RNA–Protein interactions for RNA: ENST00000555518.5

LINC00643-203, long intergenic non-protein coding RNA 643, humanhuman

TSL 4

Gene LINC00643, Length 552 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-203ENST00000555518 SPINT1O43278 529 aa10.04□□□□□ -0.8
LINC00643-203ENST00000555518 PTSQ03393 145 aa10.04□□□□□ -0.8
LINC00643-203ENST00000555518 ARHGAP9Q9BRR9 750 aa10.04□□□□□ -0.8
LINC00643-203ENST00000555518 NUP160Q12769 1436 aa10.04□□□□□ -0.8
LINC00643-203ENST00000555518 CEP170Q5SW79 1584 aa10.04□□□□□ -0.8
LINC00643-203ENST00000555518 ARAP1Q96P48 1450 aa10.04□□□□□ -0.8
LINC00643-203ENST00000555518 ARHGAP35Q9NRY4 1499 aa10.04□□□□□ -0.8
LINC00643-203ENST00000555518 TRIM52Q96A61 297 aa10.02□□□□□ -0.81
LINC00643-203ENST00000555518 KCTD15Q96SI1 283 aaPredicted RBP10.02□□□□□ -0.81
LINC00643-203ENST00000555518 FKBPLQ9UIM3 349 aa10.02□□□□□ -0.81
LINC00643-203ENST00000555518 GPSM3Q9Y4H4 160 aa10.02□□□□□ -0.81
LINC00643-203ENST00000555518 ZBTB33Q86T24 672 aa10.01□□□□□ -0.81
LINC00643-203ENST00000555518 PNMA1Q8ND90 353 aa10.01□□□□□ -0.81
LINC00643-203ENST00000555518 CHD1O14646 1710 aa10.01□□□□□ -0.81
LINC00643-203ENST00000555518 KIAA0586Q9BVV6 1533 aa10.01□□□□□ -0.81
LINC00643-203ENST00000555518 IQGAP2Q13576 1575 aa10.01□□□□□ -0.81
LINC00643-203ENST00000555518 SAMD9Q5K651 1589 aa10.01□□□□□ -0.81
LINC00643-203ENST00000555518 PTK2Q05397 1052 aa9.99□□□□□ -0.81
LINC00643-203ENST00000555518 CTDSPL2Q05D32 466 aa9.99□□□□□ -0.81
LINC00643-203ENST00000555518 CCDC155Q8N6L0 562 aa9.99□□□□□ -0.81
LINC00643-203ENST00000555518 CNTNAP3BQ96NU0 1288 aa9.99□□□□□ -0.81
LINC00643-203ENST00000555518 CNTNAP3Q9BZ76 1288 aa9.99□□□□□ -0.81
LINC00643-203ENST00000555518 EFCAB5A4FU69 1503 aa9.98□□□□□ -0.81
LINC00643-203ENST00000555518 UGGT2Q9NYU1 1516 aa9.98□□□□□ -0.81
LINC00643-203ENST00000555518 NBPF20Q3BBV1 942 aa9.98□□□□□ -0.81
LINC00643-203ENST00000555518 TMEM151AQ8N4L1 468 aa9.98□□□□□ -0.81
LINC00643-203ENST00000555518 CHMP7Q8WUX9 453 aaPredicted RBP9.98□□□□□ -0.81
LINC00643-203ENST00000555518 POLR3EQ9NVU0 708 aa9.98□□□□□ -0.81
LINC00643-203ENST00000555518 VPS8Q8N3P4 1428 aa9.98□□□□□ -0.81
LINC00643-203ENST00000555518 CBLBQ13191 982 aa9.97□□□□□ -0.81
LINC00643-203ENST00000555518 COL25A1Q9BXS0 654 aaPredicted RBP9.97□□□□□ -0.81
LINC00643-203ENST00000555518 SLC35F4A4IF30 521 aa9.96□□□□□ -0.82
LINC00643-203ENST00000555518 FIGNL2A6NMB9 653 aa9.96□□□□□ -0.82
LINC00643-203ENST00000555518 KRT76Q01546 638 aa9.96□□□□□ -0.82
LINC00643-203ENST00000555518 GPR161Q8N6U8 529 aaKnown RBP9.96□□□□□ -0.82
LINC00643-203ENST00000555518 SLC24A3Q9HC58 644 aa9.96□□□□□ -0.82
LINC00643-203ENST00000555518 ADAMTS8Q9UP79 889 aa9.96□□□□□ -0.82
LINC00643-203ENST00000555518 GDF11O95390 407 aa9.95□□□□□ -0.82
LINC00643-203ENST00000555518 RANGAP1P46060 587 aaPredicted RBP9.95□□□□□ -0.82
LINC00643-203ENST00000555518 SKIV2LQ15477 1246 aaKnown RBP9.95□□□□□ -0.82
LINC00643-203ENST00000555518 SV2AQ7L0J3 742 aa9.95□□□□□ -0.82
LINC00643-203ENST00000555518 FHOD3Q2V2M9 1422 aa9.95□□□□□ -0.82
LINC00643-203ENST00000555518 CLASP1Q7Z460 1538 aa9.94□□□□□ -0.82
LINC00643-203ENST00000555518 DISP1Q96F81 1524 aa9.94□□□□□ -0.82
LINC00643-203ENST00000555518 ITGA6P23229 1130 aa9.94□□□□□ -0.82
LINC00643-203ENST00000555518 RASSF7Q02833 373 aa9.94□□□□□ -0.82
LINC00643-203ENST00000555518 INTS6LQ5JSJ4 861 aaKnown RBP9.94□□□□□ -0.82
LINC00643-203ENST00000555518 LOC100996750A0A140TA64 210 aa9.93□□□□□ -0.82
LINC00643-203ENST00000555518 SLURP2P0DP57 97 aa9.93□□□□□ -0.82
LINC00643-203ENST00000555518 GSK3AP49840 483 aa9.93□□□□□ -0.82
LINC00643-203ENST00000555518 SVOPQ8N4V2 548 aa9.93□□□□□ -0.82
LINC00643-203ENST00000555518 KRTAP4-6Q9BYQ5 205 aa9.93□□□□□ -0.82
LINC00643-203ENST00000555518 KIAA0556O60303 1618 aa9.93□□□□□ -0.82
LINC00643-203ENST00000555518 SHROOM2Q13796 1616 aa9.93□□□□□ -0.82
LINC00643-203ENST00000555518 SH3D19Q5HYK7 790 aa9.92□□□□□ -0.82
LINC00643-203ENST00000555518 PPP2R2DQ66LE6 453 aa9.92□□□□□ -0.82
LINC00643-203ENST00000555518 KCTD17Q8N5Z5 321 aa9.92□□□□□ -0.82
LINC00643-203ENST00000555518 LRRN4Q8WUT4 740 aa9.91□□□□□ -0.82
LINC00643-203ENST00000555518 POLMQ9NP87 494 aaPredicted RBP9.91□□□□□ -0.82
LINC00643-203ENST00000555518 CTSOP43234 321 aaPredicted RBP9.9□□□□□ -0.82
LINC00643-203ENST00000555518 RELBQ01201 579 aa9.9□□□□□ -0.82
LINC00643-203ENST00000555518 NR6A1Q15406 480 aa9.9□□□□□ -0.82
LINC00643-203ENST00000555518 ZNF385CQ66K41 422 aaPredicted RBP9.9□□□□□ -0.82
LINC00643-203ENST00000555518 DDRGK1Q96HY6 314 aa9.9□□□□□ -0.82
LINC00643-203ENST00000555518 PCF11O94913 1555 aaKnown RBP9.89□□□□□ -0.83
LINC00643-203ENST00000555518 CDC14CA4D256 554 aa9.89□□□□□ -0.83
LINC00643-203ENST00000555518 SUZ12Q15022 739 aaKnown RBP9.89□□□□□ -0.83
LINC00643-203ENST00000555518 VWA5B2Q8N398 1253 aa9.89□□□□□ -0.83
LINC00643-203ENST00000555518 ADAM32Q8TC27 787 aa9.89□□□□□ -0.83
LINC00643-203ENST00000555518 INSM2Q96T92 566 aaPredicted RBP9.89□□□□□ -0.83
LINC00643-203ENST00000555518 GNL3Q9BVP2 549 aaKnown RBP eCLIP9.89□□□□□ -0.83
LINC00643-203ENST00000555518 ADH1AP07327 375 aa9.88□□□□□ -0.83
LINC00643-203ENST00000555518 KANK3Q6NY19 840 aa9.88□□□□□ -0.83
LINC00643-203ENST00000555518 SEPT12Q8IYM1 358 aa9.88□□□□□ -0.83
LINC00643-203ENST00000555518 RNF217Q8TC41 542 aa9.88□□□□□ -0.83
LINC00643-203ENST00000555518 AGBL1Q96MI9 1066 aa9.88□□□□□ -0.83
LINC00643-203ENST00000555518 IGHA1P01876 353 aa9.87□□□□□ -0.83
LINC00643-203ENST00000555518 RNFT1Q5M7Z0 435 aa9.87□□□□□ -0.83
LINC00643-203ENST00000555518 SCARF2Q96GP6 870 aaPredicted RBP9.87□□□□□ -0.83
LINC00643-203ENST00000555518 ATP1B4Q9UN42 357 aaPredicted RBP9.87□□□□□ -0.83
LINC00643-203ENST00000555518 FMN1Q68DA7 1419 aa9.87□□□□□ -0.83
LINC00643-203ENST00000555518 CASKIN1Q8WXD9 1431 aa9.87□□□□□ -0.83
LINC00643-203ENST00000555518 MARSP56192 900 aaKnown RBP9.86□□□□□ -0.83
LINC00643-203ENST00000555518 FOXK2Q01167 660 aa9.86□□□□□ -0.83
LINC00643-203ENST00000555518 DZIP3Q86Y13 1208 aaKnown RBP9.86□□□□□ -0.83
LINC00643-203ENST00000555518 CCDC125Q86Z20 511 aa9.86□□□□□ -0.83
LINC00643-203ENST00000555518 GMCL1Q96IK5 515 aa9.86□□□□□ -0.83
LINC00643-203ENST00000555518 DNMT3AQ9Y6K1 912 aaPredicted RBP9.86□□□□□ -0.83
LINC00643-203ENST00000555518 FYCO1Q9BQS8 1478 aa9.85□□□□□ -0.83
LINC00643-203ENST00000555518 ERCC6L2Q5T890 1561 aa9.85□□□□□ -0.83
LINC00643-203ENST00000555518 PRG4Q92954 1404 aaPredicted RBP9.85□□□□□ -0.83
LINC00643-203ENST00000555518 AP1G2O75843 785 aa9.85□□□□□ -0.83
LINC00643-203ENST00000555518 ARHGEF15O94989 841 aa9.85□□□□□ -0.83
LINC00643-203ENST00000555518 OCSTAMPQ9BR26 566 aa9.85□□□□□ -0.83
LINC00643-203ENST00000555518 MAP3K1Q13233 1512 aa9.84□□□□□ -0.83
LINC00643-203ENST00000555518 PRKCSHP14314 528 aaPredicted RBP9.84□□□□□ -0.83
LINC00643-203ENST00000555518 PTGIRP43119 386 aa9.84□□□□□ -0.83
LINC00643-203ENST00000555518 MAP3K10Q02779 954 aa9.84□□□□□ -0.83
LINC00643-203ENST00000555518 SRSF11Q05519 484 aaKnown RBP9.84□□□□□ -0.83
LINC00643-203ENST00000555518 LYSMD3Q7Z3D4 306 aa9.84□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms