RNA–Protein interactions for RNA: ENST00000515847.1

LIMCH1-222, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 4

Gene LIMCH1, Length 490 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-222ENST00000515847 TOM1L2Q6ZVM7 507 aa10.47□□□□□ -0.73
LIMCH1-222ENST00000515847 SEPT12Q8IYM1 358 aa10.47□□□□□ -0.73
LIMCH1-222ENST00000515847 ANKRD24Q8TF21 1146 aa10.47□□□□□ -0.73
LIMCH1-222ENST00000515847 ONECUT3O60422 494 aaPredicted RBP10.46□□□□□ -0.73
LIMCH1-222ENST00000515847 CC2D1BQ5T0F9 858 aaKnown RBP10.46□□□□□ -0.73
LIMCH1-222ENST00000515847 TCP11L2Q8N4U5 519 aa10.46□□□□□ -0.73
LIMCH1-222ENST00000515847 LTV1Q96GA3 475 aaPredicted RBP10.46□□□□□ -0.73
LIMCH1-222ENST00000515847 CFAP53Q96M91 514 aa10.46□□□□□ -0.73
LIMCH1-222ENST00000515847 RGPD2P0DJD1 1756 aa10.46□□□□□ -0.74
LIMCH1-222ENST00000515847 PARP4Q9UKK3 1724 aaKnown RBP10.45□□□□□ -0.74
LIMCH1-222ENST00000515847 LRRC37A3O60309 1634 aa10.45□□□□□ -0.74
LIMCH1-222ENST00000515847 PPM1GO15355 546 aaPredicted RBP10.45□□□□□ -0.74
LIMCH1-222ENST00000515847 DDX10Q13206 875 aaKnown RBP10.45□□□□□ -0.74
LIMCH1-222ENST00000515847 CNGB1Q14028 1251 aaPredicted RBP10.45□□□□□ -0.74
LIMCH1-222ENST00000515847 RALBP1Q15311 655 aa10.45□□□□□ -0.74
LIMCH1-222ENST00000515847 BARGINQ6ZT62 677 aa10.45□□□□□ -0.74
LIMCH1-222ENST00000515847 CARD10Q9BWT7 1032 aa10.45□□□□□ -0.74
LIMCH1-222ENST00000515847 DISP2A7MBM2 1401 aa10.44□□□□□ -0.74
LIMCH1-222ENST00000515847 INSRP06213 1382 aa10.44□□□□□ -0.74
LIMCH1-222ENST00000515847 SOCS7O14512 581 aa10.44□□□□□ -0.74
LIMCH1-222ENST00000515847 HSP90AB2PQ58FF8 381 aa10.44□□□□□ -0.74
LIMCH1-222ENST00000515847 NLRP2Q9NX02 1062 aa10.44□□□□□ -0.74
LIMCH1-222ENST00000515847 POLKQ9UBT6 870 aa10.44□□□□□ -0.74
LIMCH1-222ENST00000515847 THRAP3Q9Y2W1 955 aaKnown RBP10.44□□□□□ -0.74
LIMCH1-222ENST00000515847 PLEKHG2Q9H7P9 1386 aa10.43□□□□□ -0.74
LIMCH1-222ENST00000515847 GABBR2O75899 941 aa10.43□□□□□ -0.74
LIMCH1-222ENST00000515847 CDCA7Q9BWT1 371 aaPredicted RBP10.43□□□□□ -0.74
LIMCH1-222ENST00000515847 ANP32CO43423 234 aa10.42□□□□□ -0.74
LIMCH1-222ENST00000515847 KRT27Q7Z3Y8 459 aa10.42□□□□□ -0.74
LIMCH1-222ENST00000515847 PARD3Q8TEW0 1356 aa10.41□□□□□ -0.74
LIMCH1-222ENST00000515847 CD44P16070 742 aaKnown RBP10.41□□□□□ -0.74
LIMCH1-222ENST00000515847 USHBP1Q8N6Y0 703 aa10.41□□□□□ -0.74
LIMCH1-222ENST00000515847 CREBZFQ9NS37 354 aa10.41□□□□□ -0.74
LIMCH1-222ENST00000515847 MYBBP1AQ9BQG0 1328 aaKnown RBP10.4□□□□□ -0.74
LIMCH1-222ENST00000515847 FAM182BQ5T319 152 aa10.4□□□□□ -0.74
LIMCH1-222ENST00000515847 NBPF6Q5VWK0 638 aa10.4□□□□□ -0.74
LIMCH1-222ENST00000515847 NBPF4Q96M43 638 aa10.4□□□□□ -0.74
LIMCH1-222ENST00000515847 NUDCQ9Y266 331 aa10.4□□□□□ -0.74
LIMCH1-222ENST00000515847 TNS2Q63HR2 1409 aa10.4□□□□□ -0.75
LIMCH1-222ENST00000515847 MEGF6O75095 1541 aa10.39□□□□□ -0.75
LIMCH1-222ENST00000515847 IL2RBP14784 551 aa10.39□□□□□ -0.75
LIMCH1-222ENST00000515847 EIF4A2Q14240 407 aaKnown RBP10.39□□□□□ -0.75
LIMCH1-222ENST00000515847 NCAPD2Q15021 1401 aa10.39□□□□□ -0.75
LIMCH1-222ENST00000515847 MTHFSP49914 203 aa10.38□□□□□ -0.75
LIMCH1-222ENST00000515847 PDE3BQ13370 1112 aa10.38□□□□□ -0.75
LIMCH1-222ENST00000515847 DDB1Q16531 1140 aa10.38□□□□□ -0.75
LIMCH1-222ENST00000515847 UPF1Q92900 1129 aaKnown RBP eCLIP10.38□□□□□ -0.75
LIMCH1-222ENST00000515847 SHANK3Q9BYB0 1731 aa10.38□□□□□ -0.75
LIMCH1-222ENST00000515847 COL3A1P02461 1466 aaPredicted RBP10.37□□□□□ -0.75
LIMCH1-222ENST00000515847 OVOS2A0A0G2JMS6 1433 aa10.37□□□□□ -0.75
LIMCH1-222ENST00000515847 NEFMP07197 916 aa10.37□□□□□ -0.75
LIMCH1-222ENST00000515847 RGPD1P0DJD0 1748 aa10.37□□□□□ -0.75
LIMCH1-222ENST00000515847 RAPGEF4Q8WZA2 1011 aa10.37□□□□□ -0.75
LIMCH1-222ENST00000515847 DIAPH1O60610 1272 aaKnown RBP10.36□□□□□ -0.75
LIMCH1-222ENST00000515847 EYA1Q99502 592 aa10.36□□□□□ -0.75
LIMCH1-222ENST00000515847 PNNQ9H307 717 aaKnown RBP10.36□□□□□ -0.75
LIMCH1-222ENST00000515847 TNS1Q9HBL0 1735 aaKnown RBP10.36□□□□□ -0.75
LIMCH1-222ENST00000515847 IGSF1Q8N6C5 1336 aa10.35□□□□□ -0.75
LIMCH1-222ENST00000515847 EXOC5O00471 708 aa10.35□□□□□ -0.75
LIMCH1-222ENST00000515847 PPP2R1AP30153 589 aa10.35□□□□□ -0.75
LIMCH1-222ENST00000515847 MARCH10Q8NA82 808 aaPredicted RBP10.35□□□□□ -0.75
LIMCH1-222ENST00000515847 PRKRIP1Q9H875 184 aaPredicted RBP10.35□□□□□ -0.75
LIMCH1-222ENST00000515847 PKD1L3Q7Z443 1732 aa10.35□□□□□ -0.75
LIMCH1-222ENST00000515847 TATP17735 454 aaPredicted RBP10.34□□□□□ -0.75
LIMCH1-222ENST00000515847 IL13P35225 146 aa10.34□□□□□ -0.75
LIMCH1-222ENST00000515847 FAM196AQ6ZSG2 479 aa10.34□□□□□ -0.75
LIMCH1-222ENST00000515847 SBF2Q86WG5 1849 aa10.34□□□□□ -0.75
LIMCH1-222ENST00000515847 AEBP1Q8IUX7 1158 aa10.33□□□□□ -0.76
LIMCH1-222ENST00000515847 BCL9O00512 1426 aa10.33□□□□□ -0.76
LIMCH1-222ENST00000515847 KDRP35968 1356 aa10.32□□□□□ -0.76
LIMCH1-222ENST00000515847 WDR43Q15061 677 aaKnown RBP eCLIP10.32□□□□□ -0.76
LIMCH1-222ENST00000515847 AMOTQ4VCS5 1084 aa10.32□□□□□ -0.76
LIMCH1-222ENST00000515847 ZCRB1Q8TBF4 217 aaKnown RBP10.32□□□□□ -0.76
LIMCH1-222ENST00000515847 SPG7Q9UQ90 795 aa10.32□□□□□ -0.76
LIMCH1-222ENST00000515847 PCDH11XQ9BZA7 1347 aa10.32□□□□□ -0.76
LIMCH1-222ENST00000515847 PCDH11YQ9BZA8 1340 aa10.32□□□□□ -0.76
LIMCH1-222ENST00000515847 DOT1LQ8TEK3 1739 aa10.31□□□□□ -0.76
LIMCH1-222ENST00000515847 U2SURPO15042 1029 aaKnown RBP10.31□□□□□ -0.76
LIMCH1-222ENST00000515847 TRIM37O94972 964 aa10.31□□□□□ -0.76
LIMCH1-222ENST00000515847 SULT6B1Q6IMI4 303 aa10.31□□□□□ -0.76
LIMCH1-222ENST00000515847 DDX54Q8TDD1 881 aaKnown RBP10.31□□□□□ -0.76
LIMCH1-222ENST00000515847 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.31□□□□□ -0.76
LIMCH1-222ENST00000515847 NHSQ6T4R5 1651 aa10.31□□□□□ -0.76
LIMCH1-222ENST00000515847 HSP90AB1P08238 724 aaKnown RBP10.3□□□□□ -0.76
LIMCH1-222ENST00000515847 SF3B2Q13435 895 aaKnown RBP10.3□□□□□ -0.76
LIMCH1-222ENST00000515847 CCDC125Q86Z20 511 aa10.3□□□□□ -0.76
LIMCH1-222ENST00000515847 PROM2Q8N271 834 aa10.3□□□□□ -0.76
LIMCH1-222ENST00000515847 CYP27B1O15528 508 aa10.29□□□□□ -0.76
LIMCH1-222ENST00000515847 HMOX1P09601 288 aa10.29□□□□□ -0.76
LIMCH1-222ENST00000515847 U2AF1L5P0DN76 240 aaPredicted RBP10.29□□□□□ -0.76
LIMCH1-222ENST00000515847 U2AF1Q01081 240 aaKnown RBP eCLIP10.29□□□□□ -0.76
LIMCH1-222ENST00000515847 PLEKHO1Q53GL0 409 aaPredicted RBP10.29□□□□□ -0.76
LIMCH1-222ENST00000515847 PTF1AQ7RTS3 328 aa10.29□□□□□ -0.76
LIMCH1-222ENST00000515847 DEFB132Q7Z7B7 95 aa10.29□□□□□ -0.76
LIMCH1-222ENST00000515847 ACSBG1Q96GR2 724 aa10.29□□□□□ -0.76
LIMCH1-222ENST00000515847 TOGARAM1Q9Y4F4 1720 aa10.29□□□□□ -0.76
LIMCH1-222ENST00000515847 MAPK8IP3Q9UPT6 1336 aa10.29□□□□□ -0.76
LIMCH1-222ENST00000515847 HMGB2P26583 209 aaKnown RBP10.28□□□□□ -0.76
LIMCH1-222ENST00000515847 C1orf141Q5JVX7 400 aa10.28□□□□□ -0.76
LIMCH1-222ENST00000515847 DIEXFQ68CQ4 756 aaKnown RBP10.28□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms