER1	YLR412W	NNK1	P36003	928 aa		4.84	□□□□□ -1.63
BER1	YLR412W	YAR028W	P39548	234 aa		4.84	□□□□□ -1.63
BER1	YLR412W	GIP4	P39732	760 aa		4.84	□□□□□ -1.63
BER1	YLR412W	MRPS18	P42847	217 aa		4.84	□□□□□ -1.63
BER1	YLR412W	YNR063W	P53749	607 aa		4.84	□□□□□ -1.63
BER1	YLR412W	RAD2	P07276	1031 aa		4.83	□□□□□ -1.64
BER1	YLR412W	HEM13	P11353	328 aa	Known RBP	4.83	□□□□□ -1.64
BER1	YLR412W	GAS1	P22146	559 aa	Known RBP	4.83	□□□□□ -1.64
BER1	YLR412W	RDH54	P38086	958 aa		4.83	□□□□□ -1.64
BER1	YLR412W	SCP160	P06105	1222 aa	Known RBP RIP-Chip data	4.82	□□□□□ -1.64	not detected
BER1	YLR412W	CYC8	P14922	966 aa		4.82	□□□□□ -1.64
BER1	YLR412W	PRE9	P23638	258 aa	Known RBP	4.82	□□□□□ -1.64
BER1	YLR412W	SEC8	P32855	1065 aa		4.82	□□□□□ -1.64
BER1	YLR412W	TSA1	P34760	196 aa	Known RBP	4.82	□□□□□ -1.64
BER1	YLR412W	ATG14	P38270	344 aa		4.82	□□□□□ -1.64
BER1	YLR412W	NMD3	P38861	518 aa	Known RBP	4.82	□□□□□ -1.64
BER1	YLR412W	OYE3	P41816	400 aa	Predicted RBP	4.82	□□□□□ -1.64
BER1	YLR412W	YJR107W	P47145	328 aa		4.82	□□□□□ -1.64
BER1	YLR412W	SPR28	Q04921	423 aa		4.82	□□□□□ -1.64
BER1	YLR412W	CDA2	Q06703	312 aa		4.82	□□□□□ -1.64
BER1	YLR412W	MCD1	Q12158	566 aa		4.82	□□□□□ -1.64
BER1	YLR412W	SEC23	P15303	768 aa	Known RBP	4.81	□□□□□ -1.64
BER1	YLR412W	RET1	P22276	1149 aa	Known RBP	4.81	□□□□□ -1.64
BER1	YLR412W	FYV10	P40492	516 aa		4.81	□□□□□ -1.64
BER1	YLR412W	YLR257W	Q06146	321 aa	Known RBP	4.81	□□□□□ -1.64
BER1	YLR412W	EST2	Q06163	884 aa		4.81	□□□□□ -1.64
BER1	YLR412W	LAP2	Q10740	671 aa		4.81	□□□□□ -1.64
BER1	YLR412W	YVC1	Q12324	675 aa		4.81	□□□□□ -1.64
BER1	YLR412W	DED1	P06634	604 aa	Known RBP	4.8	□□□□□ -1.64
BER1	YLR412W	THI80	P35202	319 aa		4.8	□□□□□ -1.64
BER1	YLR412W	ADD66	P36040	267 aa		4.8	□□□□□ -1.64
BER1	YLR412W	HSE1	P38753	452 aa		4.8	□□□□□ -1.64
BER1	YLR412W	TPP1	Q03796	238 aa		4.8	□□□□□ -1.64
BER1	YLR412W	PUS7	Q08647	676 aa	Known RBP	4.8	□□□□□ -1.64
BER1	YLR412W	ASF1	P32447	279 aa		4.79	□□□□□ -1.64
BER1	YLR412W	PEP7	P32609	515 aa		4.79	□□□□□ -1.64
BER1	YLR412W	OYE2	Q03558	400 aa	Known RBP	4.79	□□□□□ -1.64
BER1	YLR412W	RSA3	Q05942	220 aa	Known RBP	4.79	□□□□□ -1.64
BER1	YLR412W	HDA2	Q06629	674 aa		4.79	□□□□□ -1.64
BER1	YLR412W	TRE1	Q08919	783 aa		4.79	□□□□□ -1.64
BER1	YLR412W	ADP1	P25371	1049 aa		4.78	□□□□□ -1.64
BER1	YLR412W	RKM2	Q03942	479 aa		4.78	□□□□□ -1.64
BER1	YLR412W	PRO1	P32264	428 aa		4.77	□□□□□ -1.65
BER1	YLR412W	QNS1	P38795	714 aa	Known RBP	4.77	□□□□□ -1.65
BER1	YLR412W	PEX7	P39108	375 aa		4.77	□□□□□ -1.65
BER1	YLR412W	SSY1	Q03770	852 aa		4.77	□□□□□ -1.65
BER1	YLR412W	GCR1	P07261	785 aa		4.76	□□□□□ -1.65
BER1	YLR412W	TAF13	P11747	167 aa		4.76	□□□□□ -1.65
BER1	YLR412W	AFG2	P32794	780 aa		4.76	□□□□□ -1.65
BER1	YLR412W	HSP78	P33416	811 aa		4.76	□□□□□ -1.65
BER1	YLR412W	ROD1	Q02805	837 aa		4.76	□□□□□ -1.65
BER1	YLR412W	MRL1	Q06815	381 aa		4.76	□□□□□ -1.65
BER1	YLR412W	PTC7	P38797	343 aa		4.75	□□□□□ -1.65
BER1	YLR412W	YJL045W	P47052	634 aa		4.75	□□□□□ -1.65
BER1	YLR412W	VPS53	P47061	822 aa		4.75	□□□□□ -1.65
BER1	YLR412W	ESF1	Q06344	628 aa	Known RBP	4.75	□□□□□ -1.65
BER1	YLR412W	HRK1	Q08732	759 aa	Known RBP	4.75	□□□□□ -1.65
BER1	YLR412W	PTC5	Q12511	572 aa		4.75	□□□□□ -1.65
BER1	YLR412W	FLR1	P38124	548 aa		4.74	□□□□□ -1.65
BER1	YLR412W	ALG3	P38179	458 aa		4.74	□□□□□ -1.65
BER1	YLR412W	GTS1	P40956	396 aa		4.74	□□□□□ -1.65
BER1	YLR412W	SIW14	P53965	281 aa		4.74	□□□□□ -1.65
BER1	YLR412W	RAT1	Q02792	1006 aa	Known RBP	4.74	□□□□□ -1.65
BER1	YLR412W	KIP1	P28742	1111 aa		4.73	□□□□□ -1.65
BER1	YLR412W	YHL012W	P38709	493 aa		4.73	□□□□□ -1.65
BER1	YLR412W	HXT13	P39924	564 aa		4.73	□□□□□ -1.65
BER1	YLR412W	GNP1	P48813	663 aa		4.73	□□□□□ -1.65
BER1	YLR412W	HXT17	P53631	564 aa		4.73	□□□□□ -1.65
BER1	YLR412W	HXT15	P54854	567 aa		4.73	□□□□□ -1.65
BER1	YLR412W	LPX1	Q12405	387 aa	Known RBP	4.73	□□□□□ -1.65
BER1	YLR412W	SAM35	P14693	329 aa		4.72	□□□□□ -1.65
BER1	YLR412W	PRP6	P19735	899 aa	Predicted RBP	4.72	□□□□□ -1.65
BER1	YLR412W	MKK2	P32491	506 aa		4.72	□□□□□ -1.65
BER1	YLR412W	GPB2	P39717	880 aa		4.72	□□□□□ -1.65
BER1	YLR412W	ORC3	P54790	616 aa		4.72	□□□□□ -1.65
BER1	YLR412W	RMD1	Q03441	430 aa		4.72	□□□□□ -1.65
BER1	YLR412W	YSC84	P32793	468 aa		4.71	□□□□□ -1.66
BER1	YLR412W	MDL2	P33311	773 aa		4.71	□□□□□ -1.66
BER1	YLR412W	SYP1	P25623	870 aa	Known RBP	4.7	□□□□□ -1.66
BER1	YLR412W	RAD27	P26793	382 aa		4.7	□□□□□ -1.66

Retrieved 100 of 5,963 RNA–protein pairs in 57.7 ms