RNA–Protein interactions for RNA: ENST00000555518.5

LINC00643-203, long intergenic non-protein coding RNA 643, humanhuman

TSL 4

Gene LINC00643, Length 552 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-203ENST00000555518 AEBP2Q6ZN18 517 aaPredicted RBP29.74■■■□□ 2.35
LINC00643-203ENST00000555518 CHIC1Q5VXU3 224 aa28.31■■■□□ 2.12
LINC00643-203ENST00000555518 SENP3Q9H4L4 574 aaPredicted RBP25.6■■□□□ 1.69
LINC00643-203ENST00000555518 PHF23Q9BUL5 403 aaPredicted RBP25.15■■□□□ 1.62
LINC00643-203ENST00000555518 FOXD1Q16676 465 aa23.71■■□□□ 1.39
LINC00643-203ENST00000555518 PLPPR3Q6T4P5 718 aa22.67■■□□□ 1.22
LINC00643-203ENST00000555518 MSH5O43196 834 aa22.4■■□□□ 1.18
LINC00643-203ENST00000555518 PIAS4Q8N2W9 510 aaPredicted RBP22.2■■□□□ 1.14
LINC00643-203ENST00000555518 PPP6R1Q9UPN7 881 aa22.04■■□□□ 1.12
LINC00643-203ENST00000555518 ADRA2BP18089 450 aa21.99■■□□□ 1.11
LINC00643-203ENST00000555518 POTEDQ86YR6 584 aa21.82■■□□□ 1.08
LINC00643-203ENST00000555518 SCAF1Q9H7N4 1312 aaKnown RBP20.39■□□□□ 0.85
LINC00643-203ENST00000555518 DMRT2Q9Y5R5 561 aa20.24■□□□□ 0.83
LINC00643-203ENST00000555518 MAPK8IP2Q13387 824 aaPredicted RBP20.18■□□□□ 0.82
LINC00643-203ENST00000555518 PPP4R3CPQ6ZMV5 832 aa19.77■□□□□ 0.76
LINC00643-203ENST00000555518 CNKSR2Q8WXI2 1034 aa19.49■□□□□ 0.71
LINC00643-203ENST00000555518 HOXD11P31277 338 aaPredicted RBP19.47■□□□□ 0.71
LINC00643-203ENST00000555518 DCAF8L1A6NGE4 600 aa19.36■□□□□ 0.69
LINC00643-203ENST00000555518 RNF216Q9NWF9 866 aaPredicted RBP19.34■□□□□ 0.69
LINC00643-203ENST00000555518 CACNB1Q02641 598 aaPredicted RBP19.18■□□□□ 0.66
LINC00643-203ENST00000555518 NCBP3Q53F19 620 aaKnown RBP19.14■□□□□ 0.65
LINC00643-203ENST00000555518 RNF39Q9H2S5 420 aa19.01■□□□□ 0.63
LINC00643-203ENST00000555518 DNAJC5BQ9UF47 199 aa18.97■□□□□ 0.63
LINC00643-203ENST00000555518 C1QBPQ07021 282 aaKnown RBP18.83■□□□□ 0.6
LINC00643-203ENST00000555518 NPM3O75607 178 aaKnown RBP18.69■□□□□ 0.58
LINC00643-203ENST00000555518 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.56■□□□□ 0.56
LINC00643-203ENST00000555518 KCNA4P22459 653 aa18.22■□□□□ 0.51
LINC00643-203ENST00000555518 U3KPZ7 1027 aaPredicted RBP18.08■□□□□ 0.48
LINC00643-203ENST00000555518 CAPN15O75808 1086 aa17.86■□□□□ 0.45
LINC00643-203ENST00000555518 APLP2Q06481 763 aa17.85■□□□□ 0.45
LINC00643-203ENST00000555518 SLC4A2P04920 1241 aa17.82■□□□□ 0.44
LINC00643-203ENST00000555518 SPINK5Q9NQ38 1064 aaPredicted RBP17.79■□□□□ 0.44
LINC00643-203ENST00000555518 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.78■□□□□ 0.44
LINC00643-203ENST00000555518 HNRNPUL2Q1KMD3 747 aaKnown RBP17.78■□□□□ 0.44
LINC00643-203ENST00000555518 DSG3P32926 999 aa17.76■□□□□ 0.43
LINC00643-203ENST00000555518 ZNF219Q9P2Y4 722 aaPredicted RBP17.63■□□□□ 0.41
LINC00643-203ENST00000555518 SAMD1Q6SPF0 538 aaPredicted RBP17.62■□□□□ 0.41
LINC00643-203ENST00000555518 TRHP20396 242 aaPredicted RBP17.53■□□□□ 0.4
LINC00643-203ENST00000555518 MYCNP04198 464 aaPredicted RBP17.39■□□□□ 0.37
LINC00643-203ENST00000555518 ABCB7O75027 752 aa17.35■□□□□ 0.37
LINC00643-203ENST00000555518 SLC4A1APQ9BWU0 796 aaKnown RBP17.27■□□□□ 0.36
LINC00643-203ENST00000555518 FOXD4L1Q9NU39 408 aa17.14■□□□□ 0.33
LINC00643-203ENST00000555518 POTEHQ6S545 545 aa17.13■□□□□ 0.33
LINC00643-203ENST00000555518 RBM42Q9BTD8 480 aaKnown RBP17.11■□□□□ 0.33
LINC00643-203ENST00000555518 POLA2Q14181 598 aa17.06■□□□□ 0.32
LINC00643-203ENST00000555518 ZBTB12Q9Y330 459 aaPredicted RBP16.9■□□□□ 0.3
LINC00643-203ENST00000555518 ATF5Q9Y2D1 282 aaPredicted RBP16.79■□□□□ 0.28
LINC00643-203ENST00000555518 ATXN8OSP0DMR3 200 aa16.72■□□□□ 0.27
LINC00643-203ENST00000555518 ZBTB22O15209 634 aa16.68■□□□□ 0.26
LINC00643-203ENST00000555518 CHRDL2Q6WN34 429 aa16.64■□□□□ 0.25
LINC00643-203ENST00000555518 AKT1S1Q96B36 256 aa16.64■□□□□ 0.25
LINC00643-203ENST00000555518 OSCARQ8IYS5 282 aa16.48■□□□□ 0.23
LINC00643-203ENST00000555518 REM2Q8IYK8 340 aaPredicted RBP16.4■□□□□ 0.22
LINC00643-203ENST00000555518 FBLN2P98095 1184 aa16.39■□□□□ 0.21
LINC00643-203ENST00000555518 SPDYE2BA6NHP3 402 aa16.29■□□□□ 0.2
LINC00643-203ENST00000555518 SPDYE6P0CI01 402 aa16.29■□□□□ 0.2
LINC00643-203ENST00000555518 SPDYE2Q495Y8 402 aa16.29■□□□□ 0.2
LINC00643-203ENST00000555518 PITPNM1O00562 1244 aa16.2■□□□□ 0.18
LINC00643-203ENST00000555518 PIP4P2Q8N4L2 257 aa16.18■□□□□ 0.18
LINC00643-203ENST00000555518 FXR2P51116 673 aaKnown RBP eCLIP16.12■□□□□ 0.17
LINC00643-203ENST00000555518 MKRN4PQ13434 485 aaPredicted RBP16.05■□□□□ 0.16
LINC00643-203ENST00000555518 SP7Q8TDD2 431 aaPredicted RBP16.05■□□□□ 0.16
LINC00643-203ENST00000555518 SPDYE1Q8NFV5 336 aaPredicted RBP16.03■□□□□ 0.16
LINC00643-203ENST00000555518 ZNF692Q9BU19 519 aaPredicted RBP16.03■□□□□ 0.16
LINC00643-203ENST00000555518 SSUH2Q9Y2M2 353 aa16■□□□□ 0.15
LINC00643-203ENST00000555518 HAX1O00165 279 aa15.95■□□□□ 0.14
LINC00643-203ENST00000555518 CSRNP3Q8WYN3 585 aa15.91■□□□□ 0.14
LINC00643-203ENST00000555518 CLEC11AQ9Y240 323 aa15.9■□□□□ 0.14
LINC00643-203ENST00000555518 PRKAR2AP13861 404 aaKnown RBP15.81■□□□□ 0.12
LINC00643-203ENST00000555518 PABPN1Q86U42 306 aaKnown RBP eCLIP15.75■□□□□ 0.11
LINC00643-203ENST00000555518 PRR29P0C7W0 189 aa15.69■□□□□ 0.1
LINC00643-203ENST00000555518 EHMT2Q96KQ7 1210 aa15.64■□□□□ 0.09
LINC00643-203ENST00000555518 C19orf67A6NJJ6 358 aa15.6■□□□□ 0.09
LINC00643-203ENST00000555518 EVX2Q03828 476 aa15.58■□□□□ 0.08
LINC00643-203ENST00000555518 CHADLQ6NUI6 762 aa15.52■□□□□ 0.08
LINC00643-203ENST00000555518 STAG3Q9UJ98 1225 aa15.46■□□□□ 0.07
LINC00643-203ENST00000555518 FARP1Q9Y4F1 1045 aaPredicted RBP15.39■□□□□ 0.05
LINC00643-203ENST00000555518 SPDYE4A6NLX3 237 aa15.37■□□□□ 0.05
LINC00643-203ENST00000555518 GABBR2O75899 941 aa15.36■□□□□ 0.05
LINC00643-203ENST00000555518 CLCN6P51797 869 aa15.35■□□□□ 0.05
LINC00643-203ENST00000555518 CD44P16070 742 aaKnown RBP15.31■□□□□ 0.04
LINC00643-203ENST00000555518 CREBZFQ9NS37 354 aa15.2■□□□□ 0.02
LINC00643-203ENST00000555518 ZNF579Q8NAF0 562 aaKnown RBP15.11■□□□□ 0.01
LINC00643-203ENST00000555518 PAK3O75914 559 aaPredicted RBP15.08■□□□□ 0
LINC00643-203ENST00000555518 NPM1P06748 294 aaKnown RBP eCLIP15.08■□□□□ 0
LINC00643-203ENST00000555518 ZRANB1Q9UGI0 708 aa15.08■□□□□ 0
LINC00643-203ENST00000555518 LHX8Q68G74 356 aa15.04■□□□□ -0
LINC00643-203ENST00000555518 DCBLD2Q96PD2 775 aa15.01□□□□□ -0.01
LINC00643-203ENST00000555518 PROM2Q8N271 834 aa14.99□□□□□ -0.01
LINC00643-203ENST00000555518 POTEIP0CG38 1075 aa14.94□□□□□ -0.02
LINC00643-203ENST00000555518 MNX1P50219 401 aaPredicted RBP14.91□□□□□ -0.02
LINC00643-203ENST00000555518 PLEKHG5O94827 1062 aa14.84□□□□□ -0.03
LINC00643-203ENST00000555518 GALR2O43603 387 aaPredicted RBP14.83□□□□□ -0.04
LINC00643-203ENST00000555518 PHF12Q96QT6 1004 aa14.79□□□□□ -0.04
LINC00643-203ENST00000555518 MIER1Q8N108 512 aa14.68□□□□□ -0.06
LINC00643-203ENST00000555518 TSPYL2Q9H2G4 693 aaPredicted RBP14.65□□□□□ -0.06
LINC00643-203ENST00000555518 NISCHQ9Y2I1 1504 aa14.62□□□□□ -0.07
LINC00643-203ENST00000555518 MS4A3Q96HJ5 214 aa14.62□□□□□ -0.07
LINC00643-203ENST00000555518 ZBTB47Q9UFB7 747 aaPredicted RBP14.61□□□□□ -0.07
LINC00643-203ENST00000555518 CCDC61Q9Y6R9 512 aa14.61□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms