RNA–Protein interactions for RNA: ENST00000561276.5

LRRC28-221, Transcript of leucine rich repeat containing 28, humanhuman

TSL 5

Gene LRRC28, Length 967 nt, Biotype protein coding, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-221ENST00000561276 U2AF1L5P0DN76 240 aaPredicted RBP13.74□□□□□ -0.21
LRRC28-221ENST00000561276 U2AF1Q01081 240 aaKnown RBP eCLIP13.74□□□□□ -0.21
LRRC28-221ENST00000561276 MYT1Q01538 1121 aa13.74□□□□□ -0.21
LRRC28-221ENST00000561276 AEBP1Q8IUX7 1158 aa13.74□□□□□ -0.21
LRRC28-221ENST00000561276 SEPT12Q8IYM1 358 aa13.74□□□□□ -0.21
LRRC28-221ENST00000561276 RAPGEF4Q8WZA2 1011 aa13.74□□□□□ -0.21
LRRC28-221ENST00000561276 CDCA7Q9BWT1 371 aaPredicted RBP13.74□□□□□ -0.21
LRRC28-221ENST00000561276 NCAPD2Q15021 1401 aa13.73□□□□□ -0.21
LRRC28-221ENST00000561276 PARP4Q9UKK3 1724 aaKnown RBP13.73□□□□□ -0.21
LRRC28-221ENST00000561276 MRS2Q9HD23 443 aa13.73□□□□□ -0.21
LRRC28-221ENST00000561276 THSD7AQ9UPZ6 1657 aa13.72□□□□□ -0.21
LRRC28-221ENST00000561276 EXOC5O00471 708 aa13.72□□□□□ -0.21
LRRC28-221ENST00000561276 TATP17735 454 aaPredicted RBP13.72□□□□□ -0.21
LRRC28-221ENST00000561276 DISP2A7MBM2 1401 aa13.72□□□□□ -0.21
LRRC28-221ENST00000561276 KDRP35968 1356 aa13.71□□□□□ -0.21
LRRC28-221ENST00000561276 FCHSD2O94868 740 aa13.71□□□□□ -0.21
LRRC28-221ENST00000561276 DDB1Q16531 1140 aa13.71□□□□□ -0.21
LRRC28-221ENST00000561276 MEGF6O75095 1541 aa13.7□□□□□ -0.22
LRRC28-221ENST00000561276 WDR43Q15061 677 aaKnown RBP eCLIP13.7□□□□□ -0.22
LRRC28-221ENST00000561276 ZCRB1Q8TBF4 217 aaKnown RBP13.7□□□□□ -0.22
LRRC28-221ENST00000561276 ADAMTS8Q9UP79 889 aa13.7□□□□□ -0.22
LRRC28-221ENST00000561276 LRRC37A3O60309 1634 aa13.69□□□□□ -0.22
LRRC28-221ENST00000561276 CCER2I3L3R5 266 aa13.69□□□□□ -0.22
LRRC28-221ENST00000561276 PDE3BQ13370 1112 aa13.69□□□□□ -0.22
LRRC28-221ENST00000561276 PNISRQ8TF01 805 aaKnown RBP13.69□□□□□ -0.22
LRRC28-221ENST00000561276 RSPH6AQ9H0K4 717 aa13.69□□□□□ -0.22
LRRC28-221ENST00000561276 PKD1L3Q7Z443 1732 aa13.68□□□□□ -0.22
LRRC28-221ENST00000561276 SHANK3Q9BYB0 1731 aa13.68□□□□□ -0.22
LRRC28-221ENST00000561276 OVOS2A0A0G2JMS6 1433 aa13.68□□□□□ -0.22
LRRC28-221ENST00000561276 RGS12O14924 1447 aa13.68□□□□□ -0.22
LRRC28-221ENST00000561276 PRKAR2BP31323 418 aa13.68□□□□□ -0.22
LRRC28-221ENST00000561276 DDX54Q8TDD1 881 aaKnown RBP13.68□□□□□ -0.22
LRRC28-221ENST00000561276 PNNQ9H307 717 aaKnown RBP13.68□□□□□ -0.22
LRRC28-221ENST00000561276 SPG7Q9UQ90 795 aa13.68□□□□□ -0.22
LRRC28-221ENST00000561276 PLEKHO1Q53GL0 409 aaPredicted RBP13.67□□□□□ -0.22
LRRC28-221ENST00000561276 KRT27Q7Z3Y8 459 aa13.67□□□□□ -0.22
LRRC28-221ENST00000561276 PHACTR3Q96KR7 559 aa13.67□□□□□ -0.22
LRRC28-221ENST00000561276 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.67□□□□□ -0.221e-7■■■□□ 18.9
LRRC28-221ENST00000561276 AMOTQ4VCS5 1084 aa13.66□□□□□ -0.22
LRRC28-221ENST00000561276 FAM182BQ5T319 152 aa13.66□□□□□ -0.22
LRRC28-221ENST00000561276 FAM9BQ8IZU0 186 aa13.66□□□□□ -0.22
LRRC28-221ENST00000561276 MARCH10Q8NA82 808 aaPredicted RBP13.66□□□□□ -0.22
LRRC28-221ENST00000561276 PLEKHF1Q96S99 279 aa13.66□□□□□ -0.22
LRRC28-221ENST00000561276 SPINK5Q9NQ38 1064 aaPredicted RBP13.65□□□□□ -0.22
LRRC28-221ENST00000561276 TNS2Q63HR2 1409 aa13.64□□□□□ -0.23
LRRC28-221ENST00000561276 VIRMAQ69YN4 1812 aaKnown RBP13.64□□□□□ -0.23
LRRC28-221ENST00000561276 CYP27B1O15528 508 aa13.64□□□□□ -0.23
LRRC28-221ENST00000561276 NEFMP07197 916 aa13.64□□□□□ -0.23
LRRC28-221ENST00000561276 MTHFSDQ2M296 383 aaKnown RBP13.64□□□□□ -0.23
LRRC28-221ENST00000561276 ILDR2Q71H61 639 aa13.64□□□□□ -0.23
LRRC28-221ENST00000561276 CCDC146Q8IYE0 955 aa13.64□□□□□ -0.23
LRRC28-221ENST00000561276 DLG5Q8TDM6 1919 aa13.64□□□□□ -0.23
LRRC28-221ENST00000561276 PCDH11XQ9BZA7 1347 aa13.64□□□□□ -0.23
LRRC28-221ENST00000561276 PCDH11YQ9BZA8 1340 aa13.64□□□□□ -0.23
LRRC28-221ENST00000561276 PLEKHG2Q9H7P9 1386 aa13.63□□□□□ -0.23
LRRC28-221ENST00000561276 SLC4A2P04920 1241 aa13.63□□□□□ -0.23
LRRC28-221ENST00000561276 ZNF530Q6P9A1 599 aaPredicted RBP13.63□□□□□ -0.23
LRRC28-221ENST00000561276 IFNL2Q8IZJ0 200 aa13.63□□□□□ -0.23
LRRC28-221ENST00000561276 RUNDC1Q96C34 613 aa13.63□□□□□ -0.23
LRRC28-221ENST00000561276 SBF2Q86WG5 1849 aa13.62□□□□□ -0.23
LRRC28-221ENST00000561276 CAPN15O75808 1086 aa13.62□□□□□ -0.23
LRRC28-221ENST00000561276 PHKG2P15735 406 aa13.62□□□□□ -0.23
LRRC28-221ENST00000561276 KAT6BQ8WYB5 2073 aa13.62□□□□□ -0.23
LRRC28-221ENST00000561276 MAPK8IP3Q9UPT6 1336 aa13.62□□□□□ -0.23
LRRC28-221ENST00000561276 C1orf141Q5JVX7 400 aa13.61□□□□□ -0.23
LRRC28-221ENST00000561276 FAM196AQ6ZSG2 479 aa13.61□□□□□ -0.23
LRRC28-221ENST00000561276 NKX1-1Q15270 411 aaPredicted RBP13.6□□□□□ -0.23
LRRC28-221ENST00000561276 AKAP4Q5JQC9 854 aa13.6□□□□□ -0.23
LRRC28-221ENST00000561276 GAS2L2Q8NHY3 880 aa13.6□□□□□ -0.23
LRRC28-221ENST00000561276 SCN11AQ9UI33 1791 aa13.59□□□□□ -0.23
LRRC28-221ENST00000561276 ITGB4P16144 1822 aa13.59□□□□□ -0.23
LRRC28-221ENST00000561276 GNAT3A8MTJ3 354 aa13.58□□□□□ -0.24
LRRC28-221ENST00000561276 APAF1O14727 1248 aa13.58□□□□□ -0.24
LRRC28-221ENST00000561276 HSP90AB1P08238 724 aaKnown RBP13.58□□□□□ -0.24
LRRC28-221ENST00000561276 DSG3P32926 999 aa13.58□□□□□ -0.24
LRRC28-221ENST00000561276 NEUROD2Q15784 382 aa13.58□□□□□ -0.24
LRRC28-221ENST00000561276 NFE2L2Q16236 605 aa13.58□□□□□ -0.24
LRRC28-221ENST00000561276 MPRIPQ6WCQ1 1025 aa13.58□□□□□ -0.24
LRRC28-221ENST00000561276 DCAF5Q96JK2 942 aa13.58□□□□□ -0.24
LRRC28-221ENST00000561276 LGR6Q9HBX8 967 aa13.58□□□□□ -0.24
LRRC28-221ENST00000561276 DOT1LQ8TEK3 1739 aa13.58□□□□□ -0.24
LRRC28-221ENST00000561276 ZBTB22O15209 634 aa13.57□□□□□ -0.24
LRRC28-221ENST00000561276 TMPOP42166 694 aaKnown RBP13.57□□□□□ -0.24
LRRC28-221ENST00000561276 RIPK4P57078 832 aa13.57□□□□□ -0.24
LRRC28-221ENST00000561276 ACSBG1Q96GR2 724 aa13.57□□□□□ -0.24
LRRC28-221ENST00000561276 TOGARAM1Q9Y4F4 1720 aa13.56□□□□□ -0.24
LRRC28-221ENST00000561276 SENP3-EIF4A1A0A087X0R7 540 aa13.56□□□□□ -0.24
LRRC28-221ENST00000561276 KCNQ2O43526 872 aa13.56□□□□□ -0.24
LRRC28-221ENST00000561276 PRIM1P49642 420 aaKnown RBP13.56□□□□□ -0.24
LRRC28-221ENST00000561276 RRP7AQ9Y3A4 280 aaKnown RBP13.56□□□□□ -0.24
LRRC28-221ENST00000561276 BCL9O00512 1426 aa13.56□□□□□ -0.24
LRRC28-221ENST00000561276 RNMTO43148 476 aaKnown RBP13.55□□□□□ -0.24
LRRC28-221ENST00000561276 HTATSF1O43719 755 aaKnown RBP13.55□□□□□ -0.24
LRRC28-221ENST00000561276 TRIM37O94972 964 aa13.55□□□□□ -0.24
LRRC28-221ENST00000561276 IL17REQ8NFR9 667 aa13.55□□□□□ -0.24
LRRC28-221ENST00000561276 RTF1Q92541 710 aaKnown RBP13.55□□□□□ -0.24
LRRC28-221ENST00000561276 SYTL4Q96C24 671 aaPredicted RBP13.55□□□□□ -0.24
LRRC28-221ENST00000561276 MAP3K5Q99683 1374 aa13.55□□□□□ -0.24
LRRC28-221ENST00000561276 ADAMTS7Q9UKP4 1686 aa13.54□□□□□ -0.24
LRRC28-221ENST00000561276 ERVV-2B6SEH9 535 aa13.54□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms