RNA–Protein interactions for RNA: ENST00000488017.1

SMC4-220, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 4

Gene SMC4, Length 592 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-220ENST00000488017 KRBA1A5PL33 1030 aa9.33□□□□□ -0.92
SMC4-220ENST00000488017 NR6A1Q15406 480 aa9.33□□□□□ -0.92
SMC4-220ENST00000488017 SKIV2LQ15477 1246 aaKnown RBP9.33□□□□□ -0.92
SMC4-220ENST00000488017 ACDQ96AP0 544 aa9.33□□□□□ -0.92
SMC4-220ENST00000488017 OCSTAMPQ9BR26 566 aa9.33□□□□□ -0.92
SMC4-220ENST00000488017 PPP2R2DQ66LE6 453 aa9.32□□□□□ -0.92
SMC4-220ENST00000488017 ALYREFQ86V81 257 aaKnown RBP9.32□□□□□ -0.92
SMC4-220ENST00000488017 PNMA1Q8ND90 353 aa9.32□□□□□ -0.92
SMC4-220ENST00000488017 ADAM32Q8TC27 787 aa9.32□□□□□ -0.92
SMC4-220ENST00000488017 ADH1AP07327 375 aa9.31□□□□□ -0.92
SMC4-220ENST00000488017 ZNF837Q96EG3 531 aaPredicted RBP9.31□□□□□ -0.92
SMC4-220ENST00000488017 SH3D19Q5HYK7 790 aa9.3□□□□□ -0.92
SMC4-220ENST00000488017 FOXD4L5Q5VV16 416 aaPredicted RBP9.3□□□□□ -0.92
SMC4-220ENST00000488017 FOXR1Q6PIV2 292 aa9.3□□□□□ -0.92
SMC4-220ENST00000488017 TRIM22Q8IYM9 498 aa9.3□□□□□ -0.92
SMC4-220ENST00000488017 TRIM52Q96A61 297 aa9.3□□□□□ -0.92
SMC4-220ENST00000488017 ZNF395Q9H8N7 513 aaPredicted RBP9.3□□□□□ -0.92
SMC4-220ENST00000488017 LCE3BQ5TA77 95 aa9.29□□□□□ -0.92
SMC4-220ENST00000488017 ZNF784Q8NCA9 323 aaPredicted RBP9.29□□□□□ -0.92
SMC4-220ENST00000488017 GNL3Q9BVP2 549 aaKnown RBP eCLIP9.29□□□□□ -0.92
SMC4-220ENST00000488017 TMPRSS4Q9NRS4 437 aa9.29□□□□□ -0.92
SMC4-220ENST00000488017 PTGIRP43119 386 aa9.28□□□□□ -0.92
SMC4-220ENST00000488017 LYSMD3Q7Z3D4 306 aa9.28□□□□□ -0.92
SMC4-220ENST00000488017 LILRA1O75019 489 aa9.27□□□□□ -0.93
SMC4-220ENST00000488017 ESPNB1AK53 854 aa9.26□□□□□ -0.93
SMC4-220ENST00000488017 GPR25O00155 361 aa9.26□□□□□ -0.93
SMC4-220ENST00000488017 OIP5O43482 229 aa9.26□□□□□ -0.93
SMC4-220ENST00000488017 SNRPNP63162 240 aaKnown RBP9.26□□□□□ -0.93
SMC4-220ENST00000488017 FBXO31Q5XUX0 539 aaPredicted RBP9.26□□□□□ -0.93
SMC4-220ENST00000488017 DZIP3Q86Y13 1208 aaKnown RBP9.26□□□□□ -0.93
SMC4-220ENST00000488017 KRTAP4-12Q9BQ66 201 aa9.26□□□□□ -0.93
SMC4-220ENST00000488017 ERVH48-1M5A8F1 160 aa9.25□□□□□ -0.93
SMC4-220ENST00000488017 ADD1P35611 737 aaKnown RBP9.25□□□□□ -0.93
SMC4-220ENST00000488017 SEPT12Q8IYM1 358 aa9.25□□□□□ -0.93
SMC4-220ENST00000488017 KDF1Q8NAX2 398 aaPredicted RBP9.25□□□□□ -0.93
SMC4-220ENST00000488017 AP1G2O75843 785 aa9.24□□□□□ -0.93
SMC4-220ENST00000488017 DBN1Q16643 649 aa9.24□□□□□ -0.93
SMC4-220ENST00000488017 PROCA1Q8NCQ7 364 aaPredicted RBP9.24□□□□□ -0.93
SMC4-220ENST00000488017 COL8A1P27658 744 aa9.23□□□□□ -0.93
SMC4-220ENST00000488017 RNF144AP50876 292 aaPredicted RBP9.23□□□□□ -0.93
SMC4-220ENST00000488017 RAB15P59190 212 aa9.23□□□□□ -0.93
SMC4-220ENST00000488017 DDRGK1Q96HY6 314 aa9.23□□□□□ -0.93
SMC4-220ENST00000488017 MKL2Q9ULH7 1088 aa9.23□□□□□ -0.93
SMC4-220ENST00000488017 NSFL1CQ9UNZ2 370 aaKnown RBP9.22□□□□□ -0.93
SMC4-220ENST00000488017 EPS8L1Q8TE68 723 aa9.21□□□□□ -0.94
SMC4-220ENST00000488017 ATP1B4Q9UN42 357 aaPredicted RBP9.21□□□□□ -0.94
SMC4-220ENST00000488017 USP17L8P0C7I0 530 aa9.2□□□□□ -0.94
SMC4-220ENST00000488017 ITGB7P26010 798 aa9.2□□□□□ -0.94
SMC4-220ENST00000488017 GTPBP3Q969Y2 492 aaKnown RBP9.2□□□□□ -0.94
SMC4-220ENST00000488017 TRERF1Q96PN7 1200 aa9.2□□□□□ -0.94
SMC4-220ENST00000488017 H7C1W4 665 aa9.19□□□□□ -0.94
SMC4-220ENST00000488017 RHOQP17081 205 aa9.19□□□□□ -0.94
SMC4-220ENST00000488017 MX2P20592 715 aa9.19□□□□□ -0.94
SMC4-220ENST00000488017 GPC1P35052 558 aa9.19□□□□□ -0.94
SMC4-220ENST00000488017 PRICKLE2Q7Z3G6 844 aa9.19□□□□□ -0.94
SMC4-220ENST00000488017 CCDC125Q86Z20 511 aa9.19□□□□□ -0.94
SMC4-220ENST00000488017 HMX1Q9NP08 348 aaPredicted RBP9.19□□□□□ -0.94
SMC4-220ENST00000488017 RIPOR1Q6ZS17 1223 aa9.18□□□□□ -0.94
SMC4-220ENST00000488017 KDM4CQ9H3R0 1056 aa9.18□□□□□ -0.94
SMC4-220ENST00000488017 CYLDQ9NQC7 956 aa9.18□□□□□ -0.94
SMC4-220ENST00000488017 ATP5J2-PTCD1G3V325 749 aa9.17□□□□□ -0.94
SMC4-220ENST00000488017 OXCT2Q9BYC2 517 aaPredicted RBP9.17□□□□□ -0.94
SMC4-220ENST00000488017 SHISA8B8ZZ34 492 aa9.16□□□□□ -0.94
SMC4-220ENST00000488017 MAP2K3P46734 347 aa9.16□□□□□ -0.94
SMC4-220ENST00000488017 FAM117AQ9C073 453 aa9.16□□□□□ -0.94
SMC4-220ENST00000488017 DYRK1BQ9Y463 629 aa9.16□□□□□ -0.94
SMC4-220ENST00000488017 C1QTNF9BB2RNN3 333 aa9.14□□□□□ -0.95
SMC4-220ENST00000488017 ZMYM1Q5SVZ6 1142 aa9.14□□□□□ -0.95
SMC4-220ENST00000488017 KRTAP9-9Q9BYP9 154 aa9.14□□□□□ -0.95
SMC4-220ENST00000488017 KRTAP9-4Q9BYQ2 154 aa9.14□□□□□ -0.95
SMC4-220ENST00000488017 RFC5P40937 340 aa9.13□□□□□ -0.95
SMC4-220ENST00000488017 GPBP1L1Q9HC44 474 aaPredicted RBP9.13□□□□□ -0.95
SMC4-220ENST00000488017 ZBBXA8MT70 800 aa9.12□□□□□ -0.95
SMC4-220ENST00000488017 MEN1O00255 615 aa9.12□□□□□ -0.95
SMC4-220ENST00000488017 GRIN2CQ14957 1233 aa9.12□□□□□ -0.95
SMC4-220ENST00000488017 LINC00114Q6XXX2 140 aa9.12□□□□□ -0.95
SMC4-220ENST00000488017 CD163Q86VB7 1156 aa9.12□□□□□ -0.95
SMC4-220ENST00000488017 TRIM34Q9BYJ4 488 aa9.12□□□□□ -0.95
SMC4-220ENST00000488017 SEMA6BQ9H3T3 888 aa9.12□□□□□ -0.95
SMC4-220ENST00000488017 A0A1W2PRU2 124 aa9.11□□□□□ -0.95
SMC4-220ENST00000488017 BTBD11A6QL63 1104 aa9.11□□□□□ -0.95
SMC4-220ENST00000488017 GIGYF1O75420 1035 aaPredicted RBP9.11□□□□□ -0.95
SMC4-220ENST00000488017 ERVK-9P63128 1117 aa9.11□□□□□ -0.95
SMC4-220ENST00000488017 C1orf229Q6ZS94 237 aaPredicted RBP9.11□□□□□ -0.95
SMC4-220ENST00000488017 RRAGCQ9HB90 399 aa9.11□□□□□ -0.95
SMC4-220ENST00000488017 WDR44Q5JSH3 913 aa9.1□□□□□ -0.95
SMC4-220ENST00000488017 RNF20Q5VTR2 975 aa9.1□□□□□ -0.95
SMC4-220ENST00000488017 CC2D2BQ6DHV5 1058 aa9.1□□□□□ -0.95
SMC4-220ENST00000488017 SUV39H2Q9H5I1 410 aa9.1□□□□□ -0.95
SMC4-220ENST00000488017 PCDHB9Q9Y5E1 797 aa9.1□□□□□ -0.95
SMC4-220ENST00000488017 HOXB4P17483 251 aaPredicted RBP9.09□□□□□ -0.95
SMC4-220ENST00000488017 MCCD1P59942 119 aaPredicted RBP9.09□□□□□ -0.95
SMC4-220ENST00000488017 TMEM259Q4ZIN3 620 aa9.09□□□□□ -0.95
SMC4-220ENST00000488017 SLC27A3Q5K4L6 730 aa9.09□□□□□ -0.95
SMC4-220ENST00000488017 EDARADDQ8WWZ3 215 aa9.09□□□□□ -0.95
SMC4-220ENST00000488017 NLRP3Q96P20 1036 aa9.09□□□□□ -0.95
SMC4-220ENST00000488017 GAS2L1Q99501 681 aaPredicted RBP9.09□□□□□ -0.95
SMC4-220ENST00000488017 CFHR5Q9BXR6 569 aa9.09□□□□□ -0.95
SMC4-220ENST00000488017 GRIP2Q9C0E4 1043 aa9.09□□□□□ -0.95
SMC4-220ENST00000488017 GDF2Q9UK05 429 aaPredicted RBP9.09□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms